BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0587.7
(319 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231109 weakly similar to UP|Q9LUP7 (Q9LUP7) Gb|AAD25583.1, par... 75 5e-14
TC216702 similar to UP|Q9LDP5 (Q9LDP5) FLORICAULA/LEAFY-like pro... 60 1e-09
TC234332 57 1e-08
TC223618 52 5e-07
TC218059 weakly similar to UP|Q84KQ9 (Q84KQ9) F-box, partial (7%) 44 7e-05
TC216704 similar to UP|Q7PIN1 (Q7PIN1) ENSANGP00000023661 (Fragm... 40 0.001
TC232958 39 0.004
TC211805 similar to UP|Q9K6E7 (Q9K6E7) BH3782 protein, partial (... 36 0.026
TC228687 similar to UP|Q9FGY4 (Q9FGY4) Gb|AAF30317.1, partial (79%) 33 0.13
BM121480 32 0.29
BM108086 31 0.65
TC226557 similar to UP|Q9FJT7 (Q9FJT7) Pollen specific protein S... 31 0.65
CO980009 30 1.1
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 29 2.5
AI460954 similar to PIR|T05492|T054 thaumatin homolog T19K4.130 ... 29 3.2
TC235149 28 4.2
TC210006 similar to GB|BAA23185.1|2588824|D88930 phosphoglucose ... 28 5.5
BI893762 homologue to GP|11762186|gb| AT4g27960 {Arabidopsis tha... 28 7.2
TC214125 homologue to UP|Q42897 (Q42897) Ubiquitin conjugating e... 28 7.2
TC224894 homologue to GB|AAG40371.1|11762186|AF325019 AT4g27960 ... 28 7.2
>TC231109 weakly similar to UP|Q9LUP7 (Q9LUP7) Gb|AAD25583.1, partial (8%)
Length = 1061
Score = 74.7 bits (182), Expect = 5e-14
Identities = 44/149 (29%), Positives = 82/149 (54%), Gaps = 4/149 (2%)
Frame = +3
Query: 174 FGFGYDCMNDTYKVVAVAVSC-FREHKEERVVKVYDMGGSFWRNIQSFPVSLSHISQLGV 232
+GFG+ ++ YK++++ ++ + V++Y + W+N+ S P +L +GV
Sbjct: 489 YGFGHHSPSNDYKLLSITYFVDLQKRTFDSQVQLYTLKSDSWKNLPSMPYALCCARTMGV 668
Query: 233 YISGTLNWEVK---TDNYTFIIVSLDLGTEEYSQLSLPYSPLYGEDFEFPFLAVLKDCLC 289
++SG+L+W V + +IVS DL E + ++ LP + DF+ +A+L CLC
Sbjct: 669 FVSGSLHWLVTRKLQPHEPDLIVSFDLTRETFHEVPLPVT--VNGDFDMQ-VALLGGCLC 839
Query: 290 ILENNEGDNRFLVWQMKKFGVHNSWIQLY 318
++E+ F VW M+ +G NSW +L+
Sbjct: 840 VVEHR--GTGFDVWVMRVYGSRNSWEKLF 920
>TC216702 similar to UP|Q9LDP5 (Q9LDP5) FLORICAULA/LEAFY-like protein,
partial (5%)
Length = 1631
Score = 60.5 bits (145), Expect = 1e-09
Identities = 39/148 (26%), Positives = 73/148 (48%), Gaps = 4/148 (2%)
Frame = +3
Query: 175 GFGYDCMNDTYKVVAVAVSC-FREHKEERVVKVYDMGGSFWRNIQSFPVSLSHISQLGVY 233
GFG+D YK+V ++ + + VK+Y + + W+ + S P +L +GV+
Sbjct: 135 GFGFDHKTRDYKLVRISYFVDLHDRSFDAQVKLYTLRANAWKTLPSLPYALCCARTMGVF 314
Query: 234 ISGTLNWEVK---TDNYTFIIVSLDLGTEEYSQLSLPYSPLYGEDFEFPFLAVLKDCLCI 290
+ +L+W V + +I++ DL + + +L LP + FE LA+L LC+
Sbjct: 315 VGNSLHWVVTRKLEPDQPDLIIAFDLTHDIFRELPLPDTGGVDGGFEID-LALLGGSLCM 491
Query: 291 LENNEGDNRFLVWQMKKFGVHNSWIQLY 318
N R VW M+++ +SW +++
Sbjct: 492 TVNFH-KTRIDVWVMREYNRRDSWCKVF 572
>TC234332
Length = 644
Score = 57.0 bits (136), Expect = 1e-08
Identities = 37/104 (35%), Positives = 48/104 (45%), Gaps = 11/104 (10%)
Frame = +2
Query: 227 ISQLGVYISGTLNWEVKTDNYT-----------FIIVSLDLGTEEYSQLSLPYSPLYGED 275
+SQ G + GT+NW ++ + +I S DL E Y L +P L
Sbjct: 8 VSQDGASVRGTVNWLALPNSSSDYQWETVTIDDLVIFSYDLKNESYRYLLMP-DGLLEVP 184
Query: 276 FEFPFLAVLKDCLCILENNEGDNRFLVWQMKKFGVHNSWIQLYN 319
P L VLK CLC L + G N F W MK+FGV SW + N
Sbjct: 185 HSPPELVVLKGCLC-LSHRHGGNHFGFWLMKEFGVEKSWTRFLN 313
>TC223618
Length = 444
Score = 51.6 bits (122), Expect = 5e-07
Identities = 28/65 (43%), Positives = 37/65 (56%)
Frame = +1
Query: 171 YSSFGFGYDCMNDTYKVVAVAVSCFREHKEERVVKVYDMGGSFWRNIQSFPVSLSHISQL 230
+++FG GYD +N+ YKVVAV E+ E VKVY M + WR IQ FP S
Sbjct: 253 FTAFGLGYDHVNEDYKVVAVFCDP-SEYFIECKVKVYSMATNSWRKIQDFPHGFSPFQNS 429
Query: 231 GVYIS 235
G ++S
Sbjct: 430 GKFVS 444
>TC218059 weakly similar to UP|Q84KQ9 (Q84KQ9) F-box, partial (7%)
Length = 1185
Score = 44.3 bits (103), Expect = 7e-05
Identities = 34/160 (21%), Positives = 69/160 (42%), Gaps = 15/160 (9%)
Frame = +3
Query: 175 GFGYDCMNDTYKVVAVAVSCFREHKEERV----VKVYDMGGSFWRNIQS----FPVSLSH 226
GFG+D + YKVV + +E E + ++Y + + WR + P+ +
Sbjct: 519 GFGFDPKTNDYKVVVLKDLWLKETDEREIGYWSAELYSLNSNSWRKLDPSLLPLPIEIWG 698
Query: 227 ISQLGVYISGTLNW---EVKTDNYTFIIVSLDLGTEEYSQLSLPYSPLYGEDFEFPFLAV 283
S++ Y + +W ++D ++++ D+ E + ++ +P D +F L
Sbjct: 699 SSRVFTYANNCCHWWGFVEESDATQDVVLAFDMVKESFRKIRVP-KIRDSSDEKFGTLVP 875
Query: 284 LKDCLCI----LENNEGDNRFLVWQMKKFGVHNSWIQLYN 319
++ I + RF VW MK + SW++ Y+
Sbjct: 876 FEESASIGFLVYPVRGTEKRFDVWVMKDYWDEGSWVKQYS 995
>TC216704 similar to UP|Q7PIN1 (Q7PIN1) ENSANGP00000023661 (Fragment),
partial (5%)
Length = 1232
Score = 40.0 bits (92), Expect = 0.001
Identities = 26/89 (29%), Positives = 49/89 (54%), Gaps = 3/89 (3%)
Frame = +2
Query: 233 YISGTLNWEVKTD---NYTFIIVSLDLGTEEYSQLSLPYSPLYGEDFEFPFLAVLKDCLC 289
++ +L+W V + +IV+ DL E +++L LP + G FE +A+L D LC
Sbjct: 2 FVGNSLHWVVTRKLEPDQPDLIVAFDLTHEIFTELPLPDTGGVGGGFEID-VALLGDSLC 178
Query: 290 ILENNEGDNRFLVWQMKKFGVHNSWIQLY 318
+ N +++ VW M+++ +SW +L+
Sbjct: 179 MTVNFH-NSKMDVWVMREYNRGDSWCKLF 262
>TC232958
Length = 758
Score = 38.5 bits (88), Expect = 0.004
Identities = 21/89 (23%), Positives = 42/89 (46%), Gaps = 7/89 (7%)
Frame = +1
Query: 175 GFGYDCMNDTYKVVAVAVSCFREHKEERVVKVYDMGGSFWRNIQSFPVSLSHI------S 228
GFGYD D + VV +C+ + +++ + + W+ I+ +H +
Sbjct: 490 GFGYDPSTDDFLVVH---ACYNPKHQANCAEIFSLRANAWKGIEGIHFPYTHFRYTNRYN 660
Query: 229 QLGVYISGTLNWEVKTDNYTF-IIVSLDL 256
Q G +++G ++W N + +IV+ DL
Sbjct: 661 QFGSFLNGAIHWLAFRINASINVIVAFDL 747
>TC211805 similar to UP|Q9K6E7 (Q9K6E7) BH3782 protein, partial (13%)
Length = 693
Score = 35.8 bits (81), Expect = 0.026
Identities = 15/37 (40%), Positives = 22/37 (58%)
Frame = +1
Query: 281 LAVLKDCLCILENNEGDNRFLVWQMKKFGVHNSWIQL 317
L VL+ CLC + + F+VW MK +G SW++L
Sbjct: 4 LGVLQGCLC-MNYDYKKTHFVVWMMKDYGARESWVKL 111
>TC228687 similar to UP|Q9FGY4 (Q9FGY4) Gb|AAF30317.1, partial (79%)
Length = 1228
Score = 33.5 bits (75), Expect = 0.13
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Frame = +1
Query: 206 VYDMGGSFWRNIQSFPVSLSHISQLG----VYISGTLNWEVKTDNYTFIIVSLDLGTEEY 261
V+D + WR SF H + + V+++ L+W + Y I+ LDL E +
Sbjct: 478 VFDSELNKWRKFVSFQDD--HFTHMNKNQVVFVNNALHWLTASSTY---ILVLDLSCEVW 642
Query: 262 SQLSLPYSPLYGEDFEFPFLAVLKDCLCILENNEGDNRFLVWQMKKF 308
++ LPY + G +L CL +++ +E +W +K +
Sbjct: 643 RKMQLPYDLICGTGNRI-YLLDFDGCLSVIKISEA--WMNIWVLKDY 774
>BM121480
Length = 917
Score = 32.3 bits (72), Expect = 0.29
Identities = 25/101 (24%), Positives = 46/101 (44%), Gaps = 7/101 (6%)
Frame = +3
Query: 174 FGFGYDCMNDTYKVVAVAVSCFREHKEERVVKVYDMGGSFWR--NIQSFPV----SLSHI 227
+GFGYD D Y ++ + + F E +Y W+ I P+ + I
Sbjct: 363 YGFGYDESKDEYLLILIGLPKF---GPETGADIYSFKTESWKTDTIVYDPLXRYXAEDXI 533
Query: 228 SQLGVYISGTLNWEVKTDN-YTFIIVSLDLGTEEYSQLSLP 267
++ G ++G L+W V +++ +I++ DL S + LP
Sbjct: 534 ARAGSLLNGALHWFVFSESKXDHVIIAFDLVERTLSXIPLP 656
>BM108086
Length = 594
Score = 31.2 bits (69), Expect = 0.65
Identities = 20/72 (27%), Positives = 35/72 (47%), Gaps = 4/72 (5%)
Frame = +3
Query: 206 VYDMGGSFWRNIQSFPVSLSHISQLG----VYISGTLNWEVKTDNYTFIIVSLDLGTEEY 261
V+D + WR SF H + + V+++ L W + Y I+ LDL + +
Sbjct: 75 VFDSELNKWRKFVSFQDD--HFTHMNKNQVVFVNIALXWLTASSTY---ILVLDLSCDVW 239
Query: 262 SQLSLPYSPLYG 273
++ LPY+ +YG
Sbjct: 240 RKMQLPYNLIYG 275
>TC226557 similar to UP|Q9FJT7 (Q9FJT7) Pollen specific protein SF21
(AT5g56750/MIK19_22), partial (89%)
Length = 1515
Score = 31.2 bits (69), Expect = 0.65
Identities = 27/78 (34%), Positives = 34/78 (42%), Gaps = 6/78 (7%)
Frame = -1
Query: 14 LSPTNSSERSCYRFR*NLSSGLSACASTGNSSSLILNSSNFTFADLHLTSQTWRTP---- 69
+SPT SER C +L SGLS AS + + SSN DL ++ P
Sbjct: 774 ISPTKISERQCSFLNPSLMSGLSLIASRNRHTFKLCLSSNNLRQDLTISDSGN*VPPRIS 595
Query: 70 --DYCMISIPTTTYPQMP 85
Y +I TT P MP
Sbjct: 594 LLKYRFSNISLTT-PHMP 544
>CO980009
Length = 736
Score = 30.4 bits (67), Expect = 1.1
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Frame = -2
Query: 171 YSSFGFGYDCMNDTYKVVAVAVSCFREHK----EERVVKVYDMGGSFWRNIQSF-PVSLS 225
+S G+D N YKV + +SC + + + ++Y + WR + S PV
Sbjct: 678 HSYIALGFDSSNCDYKV--IRISCIVDDESFGLSAPLFELYPLATGSWRILDSISPVCYV 505
Query: 226 HISQLGVYISGTLNWEVK---TDNYTFIIVSLDLGTEEYSQLSLPYS 269
+ G ++W K T + + ++S L E + ++ LP S
Sbjct: 504 AGDAPDGFEDGLVHWVAKRYVTGAWYYFVLSFRLEDEMFGEVMLPES 364
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 29.3 bits (64), Expect = 2.5
Identities = 17/72 (23%), Positives = 37/72 (50%), Gaps = 2/72 (2%)
Frame = -1
Query: 165 VLVRFLYSSFGFGYDCMNDTYKVVAVAVSCFREHKEERVVKVYDMGGSFWR--NIQSFPV 222
V + ++SSF + +C++ + ++ + C R E + +M G+F +I P+
Sbjct: 1086 VCIT*IFSSFKYPSECIHISVRITFLFTLCIRLTYRESFPVLLEMSGTFSYDVSIAFTPM 907
Query: 223 SLSHISQLGVYI 234
+L+ + G+YI
Sbjct: 906 ALNSFAVTGLYI 871
>AI460954 similar to PIR|T05492|T054 thaumatin homolog T19K4.130 -
Arabidopsis thaliana, partial (12%)
Length = 244
Score = 28.9 bits (63), Expect = 3.2
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = -1
Query: 76 IPTTTYPQMPGLLCYSHLKTNMDIIS 101
+P + +P++PG +SHL TN+++++
Sbjct: 226 VPMSGFPRIPGHTVWSHLFTNVNVVA 149
>TC235149
Length = 435
Score = 28.5 bits (62), Expect = 4.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 300 FLVWQMKKFGVHNSWIQLYN 319
F+VW ++FGV SW +L N
Sbjct: 2 FVVWLTREFGVERSWTRLLN 61
>TC210006 similar to GB|BAA23185.1|2588824|D88930 phosphoglucose isomerase
{Dioscorea tokoro;} , partial (28%)
Length = 516
Score = 28.1 bits (61), Expect = 5.5
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 111 LESATAWFLKSYGTL*SLFSSVQLVGFVHL 140
L ++ +W KSY *S+FS+V ++ VHL
Sbjct: 366 LYNSISWSTKSYMKY*SIFSAVYILPIVHL 277
>BI893762 homologue to GP|11762186|gb| AT4g27960 {Arabidopsis thaliana},
partial (14%)
Length = 361
Score = 27.7 bits (60), Expect = 7.2
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -2
Query: 206 VYDMGGSFWRNIQSFPVSLSHISQLGVYI 234
++++GGSFWR++ SF + +++ +I
Sbjct: 108 LHEVGGSFWRSLSSFKIRFDAMAKTLFFI 22
>TC214125 homologue to UP|Q42897 (Q42897) Ubiquitin conjugating enzyme E2,
complete
Length = 813
Score = 27.7 bits (60), Expect = 7.2
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -3
Query: 208 DMGGSFWRNIQSFPVSLSHISQ--LGVY 233
++GGSFWR++ SF + L + + L +Y
Sbjct: 166 EVGGSFWRSLSSFRIRLEAMEEDSLSIY 83
>TC224894 homologue to GB|AAG40371.1|11762186|AF325019 AT4g27960 {Arabidopsis
thaliana;} , partial (84%)
Length = 911
Score = 27.7 bits (60), Expect = 7.2
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -2
Query: 206 VYDMGGSFWRNIQSFPVSLSHISQLGVYI 234
++++GGSFWR++ SF + +++ +I
Sbjct: 208 LHEVGGSFWRSLSSFKIRFDAMAKTLFFI 122
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.330 0.141 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,904,079
Number of Sequences: 63676
Number of extensions: 251703
Number of successful extensions: 1506
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of query: 319
length of database: 12,639,632
effective HSP length: 97
effective length of query: 222
effective length of database: 6,463,060
effective search space: 1434799320
effective search space used: 1434799320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0587.7