TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0587.1
         (134 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI892696                                                               74  3e-14
TC226010 weakly similar to UP|Q8YPJ4 (Q8YPJ4) 50S ribosomal prot...    26  6.4

>BI892696 
          Length = 437

 Score = 73.6 bits (179), Expect = 3e-14
 Identities = 36/46 (78%), Positives = 38/46 (82%)
 Frame = +1

Query: 8   RRILELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSM 53
           RRI+ELEASRDLS  WL  +MD FYAAVETLSNPT  GK MAVGSM
Sbjct: 298 RRIVELEASRDLSRIWLHVDMDAFYAAVETLSNPTLKGKPMAVGSM 435


>TC226010 weakly similar to UP|Q8YPJ4 (Q8YPJ4) 50S ribosomal protein L18,
           partial (78%)
          Length = 860

 Score = 25.8 bits (55), Expect = 6.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 31  FYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFGVRSA 71
           F +  +TLS PTF G++           S H  +K G R A
Sbjct: 161 FTSKPQTLSLPTFRGRSQRQDPQGRQDRSPHSHQKEGRRDA 283


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.333    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,332,949
Number of Sequences: 63676
Number of extensions: 57837
Number of successful extensions: 308
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of query: 134
length of database: 12,639,632
effective HSP length: 87
effective length of query: 47
effective length of database: 7,099,820
effective search space: 333691540
effective search space used: 333691540
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (25.0 bits)