TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0587.12
         (583 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC210800 similar to UP|Q9M8Z1 (Q9M8Z1) T6K12.3 protein (AT3g0435...   440  e-124
TC219506 similar to UP|Q9M8Z1 (Q9M8Z1) T6K12.3 protein (AT3g0435...   335  4e-92
BE609440 weakly similar to GP|20197184|gb expressed protein {Ara...   181  8e-46
BF595188 similar to GP|15450691|gb| AT3g04350/T6K12_3 {Arabidops...   147  2e-35
CO984562                                                              130  2e-30
BE806798 similar to GP|20197184|gb| expressed protein {Arabidops...    70  3e-12
TC226828 similar to UP|Q93X57 (Q93X57) Beta-galactosidase  , par...    31  1.3
TC210620                                                               31  1.8
TC220017 similar to UP|Q7PC53 (Q7PC53) Chitinase B, partial (3%)       31  1.8
TC216083 similar to UP|Q84P21 (Q84P21) 4-coumarate-CoA ligase-li...    29  5.1
BG511114                                                               29  6.7

>TC210800 similar to UP|Q9M8Z1 (Q9M8Z1) T6K12.3 protein (AT3g04350/T6K12_3),
           partial (35%)
          Length = 986

 Score =  440 bits (1132), Expect = e-124
 Identities = 204/229 (89%), Positives = 219/229 (95%)
 Frame = +1

Query: 355 VKHGDLKGAKLYVHVKPALGGTFTDLAMWVFCPFNGPSTLKFGITSIAFSKVGEHVGDWE 414
           ++ GDLK AKLYVHVKPALGGTFTD+AMWVFCPFNGPSTLK GITS AFSKVGEHVGDWE
Sbjct: 10  IQAGDLKSAKLYVHVKPALGGTFTDIAMWVFCPFNGPSTLKIGITSRAFSKVGEHVGDWE 189

Query: 415 HFTLRICNFSGELWSIYFSQHSGGKWVDSYDLEYINGNKAIVYSSKSGHASFPHPGTYIQ 474
           HFTLRICNFSGELWSIYFSQHSGGKWVD+Y+LEYI+GNKA+VYSSK+GHAS+PHPGTY+Q
Sbjct: 190 HFTLRICNFSGELWSIYFSQHSGGKWVDAYELEYIDGNKAVVYSSKNGHASYPHPGTYLQ 369

Query: 475 GSSKLGIGIRNDACSSNLYVDSSIQYEIVAAEYLGDVVREPQWLQYMREWGPKIVYGSKT 534
           GSSKLGIGIRNDA  SNLYVDSS+QYE+VAAEYLGDVVREPQWLQ+MREWGPKIVY SKT
Sbjct: 370 GSSKLGIGIRNDATRSNLYVDSSVQYELVAAEYLGDVVREPQWLQFMREWGPKIVYDSKT 549

Query: 535 ELDKIINALPFRLRISFVNLVKKLPVELYGEEGPTGPKEKNNWIGDERW 583
           ELDKIINALP  LR SFV+L+KKLPVELYGEEGPTGPKEKNNWIGDERW
Sbjct: 550 ELDKIINALPGGLRNSFVSLIKKLPVELYGEEGPTGPKEKNNWIGDERW 696


>TC219506 similar to UP|Q9M8Z1 (Q9M8Z1) T6K12.3 protein (AT3g04350/T6K12_3),
           partial (36%)
          Length = 995

 Score =  335 bits (858), Expect = 4e-92
 Identities = 152/210 (72%), Positives = 176/210 (83%), Gaps = 1/210 (0%)
 Frame = +3

Query: 373 LGGTFTDLAMWVFCPFNGPSTLKFGITSIAFSKVGEHVGDWEHFTLRICNFSGELWSIYF 432
           LGG FTD+ MWVFCPFNGP+TLK  + +I  SK+GEHVGDWEHFTLRI NF+GELWS+YF
Sbjct: 3   LGGAFTDIVMWVFCPFNGPATLKVALMNIEMSKIGEHVGDWEHFTLRISNFTGELWSVYF 182

Query: 433 SQHSGGKWVDSYDLEYINGNKAIVYSSKSGHASFPHPGTYIQGSSKLGIGIRNDACSSNL 492
           SQHSGG W+ ++DLE+  GNK IVYSSK GHASFPHPGTY+QGSSKLGIG+RNDA  S  
Sbjct: 183 SQHSGGGWIHAFDLEFNKGNKPIVYSSKDGHASFPHPGTYLQGSSKLGIGVRNDAAPSKF 362

Query: 493 YVDSSIQYEIVAAEYLGD-VVREPQWLQYMREWGPKIVYGSKTELDKIINALPFRLRISF 551
            VDSSI+Y+IVAAEYLGD V+ EP WLQYMREWGP IVY S++E++KIIN LP  +R S 
Sbjct: 363 IVDSSIKYQIVAAEYLGDGVIAEPCWLQYMREWGPTIVYDSRSEIEKIINLLPLFVRFSV 542

Query: 552 VNLVKKLPVELYGEEGPTGPKEKNNWIGDE 581
            NL +  P ELYGEEGPTGPKEK+NW+GDE
Sbjct: 543 ENLFELFPTELYGEEGPTGPKEKDNWLGDE 632


>BE609440 weakly similar to GP|20197184|gb expressed protein {Arabidopsis
           thaliana}, partial (26%)
          Length = 461

 Score =  181 bits (459), Expect = 8e-46
 Identities = 87/153 (56%), Positives = 107/153 (69%), Gaps = 1/153 (0%)
 Frame = +1

Query: 304 WFFSNRAMLFRKGV-STGEAIDAGGSNLPIGGTNDGEFWIDLPCDDDDQREFVKHGDLKG 362
           WFFSN A+L++KG  S   +I   G+NLP     DG +W+DLP D  + +E VK GDLK 
Sbjct: 1   WFFSNGALLYKKGQESKPVSISPNGANLPQDPNIDGAYWVDLPADSTN-KERVKKGDLKS 177

Query: 363 AKLYVHVKPALGGTFTDLAMWVFCPFNGPSTLKFGITSIAFSKVGEHVGDWEHFTLRICN 422
           A  YVHVKP LGGTFTD+AMWVF PFNGP+  K    ++   K+GEHVGDWEH TLR+ N
Sbjct: 178 AISYVHVKPMLGGTFTDIAMWVFYPFNGPARAKVEFLTVNLGKIGEHVGDWEHVTLRVSN 357

Query: 423 FSGELWSIYFSQHSGGKWVDSYDLEYINGNKAI 455
           F+GEL  +YFSQHS G W DS  LE+ +GNK +
Sbjct: 358 FNGELKHVYFSQHSKGVWFDSSQLEFQSGNKPL 456


>BF595188 similar to GP|15450691|gb| AT3g04350/T6K12_3 {Arabidopsis
           thaliana}, partial (10%)
          Length = 249

 Score =  147 bits (370), Expect = 2e-35
 Identities = 68/82 (82%), Positives = 75/82 (90%)
 Frame = +2

Query: 240 VSVGTFFCSSCVNMGEQLPVVCLKNLNPVLPAMPCLQQIHALIEHYGPTVYFHPEEVYLP 299
           VSVGTFFC+SC N G++L VVCLKNLNPVLPAMP L  IHALIEHYGPTV+FHPEEVYLP
Sbjct: 2   VSVGTFFCTSCWNNGDELSVVCLKNLNPVLPAMPRLH*IHALIEHYGPTVFFHPEEVYLP 181

Query: 300 SSVDWFFSNRAMLFRKGVSTGE 321
           SSVDWFF+N A+L+RKGVSTGE
Sbjct: 182 SSVDWFFNNGALLYRKGVSTGE 247


>CO984562 
          Length = 623

 Score =  130 bits (327), Expect = 2e-30
 Identities = 66/156 (42%), Positives = 84/156 (53%)
 Frame = -1

Query: 427 LWSIYFSQHSGGKWVDSYDLEYINGNKAIVYSSKSGHASFPHPGTYIQGSSKLGIGIRND 486
           LW +YFSQHS G+W D+ +LE+ NGN+ + YSS  GHA FP PG  +QG    G+G+RND
Sbjct: 623 LWKVYFSQHSKGQWEDASELEFQNGNRPVAYSSLHGHALFPKPGLVMQGMR--GLGVRND 450

Query: 487 ACSSNLYVDSSIQYEIVAAEYLGDVVREPQWLQYMREWGPKIVYGSKTELDKIINALPFR 546
           A  S+  +D +  +EIVAAEYLG  +REP WL +   WGPK                   
Sbjct: 449 AAKSDAVMDMATWFEIVAAEYLGSQIREPPWLNFCMNWGPK------------------- 327

Query: 547 LRISFVNLVKKLPVELYGEEGPTGPKEKNNWIGDER 582
                              EGP GPK+K+ W GDER
Sbjct: 326 -------------------EGPKGPKQKDMWKGDER 276


>BE806798 similar to GP|20197184|gb| expressed protein {Arabidopsis
           thaliana}, partial (17%)
          Length = 412

 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 46/125 (36%), Positives = 67/125 (52%), Gaps = 1/125 (0%)
 Frame = +1

Query: 36  YSVIVHVCVITGQGFASGIINLGE-LEVCSVTSFELVWNSNVMVEMRKAVAFYKPVGIPD 94
           Y +  H     G GFA+GII+LG  L V  +++F  VW +           F++P G+ +
Sbjct: 61  YWINCHGF*FVGGGFATGIIDLGGGLLVSQISTFNKVWTTYEGGPNNLGATFFEPTGLSE 240

Query: 95  GFHVLSHYCQPSYNKPLWGFVLVAREVEACSSEKIEIGDQNKLPALRKPLDYTLVWCSNA 154
           GF +L  YCQP+ NKPL G VLV ++  + S+            AL +P+DY LVW  N 
Sbjct: 241 GFFMLGCYCQPN-NKPLHGCVLVGKDNSSTSN-----------GALAEPVDYKLVW--NT 378

Query: 155 GSKEI 159
            S++I
Sbjct: 379 KSQKI 393


>TC226828 similar to UP|Q93X57 (Q93X57) Beta-galactosidase  , partial (47%)
          Length = 1488

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -2

Query: 330 LPIGGTNDGEFWIDLPCDDDDQREFVKHGDLKGAKLYVH--VKPALGGTFTDLAMWVFCP 387
           LP+G  +D   W  + CD   Q  F++H D     L +H  V+PA   T+      + CP
Sbjct: 875 LPLGFNHDRGTWYSV-CDGFPQ--FLRHLDAL*GPL*LHESVQPASEATYVGQYRPMLCP 705

Query: 388 FNGPSTLKFGITSIA 402
           F   S     + SIA
Sbjct: 704 FTQASPFPIPVKSIA 660


>TC210620 
          Length = 698

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 143 PLDYTLVWCSNAGSKEIVTSSAYFWLPQPPEGYKALGYLVTKKPDKPNLDEMSCVRADLT 202
           P+ Y LVW       E   +    W P+ P+G+ A G +      +P  D + C+   L 
Sbjct: 28  PMGYDLVW---RNCPEDYVTPLSIWHPRAPDGFVAPGCVAIAGYLEPEPDLVYCIAESLV 198

Query: 203 DKCE 206
           ++ E
Sbjct: 199 EETE 210


>TC220017 similar to UP|Q7PC53 (Q7PC53) Chitinase B, partial (3%)
          Length = 825

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 317 VSTGEAIDAGGSNLPIGGTNDGEFWIDLPCDDDDQ 351
           V   +A++AGG+++  G  +DGE   ++  DDDDQ
Sbjct: 67  VGQSDALNAGGADVDGGNDDDGEEEDEVDDDDDDQ 171


>TC216083 similar to UP|Q84P21 (Q84P21) 4-coumarate-CoA ligase-like protein,
           partial (80%)
          Length = 1411

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = -1

Query: 317 VSTGEAIDAGGS--NLPIGGTNDGEFWIDLPCDDDDQREFVKHGD--LKGAKLYVHVKP 371
           VS  E +D G    +L +G  +DG      P  + DQ  +VKHGD   +G  L +HV+P
Sbjct: 847 VSGAEPLDRGEHVVHLELGEHDDGGAGSQKPRGEGDQAVYVKHGDRAYEGFVL-LHVEP 674


>BG511114 
          Length = 357

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 14/26 (53%), Positives = 15/26 (56%)
 Frame = +2

Query: 47  GQGFASGIINLGELEVCSVTSFELVW 72
           G   A G I LGE+EV  V  FE VW
Sbjct: 278 GGSXACGRICLGEIEVIKVNKFEKVW 355


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.320    0.138    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,037,389
Number of Sequences: 63676
Number of extensions: 519281
Number of successful extensions: 2394
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2387
length of query: 583
length of database: 12,639,632
effective HSP length: 102
effective length of query: 481
effective length of database: 6,144,680
effective search space: 2955591080
effective search space used: 2955591080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)