BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0588b.2
(157 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC224375 similar to PIR|E86251|E86251 protein F25C20.8 [imported... 57 5e-09
TC207763 38 0.002
TC223480 36 0.009
TC215663 similar to UP|Q6IVL3 (Q6IVL3) Transcription factor DRE-... 30 0.37
BU084380 homologue to GP|15420162|gb| F-box containing protein O... 29 0.82
TC232050 similar to UP|Q9LS61 (Q9LS61) Gb|AAF26480.1 (At3g18295)... 28 1.4
TC208815 homologue to UP|Q9AXD9 (Q9AXD9) Mago nashi-like protein... 28 1.4
TC216999 similar to UP|Q9AUH6 (Q9AUH6) F-box containing protein ... 28 2.4
TC228718 similar to UP|PIP_ARATH (P93732) Proline iminopeptidase... 28 2.4
TC214206 similar to UP|P93826 (P93826) F19P19.26, partial (4%) 27 3.1
TC233082 similar to GB|AAM16218.1|20334714|AY093957 At2g41900/T6... 27 3.1
TC212454 27 3.1
BI967887 27 5.3
BI945220 27 5.3
TC232462 similar to GB|CAA04453.1|2624379|PPTRP1877 inorganic py... 27 5.3
TC234419 similar to UP|Q6L8U1 (Q6L8U1) Auxin response factor 3, ... 27 5.3
TC229525 similar to UP|Q8VXU8 (Q8VXU8) AT5g23690/MQM1_4, partial... 27 5.3
TC219425 26 6.9
TC232571 26 6.9
BM891937 26 6.9
>TC224375 similar to PIR|E86251|E86251 protein F25C20.8 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(12%)
Length = 543
Score = 56.6 bits (135), Expect = 5e-09
Identities = 42/146 (28%), Positives = 72/146 (48%), Gaps = 3/146 (2%)
Frame = +2
Query: 2 VFQKMVSLLLFMTILFALRFDTGVTFSIFPPKVTVEIINDLPQPPSTIPLTFHCKSKDDD 61
+ + +V++++F+ + A D F PK TV + N + I + HC+SKDDD
Sbjct: 83 MLKALVTIIVFL--MMACAQDVLSDDGFFSPKNTVRVYNRMND---NILVYLHCQSKDDD 247
Query: 62 LGIHTLNHGEVFSFHFKPSIIRFSSTLFFCSFTWPDKTPSRHYFDVYDQDRDSCKF---C 118
LG H L GE + F +I +TLF+C+ + S F+VY+ + K C
Sbjct: 248 LGQHVLAVGEHQEWSFNDRVI--GTTLFWCTMNANNVHAS---FEVYNMKTELMKCSSQC 412
Query: 119 SWKMSKTGGCMYEEKTGRHDICVPWN 144
+ ++ +GG ++E G + + WN
Sbjct: 413 NRILNNSGGYFFDEFDGYWEKRLSWN 490
>TC207763
Length = 533
Score = 38.1 bits (87), Expect = 0.002
Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 4/133 (3%)
Frame = +1
Query: 2 VFQKMVSLLLFMTILFALRFDTGVTFSIFPPKVTVEIINDLPQPPSTIPLTFHCKSKDDD 61
+F + VS LL + +L +T K + + N+L + LT CK +
Sbjct: 52 LFARSVSTLLVLILLLPTLNNT------MAEKALIGVTNNL----GSRNLTVSCKIDNHP 201
Query: 62 LGIHTLNHGEVFSFHFKPSII-RFSSTLFF--CSFTWPDKTPSRHYFDVYDQDRDS-CKF 117
H L + + + F P F + F CSF W + H FD+Y RD C
Sbjct: 202 ---HLLGPTDYYEWKFSPEYNDEFGTEPLFSNCSFQWEG---AHHSFDLYVLVRDGDCNN 363
Query: 118 CSWKMSKTGGCMY 130
CSW + C Y
Sbjct: 364 CSWHIKLDAACRY 402
>TC223480
Length = 413
Score = 35.8 bits (81), Expect = 0.009
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = +3
Query: 36 VEIINDLPQPPSTIPLTFHCKSKDDDLGIHTLNHG--EVFSFHFKPSIIRFSSTLFFCSF 93
V + N+L Q S T HCK+ + DLG +N E F H + T FC
Sbjct: 159 VRVSNNLNQGLS---FTIHCKTNNKDLGTQVVNQNYYERFELHRDNAP---GLTFLFCKI 320
Query: 94 TWPDKTPSR-HYFDVYDQDRDSCKFCSWKMS 123
TW D + Y D D R C+W+++
Sbjct: 321 TWRDASILYVLYQDARDFRRRCTTDCNWEVN 413
>TC215663 similar to UP|Q6IVL3 (Q6IVL3) Transcription factor DRE-binding
factor 2, partial (33%)
Length = 1777
Score = 30.4 bits (67), Expect = 0.37
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Frame = +3
Query: 8 SLLLFMTILFALRFDTGVTFSI--FPPKVTVEIINDLPQPPSTIPLTFHCKSKDDDLGIH 65
S LLF + L F + + S+ FPP + +N L C S D LG+
Sbjct: 30 SSLLFSSFSVVLTFFSLIF*SLIFFPPLLLPASLNPF--------LLIICLSTRDFLGLP 185
Query: 66 TLNHGEVFSFHFKPSIIRFSSTLFFCSF 93
F KP + R LFFC F
Sbjct: 186 HQKDSNFEKFSRKPGVFRIEIQLFFCLF 269
>BU084380 homologue to GP|15420162|gb| F-box containing protein ORE9
{Arabidopsis thaliana}, partial (9%)
Length = 410
Score = 29.3 bits (64), Expect = 0.82
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 47 STIPLTFHCKSKDDDLGIHTLNHGEVFSFHFKPSIIRFSSTLFFCSF 93
ST FHC+ D + +H + E +S H + S+L+ C F
Sbjct: 268 STSKQFFHCQGL*DVVTLHVNHIFEAYSVHLQSGCTNLPSSLYSCHF 128
>TC232050 similar to UP|Q9LS61 (Q9LS61) Gb|AAF26480.1 (At3g18295), partial
(32%)
Length = 1005
Score = 28.5 bits (62), Expect = 1.4
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 49 IPLTFHCKSKDDDL-GIHTLNHGEVFSFHFKPSIIRFSSTLFFCS 92
I +T H KS + GIH+ + VF+ HF PS+ S + FCS
Sbjct: 966 IYVTTHRKSASKNKWGIHSESQS-VFAIHFSPSLRNISHFVGFCS 835
>TC208815 homologue to UP|Q9AXD9 (Q9AXD9) Mago nashi-like protein, partial
(90%)
Length = 749
Score = 28.5 bits (62), Expect = 1.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -3
Query: 115 CKFCSWKMSKTGGC 128
C+FCSW S++G C
Sbjct: 186 CRFCSWSCSRSGAC 145
>TC216999 similar to UP|Q9AUH6 (Q9AUH6) F-box containing protein TIR1,
partial (38%)
Length = 1338
Score = 27.7 bits (60), Expect = 2.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 120 WKMSKTGGCMYEEKTGRHDICVPWNNELNL 149
W M + G ++ K R +C PW +L+L
Sbjct: 828 WSMKQDGTGDFKYKPARRFLCYPWQTKLSL 917
>TC228718 similar to UP|PIP_ARATH (P93732) Proline iminopeptidase (PIP)
(Prolyl aminopeptidase) (PAP) , partial (47%)
Length = 757
Score = 27.7 bits (60), Expect = 2.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 135 GRHDICVPWNNELNLHKRW 153
GR+D+C P + +LHK W
Sbjct: 323 GRYDVCCPMMSAWDLHKAW 379
>TC214206 similar to UP|P93826 (P93826) F19P19.26, partial (4%)
Length = 1289
Score = 27.3 bits (59), Expect = 3.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +1
Query: 108 YDQDRDSCKFCSWKMSKTGGCMY 130
YD C F SW + GC+Y
Sbjct: 217 YDVKTFKCSFSSWSQANCSGCLY 285
>TC233082 similar to GB|AAM16218.1|20334714|AY093957 At2g41900/T6D20.20
{Arabidopsis thaliana;} , partial (3%)
Length = 731
Score = 27.3 bits (59), Expect = 3.1
Identities = 23/86 (26%), Positives = 37/86 (42%)
Frame = -3
Query: 62 LGIHTLNHGEVFSFHFKPSIIRFSSTLFFCSFTWPDKTPSRHYFDVYDQDRDSCKFCSWK 121
L + T H +F + +II S+ L+F W + +Y + + D C F + K
Sbjct: 630 LVLPTTLHFHLFIPKYMINII--SNILYFHPQNWTNTESQGNY----NSNNDPCNFSTRK 469
Query: 122 MSKTGGCMYEEKTGRHDICVPWNNEL 147
K EEK + +C WN +L
Sbjct: 468 *KK------EEKQNIYSLCKDWNVKL 409
>TC212454
Length = 309
Score = 27.3 bits (59), Expect = 3.1
Identities = 19/65 (29%), Positives = 28/65 (42%)
Frame = -1
Query: 65 HTLNHGEVFSFHFKPSIIRFSSTLFFCSFTWPDKTPSRHYFDVYDQDRDSCKFCSWKMSK 124
H +++ E+F H S I+ + +T P S H R CK CSW ++
Sbjct: 186 HFISNTELFHSH---S*IQVGLSKSQLCYTRPLVLASNHR-----NPRVVCKLCSWPATQ 31
Query: 125 TGGCM 129
GCM
Sbjct: 30 PSGCM 16
>BI967887
Length = 353
Score = 26.6 bits (57), Expect = 5.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 102 RHYFDVYDQDRDSC 115
+HYF V+DQ RD+C
Sbjct: 85 QHYFWVFDQSRDAC 126
>BI945220
Length = 415
Score = 26.6 bits (57), Expect = 5.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 47 STIPLTFHCKSKDDDLGIHTLNHGE 71
+ +P FHC++ DD G+ + H E
Sbjct: 26 NNLPQAFHCENCDDVGGVSVVGHAE 100
>TC232462 similar to GB|CAA04453.1|2624379|PPTRP1877 inorganic
pyrophosphatase (pyrophosphate phospho-hydrolase)
{Pichia pastoris;} , partial (46%)
Length = 606
Score = 26.6 bits (57), Expect = 5.3
Identities = 15/32 (46%), Positives = 17/32 (52%)
Frame = +1
Query: 21 FDTGVTFSIFPPKVTVEIINDLPQPPSTIPLT 52
F T T S PP +T P PPST+PLT
Sbjct: 361 FPTATTASR-PPPLTSPRARTRPLPPSTLPLT 453
>TC234419 similar to UP|Q6L8U1 (Q6L8U1) Auxin response factor 3, partial
(14%)
Length = 485
Score = 26.6 bits (57), Expect = 5.3
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 26 TFSIFPPKVTVEIINDLPQPPSTIPLTFHCKSKDDDLGIHT 66
TF ++P + + P PP +PL FH KDDD GI++
Sbjct: 69 TFPMYPSPFPLRLKR--PWPPG-LPL-FHAGLKDDDFGINS 179
>TC229525 similar to UP|Q8VXU8 (Q8VXU8) AT5g23690/MQM1_4, partial (25%)
Length = 1107
Score = 26.6 bits (57), Expect = 5.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 108 YDQDRDSCKFCSWKMSKTG 126
Y C FCSW +SKTG
Sbjct: 26 YTSPISGCLFCSWWISKTG 82
>TC219425
Length = 1170
Score = 26.2 bits (56), Expect = 6.9
Identities = 12/42 (28%), Positives = 19/42 (44%)
Frame = +2
Query: 94 TWPDKTPSRHYFDVYDQDRDSCKFCSWKMSKTGGCMYEEKTG 135
+W + R + V + SC SW S G C +E+ +G
Sbjct: 722 SWREGPCEREFMGV*EGQFPSCSEISWSSSFDGVCNWEKDSG 847
>TC232571
Length = 414
Score = 26.2 bits (56), Expect = 6.9
Identities = 14/48 (29%), Positives = 24/48 (49%), Gaps = 4/48 (8%)
Frame = -1
Query: 72 VFSFHFKPSIIRFSSTLFFCSFTWPDK----TPSRHYFDVYDQDRDSC 115
+++ H PS I S+ F+ W K P +H F+ +QD+ +C
Sbjct: 276 IYTCH*LPSSIFVSTN*FYDPSKWA*KLLHYAPHKHLFEQGNQDKPTC 133
>BM891937
Length = 408
Score = 26.2 bits (56), Expect = 6.9
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 11/41 (26%)
Frame = +2
Query: 73 FSFHFKP-----------SIIRFSSTLFFCSFTWPDKTPSR 102
FSFHFKP II +S LF C++ D R
Sbjct: 200 FSFHFKPLIKTYLRYKERLIITYS*NLFHCAYVGTDSVVGR 322
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.327 0.141 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,270,517
Number of Sequences: 63676
Number of extensions: 193213
Number of successful extensions: 1373
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of query: 157
length of database: 12,639,632
effective HSP length: 89
effective length of query: 68
effective length of database: 6,972,468
effective search space: 474127824
effective search space used: 474127824
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0588b.2