BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0587.6
(1079 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC232224 homologue to PIR|T51557|T51557 Exportin1 (XPO1) protein... 475 e-134
TC216810 similar to PIR|T51557|T51557 Exportin1 (XPO1) protein -... 441 e-124
TC208072 similar to PIR|T51557|T51557 Exportin1 (XPO1) protein -... 340 2e-93
BG156369 similar to PIR|T52638|T5 exportin 1 [validated] - Arabi... 243 4e-64
TC216809 similar to PIR|T51557|T51557 Exportin1 (XPO1) protein -... 92 2e-18
AW432610 80 4e-15
TC208095 similar to UP|Q8SBC8 (Q8SBC8) Transcription factor LIM,... 43 9e-04
CD391969 41 0.002
TC231715 weakly similar to UP|Q71VM2 (Q71VM2) Plakoglobin/armadi... 32 1.5
BE801431 31 3.4
TC231142 weakly similar to UP|Q7PC53 (Q7PC53) Chitinase B, parti... 30 4.4
TC225148 homologue to UP|Q9AV87 (Q9AV87) 60S ribosomal protein L... 30 5.7
TC216005 weakly similar to UP|Q8W156 (Q8W156) Deoxycytidine deam... 29 9.8
CO984562 29 9.8
>TC232224 homologue to PIR|T51557|T51557 Exportin1 (XPO1) protein -
Arabidopsis thaliana (fragment) {Arabidopsis thaliana;}
, partial (23%)
Length = 762
Score = 475 bits (1223), Expect = e-134
Identities = 234/253 (92%), Positives = 245/253 (96%)
Frame = +1
Query: 538 TKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHESHPGVQDMACDTFLK 597
TKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHE+HPGVQDMACDTFLK
Sbjct: 4 TKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLK 183
Query: 598 IVQKCKRKFVITQLGENEPFVSELLSGLSTTIVDLEPHQIHTFYESVGSMVQAESDSQKR 657
IVQKCKRKFVITQ+GENEPFVSELL+GL TI DLEPHQIH+FYESVG M+QAESD+QKR
Sbjct: 184 IVQKCKRKFVITQVGENEPFVSELLTGLPITIADLEPHQIHSFYESVGHMIQAESDAQKR 363
Query: 658 DEYLQRLMHLPNQKWLEIIGQARQNVDFLKDHDVIRTVLNILQTNTSVASSLGTYFLPQI 717
DEYLQRLM LPNQKW+EIIGQA QNVDFLKD DVIRTVLNI+QTNTSVA+SLGTYFLPQI
Sbjct: 364 DEYLQRLMELPNQKWMEIIGQAHQNVDFLKDQDVIRTVLNIMQTNTSVATSLGTYFLPQI 543
Query: 718 SLIFLDMLNVYRMYSELISKSIAEGGPYASRTSFVKLLRSVKRETLKLIETFLDKAEDQP 777
SLIFLDMLNVYRMYSELISKSI EGGP+ASRTS+VKLLRSVKRETLKLIETFLDKAEDQP
Sbjct: 544 SLIFLDMLNVYRMYSELISKSITEGGPFASRTSYVKLLRSVKRETLKLIETFLDKAEDQP 723
Query: 778 QIGKQFVPPMMDP 790
QIGKQFVPPMMDP
Sbjct: 724 QIGKQFVPPMMDP 762
>TC216810 similar to PIR|T51557|T51557 Exportin1 (XPO1) protein - Arabidopsis
thaliana (fragment) {Arabidopsis thaliana;} , partial
(22%)
Length = 1237
Score = 441 bits (1134), Expect = e-124
Identities = 218/236 (92%), Positives = 225/236 (94%)
Frame = +3
Query: 844 NFEDYPEHRLKFFSLLCAIATHCFHALICLSSQQLKFVMDSIIWAFRHTERNIAETGLNL 903
NFEDYPEHRLKFFSLL AIATHCF ALICLSSQQLK VMDSIIWAFRHTERNIAETGLNL
Sbjct: 3 NFEDYPEHRLKFFSLLRAIATHCFPALICLSSQQLKLVMDSIIWAFRHTERNIAETGLNL 182
Query: 904 LLEMLKKFQATEFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLAETGA 963
LLEMLKKFQ +EFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCL ETGA
Sbjct: 183 LLEMLKKFQGSEFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLLETGA 362
Query: 964 LTEPLWDAATNPYPYPSNAAFVLEYTIKLLSTSFPNMTAAEVTQFVNGLFESTNDLSTFK 1023
LTEPLWD AT+ Y Y SNA FV E+TIKLLSTSFPNMT+AEVTQFVNGLFESTNDLSTFK
Sbjct: 363 LTEPLWDVATSQYSYSSNAVFVREFTIKLLSTSFPNMTSAEVTQFVNGLFESTNDLSTFK 542
Query: 1024 NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSVPGLIAPSELQDEMLDS 1079
NHIRDFL+QSKEFSAQDNKDLYAEEAAAQRERERQRMLS+PGLIAPSELQDEM+DS
Sbjct: 543 NHIRDFLIQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPSELQDEMVDS 710
>TC208072 similar to PIR|T51557|T51557 Exportin1 (XPO1) protein - Arabidopsis
thaliana (fragment) {Arabidopsis thaliana;} , partial
(17%)
Length = 1106
Score = 340 bits (873), Expect = 2e-93
Identities = 167/179 (93%), Positives = 173/179 (96%)
Frame = +1
Query: 901 LNLLLEMLKKFQATEFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLAE 960
LNLLLEMLKKFQA+EFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFK HVLVLQHLFCLAE
Sbjct: 1 LNLLLEMLKKFQASEFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFKFHVLVLQHLFCLAE 180
Query: 961 TGALTEPLWDAATNPYPYPSNAAFVLEYTIKLLSTSFPNMTAAEVTQFVNGLFESTNDLS 1020
TGALTEPLWDAATNPYPYPSNAAFV E+TI LLSTSFPNMTA+EVTQFVNGL ESTNDL
Sbjct: 181 TGALTEPLWDAATNPYPYPSNAAFVREFTINLLSTSFPNMTASEVTQFVNGLLESTNDLP 360
Query: 1021 TFKNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSVPGLIAPSELQDEMLDS 1079
TFK HIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLS+PGL+APSELQDEM+DS
Sbjct: 361 TFKTHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLVAPSELQDEMVDS 537
>BG156369 similar to PIR|T52638|T5 exportin 1 [validated] - Arabidopsis
thaliana, partial (12%)
Length = 410
Score = 243 bits (619), Expect = 4e-64
Identities = 119/136 (87%), Positives = 128/136 (93%)
Frame = +2
Query: 596 LKIVQKCKRKFVITQLGENEPFVSELLSGLSTTIVDLEPHQIHTFYESVGSMVQAESDSQ 655
LKIVQKCKRKFVITQ+GENEPFVSELLSGL TI DLEPHQIHTFYESVG+M+QAESD+Q
Sbjct: 2 LKIVQKCKRKFVITQVGENEPFVSELLSGLPNTIADLEPHQIHTFYESVGNMIQAESDAQ 181
Query: 656 KRDEYLQRLMHLPNQKWLEIIGQARQNVDFLKDHDVIRTVLNILQTNTSVASSLGTYFLP 715
KRDEYLQ+LM LPNQ+W+EIIG+A QN DFLKD DVIR VLNILQTNTSVASSLGTYFLP
Sbjct: 182 KRDEYLQKLMVLPNQRWMEIIGKAHQNADFLKDQDVIRNVLNILQTNTSVASSLGTYFLP 361
Query: 716 QISLIFLDMLNVYRMY 731
QI+LIFLDMLNVYRMY
Sbjct: 362 QITLIFLDMLNVYRMY 409
>TC216809 similar to PIR|T51557|T51557 Exportin1 (XPO1) protein - Arabidopsis
thaliana (fragment) {Arabidopsis thaliana;} , partial
(5%)
Length = 689
Score = 91.7 bits (226), Expect = 2e-18
Identities = 45/55 (81%), Positives = 48/55 (86%)
Frame = +3
Query: 1025 HIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSVPGLIAPSELQDEMLDS 1079
HIRD +QSKEFSAQD KDLYAEEAA QRER RMLS+PGLIAPSELQDEM+DS
Sbjct: 3 HIRDXXIQSKEFSAQDXKDLYAEEAAXQRERXXXRMLSIPGLIAPSELQDEMVDS 167
>AW432610
Length = 411
Score = 80.5 bits (197), Expect = 4e-15
Identities = 38/41 (92%), Positives = 41/41 (99%)
Frame = +2
Query: 1039 QDNKDLYAEEAAAQRERERQRMLSVPGLIAPSELQDEMLDS 1079
QDNKDLYAEEAAAQRERERQRMLS+PGL+APSELQDEM+DS
Sbjct: 77 QDNKDLYAEEAAAQRERERQRMLSIPGLVAPSELQDEMVDS 199
>TC208095 similar to UP|Q8SBC8 (Q8SBC8) Transcription factor LIM, partial
(23%)
Length = 1310
Score = 42.7 bits (99), Expect = 9e-04
Identities = 25/64 (39%), Positives = 30/64 (46%)
Frame = +1
Query: 588 QDMACDTFLKIVQKCKRKFVITQLGENEPFVSELLSGLSTTIVDLEPHQIHTFYESVGSM 647
Q+MACDTF L+GL TI DLEPHQIH+FYES+ +
Sbjct: 778 QNMACDTF--------------------------LTGLPITIADLEPHQIHSFYESLSNY 879
Query: 648 VQAE 651
E
Sbjct: 880 CSFE 891
>CD391969
Length = 604
Score = 41.2 bits (95), Expect = 0.002
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = -3
Query: 622 LSGLSTTIVDLEPHQIHTFYESVGSMVQAE 651
L+GL TI DLEPHQIH+FYES+ + E
Sbjct: 497 LTGLPITIADLEPHQIHSFYESLSNYCSFE 408
>TC231715 weakly similar to UP|Q71VM2 (Q71VM2)
Plakoglobin/armadillo/beta-catenin-like protein
(Fragment), partial (54%)
Length = 577
Score = 32.0 bits (71), Expect = 1.5
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +3
Query: 86 PLEQRDGMKNFISDIIVQLSGNEASFRMERLYVNKLNIILVQILKH 131
P + D ++N + DII Q+ G++ S R +++ + + + Q L+H
Sbjct: 435 PKAEPDILENIVCDIISQIDGDDQSGRAKKMLAEMVQVSMEQSLRH 572
>BE801431
Length = 421
Score = 30.8 bits (68), Expect = 3.4
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 220 LHAFLSWIPLGYIFESPLLETLLKFFPLPVYRNLTLKCLIEVAALQFGDYY 270
+H FLS + + LL + K+F + +RNL LK VA+L F D Y
Sbjct: 164 VHLFLSTVTPAHSLLDLLLNSSFKYFDIRCFRNLVLK-FNTVASLNFLDPY 313
>TC231142 weakly similar to UP|Q7PC53 (Q7PC53) Chitinase B, partial (3%)
Length = 1130
Score = 30.4 bits (67), Expect = 4.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 475 DHDDTERQMLRKLSKQLGGEDWTWNNLNTLCWAIG 509
DH D +++ +++QLG E+W L CWAIG
Sbjct: 131 DHKD---KLVDVVAEQLGKEEWGRRLLKICCWAIG 226
>TC225148 homologue to UP|Q9AV87 (Q9AV87) 60S ribosomal protein L21, complete
Length = 723
Score = 30.0 bits (66), Expect = 5.7
Identities = 40/172 (23%), Positives = 67/172 (38%), Gaps = 5/172 (2%)
Frame = -1
Query: 843 KNFEDYPEHRLKFFSLLCAIATHCFHALICLSSQQLKFVMDSIIWAFRHTERNIAETGLN 902
KN Y EH++K F++L C SS K R T R T L
Sbjct: 693 KNISMYLEHQIK--------QQKYFNSLNCFSSNTKKD**SPNKKLRRPTTRMKLITSLE 538
Query: 903 LLLEML-KKFQATEFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLAET 961
++ +++ + + C + T+F T+ + A L G L +++L L +
Sbjct: 537 VIDDIIGNRGNCLQRCPLDHETWFGTLRLSLGADLLTL--GLGLSLELIILD----LPKA 376
Query: 962 GALTEPLWD----AATNPYPYPSNAAFVLEYTIKLLSTSFPNMTAAEVTQFV 1009
L+ P W NP PY S A ++++ P+ T A + + V
Sbjct: 375 ELLSAP*WHNMLHTHVNPLPYDSVADLLVDFDPNSTFGDIPDATGAAMVELV 220
>TC216005 weakly similar to UP|Q8W156 (Q8W156) Deoxycytidine deaminase,
partial (82%)
Length = 770
Score = 29.3 bits (64), Expect = 9.8
Identities = 15/39 (38%), Positives = 20/39 (50%)
Frame = +1
Query: 512 SGSMMEDQENRFLVMVIRDLLNLCEFTKGKDNKAVIASN 550
S + ED+EN+FL M I + E G+ AVI N
Sbjct: 85 SANAAEDRENKFLTMAIEEAYKAVESGHGRPFGAVIVRN 201
>CO984562
Length = 623
Score = 29.3 bits (64), Expect = 9.8
Identities = 15/49 (30%), Positives = 26/49 (52%)
Frame = -2
Query: 976 YPYPSNAAFVLEYTIKLLSTSFPNMTAAEVTQFVNGLFESTNDLSTFKN 1024
+P+ SNA L + I +L SF ++ + +F+N + LS +KN
Sbjct: 247 HPFFSNAILALIFYIYVLHFSFIHVYKTKERKFLNSFYVKKRVLSVYKN 101
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.137 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,296,972
Number of Sequences: 63676
Number of extensions: 587811
Number of successful extensions: 3211
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3211
length of query: 1079
length of database: 12,639,632
effective HSP length: 107
effective length of query: 972
effective length of database: 5,826,300
effective search space: 5663163600
effective search space used: 5663163600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0587.6