TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0588b.10
         (328 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC226667 similar to UP|Q9SE96 (Q9SE96) FH protein interacting pr...    31  0.87
TC205709 weakly similar to UP|O45549 (O45549) C. elegans NUD-1 p...    30  1.1
TC222193 UP|Q39873 (Q39873) Lea protein precursor, complete            30  1.9
TC229285                                                               29  3.3
TC219676 similar to GB|AAF87136.1|9369388|AC002423 T23E23.3 {Ara...    29  3.3
NP005117 51 kDa seed maturation protein                                28  4.3
TC224883 similar to UP|Q9LDP0 (Q9LDP0) ESTs C72979(E2587), parti...    28  4.3
CA936339                                                               28  7.4
BI317804 similar to GP|8778396|gb|A F16A14.21 {Arabidopsis thali...    28  7.4
TC215678 weakly similar to UP|Q9LH70 (Q9LH70) Gb|AAD22996.1, par...    28  7.4
TC216000 similar to UP|O22253 (O22253) Photolyase/blue-light rec...    28  7.4
TC218648 similar to GB|AAM91502.1|22137314|AY133672 AT4g27310/M4...    28  7.4
TC215671 homologue to UP|Q9FMU9 (Q9FMU9) Similarity to ATFP3, pa...    28  7.4
TC226853 weakly similar to UP|Q9JM93 (Q9JM93) SRp25 nuclear prot...    27  9.7
CO984513                                                               27  9.7
TC207090 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, parti...    27  9.7

>TC226667 similar to UP|Q9SE96 (Q9SE96) FH protein interacting protein FIP1
           (At1g28200/F3H9_12), partial (83%)
          Length = 1252

 Score = 30.8 bits (68), Expect = 0.87
 Identities = 25/93 (26%), Positives = 38/93 (39%), Gaps = 15/93 (16%)
 Frame = +2

Query: 4   PNNPQYCMYP---PQYQAPPTGSSSSSKVSSTQCEAMPEE----------PEFSTQRGLD 50
           P+   Y  YP   P   APP  + S + +S      MP++          P  ST+  LD
Sbjct: 236 PHTADYAPYPKLDPTDVAPPLNTESRAPISEDAATTMPKDSNPYVTPAPVPASSTKTTLD 415

Query: 51  DID--LEESGKKRTKWSGKDNILLLQSWLNVST 81
            +   L + GKK  + + K   L    W ++ T
Sbjct: 416 SVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKT 514


>TC205709 weakly similar to UP|O45549 (O45549) C. elegans NUD-1 protein
           (Corresponding sequence F53A2.4), partial (31%)
          Length = 1291

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +2

Query: 257 AIGKAKLGFLAS----FEKLKTEKLEVKKEKNKLQKARLLKEYKDILMEDTSE 305
           A GK K  FL S     EK K E L+  +E+ K  K   LKE K+   EDTS+
Sbjct: 263 AAGKKKREFLKSEREKAEKKKREDLKASEEREKSDKR--LKEEKEPKAEDTSK 415


>TC222193 UP|Q39873 (Q39873) Lea protein precursor, complete
          Length = 1748

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 37/158 (23%)
 Frame = +3

Query: 133 VGCHTKAVNHWKS----GHSDKDIMATARQLYH--VDTGKD------------------- 167
           + C+  +V H  S    GH  ++  A   Q  +  ++TGKD                   
Sbjct: 159 MNCNCTSVGHMPSTKEEGHDFQEAKAKTTQTANKAMETGKDGKEAAESWTEWAKEKLTEG 338

Query: 168 --FKHENE--WRLVKD-----EPKWKGTFMTTSSTRQKKSGDGVYAT---SSDRSASIKG 215
             FKH+ E   + V D       K K     T+   +  +GD    T   + D + + K 
Sbjct: 339 LGFKHDQESTTKKVSDYAGDAAQKSKDYAGDTAQKTKDYAGDTAQKTKDYAGDTAQTSKD 518

Query: 216 DEYEATQPATRPLGKKNQKRKAKVGDTASSDLDYVPNS 253
              +A Q +   +G   QK K  VGD A   +DY  ++
Sbjct: 519 YAGDAAQKSKGYVGDAAQKTKEYVGDAAQKTMDYATDA 632


>TC229285 
          Length = 1202

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 270 EKLKTEKLEVKKEKNKLQKARLLKEYKDILM 300
           E L+TEK+  KKEK K++K   L     IL+
Sbjct: 147 ESLRTEKVPKKKEKRKVEKGHSLGRISCILL 239


>TC219676 similar to GB|AAF87136.1|9369388|AC002423 T23E23.3 {Arabidopsis
           thaliana;} , partial (18%)
          Length = 909

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = -2

Query: 5   NNPQYCMYPPQYQAPPTGSSSSSKVSSTQ--CEAMPEEPEFSTQRGLD 50
           N PQY   PP+  A  TGS +  ++ S    C+      +F    G D
Sbjct: 707 NEPQYLTKPPEIDATQTGSGAQKRIRSAPFVCQVKINNQKFHGFTGED 564


>NP005117 51 kDa seed maturation protein
          Length = 1422

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 1/142 (0%)
 Frame = +1

Query: 165 GKDFKHENEWRLVKDEPKWKGTFMTTSSTRQKKSGDGVYAT-SSDRSASIKGDEYEATQP 223
           G  FKH+ E    K+    K +   T + ++ K     YAT ++ +S    GD   A Q 
Sbjct: 229 GLGFKHDQE---SKESTTNKVSDYATDTAQKSKD----YATDTAQKSKDYAGD---AAQK 378

Query: 224 ATRPLGKKNQKRKAKVGDTASSDLDYVPNSEMIAIGKAKLGFLASFEKLKTEKLEVKKEK 283
           +    G   QK K    DTA +  DY  +    A  K+K G++    +   E +    +K
Sbjct: 379 SKDYAGDAAQKTKDYASDTAQTSKDYAGD----AAQKSK-GYVGDAAQKTKEYVGDAAQK 543

Query: 284 NKLQKARLLKEYKDILMEDTSE 305
            K       ++ KD   + T +
Sbjct: 544 TKDYATDAAQKTKDYATQKTKD 609


>TC224883 similar to UP|Q9LDP0 (Q9LDP0) ESTs C72979(E2587), partial (38%)
          Length = 850

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 4  PNNPQYCMYPPQYQAPPTGSSSSSKVSSTQCEAMP 38
          P+ PQ C Y   +  P   S SSSK++ + C   P
Sbjct: 29 PSTPQLCNYRISWPIPTYPSLSSSKLTVSLCSPSP 133


>CA936339 
          Length = 431

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/44 (36%), Positives = 22/44 (49%)
 Frame = +1

Query: 46 QRGLDDIDLEESGKKRTKWSGKDNILLLQSWLNVSTDRVGGNEQ 89
          +RG DD++ + S   RT WS  D I +    +    D V G EQ
Sbjct: 1  RRGGDDLEQDHSMWLRTVWSSPDVIQMTFCPITDLIDEVPGKEQ 132


>BI317804 similar to GP|8778396|gb|A F16A14.21 {Arabidopsis thaliana},
           partial (14%)
          Length = 414

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/27 (44%), Positives = 16/27 (58%)
 Frame = +1

Query: 15  QYQAPPTGSSSSSKVSSTQCEAMPEEP 41
           Q+ APPT SSS+   + T C A+   P
Sbjct: 169 QFPAPPTSSSSAYPHAPTTCAAISNNP 249


>TC215678 weakly similar to UP|Q9LH70 (Q9LH70) Gb|AAD22996.1, partial (17%)
          Length = 979

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 113 RTWLSLKSHFNKLNADLQKFVGCH 136
           RTWL+L  HF + N+D+Q+F   H
Sbjct: 932 RTWLNL-GHFLRGNSDIQQFFASH 864


>TC216000 similar to UP|O22253 (O22253) Photolyase/blue-light receptor
           (Photolyase/blue light photoreceptor PHR2), partial
           (84%)
          Length = 1641

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 2   SYPNNPQYCMYPPQYQAPPTGSSSSSKVSSTQCEAMP 38
           S P  P     PP   APP+  S+++  SST   + P
Sbjct: 210 SLPTAPATLPTPPPSAAPPSSGSATTSASSTMSASPP 320


>TC218648 similar to GB|AAM91502.1|22137314|AY133672 AT4g27310/M4I22_120
           {Arabidopsis thaliana;} , partial (63%)
          Length = 970

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/27 (44%), Positives = 16/27 (58%)
 Frame = +2

Query: 15  QYQAPPTGSSSSSKVSSTQCEAMPEEP 41
           Q+ APPT SSS+   + T C A+   P
Sbjct: 215 QFPAPPTSSSSAYPHAPTTCAAISNNP 295


>TC215671 homologue to UP|Q9FMU9 (Q9FMU9) Similarity to ATFP3, partial (10%)
          Length = 538

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/59 (23%), Positives = 23/59 (38%)
 Frame = +3

Query: 176 LVKDEPKWKGTFMTTSSTRQKKSGDGVYATSSDRSASIKGDEYEATQPATRPLGKKNQK 234
           ++K EP+ K           K  G+G            KG+E +A +P T  + +   K
Sbjct: 39  IMKQEPEKKEKVEEAKEEEMKSDGEGEENKEKKEKEEAKGEEAKAEEPTTPTITEDTNK 215


>TC226853 weakly similar to UP|Q9JM93 (Q9JM93) SRp25 nuclear protein
           (ADP-ribosylation factor-like 6 interacting protein 4),
           partial (11%)
          Length = 865

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 228 LGKKNQKRKAKVGDTASSDLDY 249
           L + N K++ K+GD A+ DLD+
Sbjct: 203 LRESNHKKRRKIGDHAAGDLDF 268


>CO984513 
          Length = 771

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/30 (36%), Positives = 19/30 (62%)
 Frame = -1

Query: 13  PPQYQAPPTGSSSSSKVSSTQCEAMPEEPE 42
           PPQ+    T S S+S+V++T C +  ++ E
Sbjct: 603 PPQFPQKRTSSRSTSRVTTTTCSSQQKQ*E 514


>TC207090 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partial (73%)
          Length = 2133

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
 Frame = +2

Query: 10  CMYPPQYQAPPTGSSSSSKVSSTQCEAMPEEPEFSTQRGLDDIDLEESGKKRTKWSGKDN 69
           C  PP    PP+ SSSSS  SS Q       PE      LD I   E+ +  T W  +  
Sbjct: 686 CSLPP----PPSSSSSSSSSSSWQSRWANLPPELL----LDIIQRLEASE--TSWPARRA 835

Query: 70  ILLLQS----WLNVSTDRVGGNEQ 89
           ++   S    W  ++ D V   EQ
Sbjct: 836 LVACASVCKLWREITKDVVKTPEQ 907


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.310    0.127    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,391,695
Number of Sequences: 63676
Number of extensions: 197053
Number of successful extensions: 1068
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of query: 328
length of database: 12,639,632
effective HSP length: 98
effective length of query: 230
effective length of database: 6,399,384
effective search space: 1471858320
effective search space used: 1471858320
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)