BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0559.7
(442 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC221502 similar to UP|Q6Z4S6 (Q6Z4S6) Tetratricopeptide repeat-... 337 6e-93
TC228628 weakly similar to UP|Q6Z4S6 (Q6Z4S6) Tetratricopeptide ... 269 2e-72
TC228629 similar to UP|Q6Z4S6 (Q6Z4S6) Tetratricopeptide repeat-... 148 4e-36
TC219020 similar to UP|SRB7_SCHPO (O94376) RNA polymerase II med... 45 5e-05
TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 39 0.006
TC221099 weakly similar to GB|AAF13926.1|6478621|AF195870 brain ... 38 0.010
TC215452 similar to UP|P93488 (P93488) NAP1Ps, partial (29%) 37 0.014
TC227390 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacety... 37 0.014
TC224564 similar to PIR|T51159|T51159 HMG protein [imported] - A... 37 0.014
TC213749 37 0.018
TC224567 similar to PIR|T51159|T51159 HMG protein [imported] - A... 37 0.023
TC219641 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 37 0.023
TC215449 similar to UP|P93488 (P93488) NAP1Ps, partial (97%) 37 0.023
TC208773 similar to PIR|T51159|T51159 HMG protein [imported] - A... 37 0.023
TC224760 similar to UP|O04692 (O04692) DNA-binding protein, part... 37 0.023
TC215450 similar to UP|P93488 (P93488) NAP1Ps, partial (30%) 36 0.030
CO979215 36 0.040
TC210126 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C2... 35 0.052
TC203361 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%) 35 0.068
TC218918 UP|Q39892 (Q39892) Nucleosome assembly protein 1, complete 35 0.068
>TC221502 similar to UP|Q6Z4S6 (Q6Z4S6) Tetratricopeptide repeat-containing
protein-like, partial (21%)
Length = 829
Score = 337 bits (864), Expect = 6e-93
Identities = 184/243 (75%), Positives = 204/243 (83%), Gaps = 4/243 (1%)
Frame = +3
Query: 1 MVEEAPASETSVSMAPSEEAVAVDGTLNPSEHGKSEITNGATVDSAAIGGAESASNAETS 60
M EEAPASETSV+M E + VDGTLN SE+ KS G +VD+AA G ++ SNAE S
Sbjct: 117 MAEEAPASETSVTMPQPAEVITVDGTLNSSENDKS----GISVDAAAHSGEKTVSNAEPS 284
Query: 61 GKN---SLELAVELMDKGTKAMKEDDFGEAAENFSRALEIRVANYGELAPECVNTYYKYG 117
G + SLELA ELM+KG KA+KE+DFGEAA+NFSRALEIRVA+YGELAPECV+TYYKYG
Sbjct: 285 GSDPQKSLELANELMEKGNKAIKENDFGEAADNFSRALEIRVAHYGELAPECVHTYYKYG 464
Query: 118 CALLYKAQEEADPLGDVPKKQEGSQHGSSKDESVKSTINAAESSTAASFSSNAEQDIASN 177
CALLYKAQEEADPL DVPKK++GSQHGS+KD SVKS+ N AESST ASFSSNAEQD+ SN
Sbjct: 465 CALLYKAQEEADPLADVPKKEDGSQHGSNKDGSVKSSFN-AESST-ASFSSNAEQDVTSN 638
Query: 178 DQESAVDDESTKNYQEEDDEDSDAED-TEADEDESDLDLAWKMLDIARAIVEKQCVNTIE 236
DQ AVDD STKN QEEDDEDSDAED EADEDE+DLDLAWKMLDIARAIVEKQ VNTIE
Sbjct: 639 DQGGAVDDGSTKNDQEEDDEDSDAEDLAEADEDETDLDLAWKMLDIARAIVEKQSVNTIE 818
Query: 237 HVD 239
VD
Sbjct: 819 QVD 827
>TC228628 weakly similar to UP|Q6Z4S6 (Q6Z4S6) Tetratricopeptide
repeat-containing protein-like, partial (25%)
Length = 920
Score = 269 bits (688), Expect = 2e-72
Identities = 162/246 (65%), Positives = 176/246 (70%), Gaps = 36/246 (14%)
Frame = +2
Query: 232 VNTIEHVDILSTLAEISLEREEFENSLSDYQKALSILEQLVD------------------ 273
VNTIE VDILSTLA+++LERE+FE SLSDYQKAL+ILEQLV+
Sbjct: 2 VNTIEQVDILSTLADVALEREDFETSLSDYQKALTILEQLVEPDDRKIADLNFRICLCLE 181
Query: 274 --SKPEEAIAYCEKAASVCKARLDRLTNEVKS---ITPASEA-----------KNKSIED 317
SKP+EAIAYC+KA SVCKARL RLTNEVKS +T ASE N SI D
Sbjct: 182 VSSKPQEAIAYCQKATSVCKARLHRLTNEVKSCSDLTSASELAQDVPACPKSESNNSILD 361
Query: 318 KQAEIETLTGLSSDLENKLEDLQLLVSNPKSTLSELLEKVAAKAGGGKESIPAKVSSSQL 377
KQ+EIETL GLSS+LE KLEDLQ LVSNPKS L+E+L AAKAG KES A VSSSQL
Sbjct: 362 KQSEIETLKGLSSELEKKLEDLQQLVSNPKSILAEILGIAAAKAGNVKESSSAMVSSSQL 541
Query: 378 ATANSSGGFDSPTISTAHSNGSAAGVTHLGVVGRGVKRTSLA--PEASAPKKPALESTEG 435
ATAN SGGFDSPTISTAH+NGS GVTHLGVVGRGVKR S A E S PKKP LESTE
Sbjct: 542 ATANGSGGFDSPTISTAHTNGS-GGVTHLGVVGRGVKRASNATPAEGSTPKKPGLESTED 718
Query: 436 KGDSGS 441
K D S
Sbjct: 719 KDDGNS 736
>TC228629 similar to UP|Q6Z4S6 (Q6Z4S6) Tetratricopeptide repeat-containing
protein-like, partial (8%)
Length = 530
Score = 148 bits (374), Expect = 4e-36
Identities = 84/114 (73%), Positives = 90/114 (78%), Gaps = 2/114 (1%)
Frame = +3
Query: 330 SDLENKLEDLQLLVSNPKSTLSELLEKVAAKAGGGKESIPAKVSSSQLATANSSGGFDSP 389
S+LE KLEDLQ LVSNPKS L+E+L AAK G KES A VSSS+LATANSSGGFDSP
Sbjct: 3 SELEKKLEDLQQLVSNPKSILAEILGIAAAKVGNVKESSSATVSSSRLATANSSGGFDSP 182
Query: 390 TISTAHSNGSAAGVTHLGVVGRGVKRTSLA--PEASAPKKPALESTEGKGDSGS 441
TISTAH+NGS GVTHLGVVGRGVKR S A E S PKKPALESTE KGD +
Sbjct: 183 TISTAHTNGS-GGVTHLGVVGRGVKRASNATPAEGSTPKKPALESTEDKGDGNA 341
>TC219020 similar to UP|SRB7_SCHPO (O94376) RNA polymerase II mediator
complex protein srb7, partial (14%)
Length = 1446
Score = 45.4 bits (106), Expect = 5e-05
Identities = 61/249 (24%), Positives = 108/249 (42%), Gaps = 20/249 (8%)
Frame = +2
Query: 146 SKDESVKSTINAAESSTAASFSSNAEQDIASNDQESAVDDESTKNYQEEDDEDSDAEDTE 205
S++E +K I AES ++ SFS N E + +N Q DE +E + ++
Sbjct: 680 SENEDLKRQILDAESKSSQSFSEN-ELLVGTNIQLKTKIDE----LEESLNHALSEKEAA 844
Query: 206 ADEDESDLDLAWKMLDIARAIVEKQCVNTIEHVDILSTLAEISLEREEFENSLSDYQKAL 265
A E S + ++ D+ E Q N + + S L E E E+ + + L
Sbjct: 845 AQELVSHKNSITELNDLQSKSSEIQRANEARTLKVESQLQEALQRHTEKESETKELNEKL 1024
Query: 266 SILE---QLVDSKPEEAIAYCEKAASVCKARLDRLTNEVKSI-TPASEAKNKSIEDKQ-- 319
+ LE +L + EA+A + KA L++ ++K + E +NKS+ ++
Sbjct: 1025NTLEGQIKLFEEHAREAVA----TSGTHKAELEQSLIKLKHLEIVIEELQNKSLHHEKET 1192
Query: 320 ----AEIETLTGLSSDLENKLEDLQ-----LLVSNPKS-----TLSELLEKVAAKAGGGK 365
E L + E+KL DLQ LV ++ TL + +EK+ K
Sbjct: 1193AGLNEENSKLNQEIASYESKLSDLQEKLSAALVEKEETDKELLTLKDAMEKLGTKHSAEV 1372
Query: 366 ESIPAKVSS 374
+++ +++SS
Sbjct: 1373QTLNSQISS 1399
>TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 1056
Score = 38.5 bits (88), Expect = 0.006
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = -3
Query: 138 QEGSQHGSSKDESVKSTINAAESSTAASFSSNAEQDIASNDQESAVDDESTKNYQEED-- 195
++G +G++ + KS A A N E+D + + DDE + EED
Sbjct: 544 EDGGGYGNNSNN--KSNSKKAPEGGAGGAEENGEEDEDEDGDDQDDDDEDDDDDDEEDEA 371
Query: 196 --DEDSD-AEDTEADEDESD 212
+ED D AED E +EDE D
Sbjct: 370 GEEEDEDGAEDEENEEDEED 311
Score = 36.2 bits (82), Expect = 0.030
Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 15/143 (10%)
Frame = -3
Query: 87 AAENFSRALEIRVANYGELAPEC-----VNTYYKYGCALLYKAQEEADPLGDVPKKQEGS 141
AAE + L V LAP+ +NT G + + ++ D G+ EG
Sbjct: 778 AAEFLATLLASAVVKASLLAPDLYRLLLINTPTAKGESKIQSEDKQRDAEGEDGNDDEGD 599
Query: 142 QH-------GSSKDE-SVKSTINAAESSTAASFSSNAEQDIASNDQESAVDDESTKNYQE 193
G ++E S + +S S S A + A +E+ +DE +
Sbjct: 598 DDDDGDGGFGEGEEELSSEDGGGYGNNSNNKSNSKKAPEGGAGGAEENGEEDEDEDGDDQ 419
Query: 194 EDDEDSDAEDTEADE--DESDLD 214
+DD++ D +D E DE +E D D
Sbjct: 418 DDDDEDDDDDDEEDEAGEEEDED 350
>TC221099 weakly similar to GB|AAF13926.1|6478621|AF195870 brain tumor
{Drosophila melanogaster;} , partial (4%)
Length = 473
Score = 37.7 bits (86), Expect = 0.010
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +2
Query: 138 QEGSQHGSSKDESVKSTINAAESSTAASFSSNAEQDIASNDQESAVDDESTKNYQEEDDE 197
QE HG S D KS N + + A + + +D+E+ + D ++ ++ D
Sbjct: 227 QERENHGGSSDSDTKSCSNTSIDNRADAKGGSI------SDEETQLSDHDEEDQKQGDAM 388
Query: 198 DSDAEDTEAD 207
D+D EDTE D
Sbjct: 389 DNDDEDTEED 418
>TC215452 similar to UP|P93488 (P93488) NAP1Ps, partial (29%)
Length = 609
Score = 37.4 bits (85), Expect = 0.014
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 139 EGSQHGSSKDESVKSTINAAESSTAAS-FSSNAEQDIASNDQESAVDDESTKNYQEEDDE 197
E Q+ +D + STI A S F+ A Q D E DDE + +ED+E
Sbjct: 12 EELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQGDEFGDLEDDEDDEDIEEDDDEDEE 191
Query: 198 DSDAEDTEADEDE 210
D D +D + D++E
Sbjct: 192 DDDDDDDDDDDEE 230
Score = 29.6 bits (65), Expect = 2.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 180 ESAVDDESTKNYQEEDDEDSDAEDTEADEDESDLD 214
E+ DE +EDDED + +D E +ED+ D D
Sbjct: 105 EAIQGDEFGDLEDDEDDEDIEEDDDEDEEDDDDDD 209
>TC227390 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (24%)
Length = 808
Score = 37.4 bits (85), Expect = 0.014
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Frame = +1
Query: 123 KAQEEADPLGDVP--KKQEGSQHGSSKD----ESVKSTINAAESSTAASFSSNAEQDIAS 176
+ E D DVP K + G +++ ES K+ A+ S+ + +
Sbjct: 4 REDEFTDSEEDVPLLKAENGKPETKAEELKVPESKKAVAKASASAKQVKIVEPKKDNEED 183
Query: 177 NDQESAVDDESTKNYQEEDDEDSDAEDTEADEDESD 212
+D +S DD+ + +E +D DSD++D D+++ D
Sbjct: 184 SDDDSDEDDDFGSSDEEMEDADSDSDDESDDKEDDD 291
Score = 32.3 bits (72), Expect = 0.44
Identities = 24/90 (26%), Positives = 46/90 (50%), Gaps = 5/90 (5%)
Frame = +1
Query: 123 KAQEEADPLGDVPKKQEGSQHGSSKDESVKSTINAAESSTAASFSSNAEQDIASNDQE-- 180
K + +A+ L VP+ ++ S+ + VK ++ + S+ + D S+D+E
Sbjct: 64 KPETKAEEL-KVPESKKAVAKASASAKQVKIVEPKKDNEEDSDDDSDEDDDFGSSDEEME 240
Query: 181 ---SAVDDESTKNYQEEDDEDSDAEDTEAD 207
S DDES +E+DDE++ ++ +AD
Sbjct: 241 DADSDSDDESDD--KEDDDEETHPKNKKAD 324
>TC224564 similar to PIR|T51159|T51159 HMG protein [imported] - Arabidopsis
thaliana {Arabidopsis thaliana;} , partial (82%)
Length = 833
Score = 37.4 bits (85), Expect = 0.014
Identities = 27/74 (36%), Positives = 40/74 (53%), Gaps = 5/74 (6%)
Frame = +1
Query: 144 GSSKDESVKSTINAAESSTAASFSSNAEQDIASNDQE---SAVDDESTKNYQEEDDED-- 198
G K +S+ S A + AA + E+ I + D++ SA D+ES K+ E +DED
Sbjct: 346 GGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYDKKQASSADDEESDKSKSEVNDEDDA 525
Query: 199 SDAEDTEADEDESD 212
S E+ E DE+E D
Sbjct: 526 SGEEEEEDDEEEED 567
Score = 28.5 bits (62), Expect = 6.3
Identities = 12/52 (23%), Positives = 29/52 (55%)
Frame = +1
Query: 149 ESVKSTINAAESSTAASFSSNAEQDIASNDQESAVDDESTKNYQEEDDEDSD 200
E + + ++S+A S+ + +++ +++ ++E + +EEDDED D
Sbjct: 427 EKLIKAYDKKQASSADDEESDKSKSEVNDEDDASGEEEEEDDEEEEDDEDDD 582
>TC213749
Length = 669
Score = 37.0 bits (84), Expect = 0.018
Identities = 17/64 (26%), Positives = 37/64 (57%)
Frame = +1
Query: 289 VCKARLDRLTNEVKSITPASEAKNKSIEDKQAEIETLTGLSSDLENKLEDLQLLVSNPKS 348
V + +L T+ ++S+ + +K+I+ + EI + + LEN++ + +L++SNP +
Sbjct: 13 VLEGKLQSATDRIESLMNQLQESDKTIDSLRLEIHSFKESNGKLENEIRNQKLIISNPDA 192
Query: 349 TLSE 352
SE
Sbjct: 193 QHSE 204
>TC224567 similar to PIR|T51159|T51159 HMG protein [imported] - Arabidopsis
thaliana {Arabidopsis thaliana;} , partial (71%)
Length = 876
Score = 36.6 bits (83), Expect = 0.023
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = +2
Query: 144 GSSKDESVKSTINAAESSTAASFSSNAEQDIASNDQE---SAVDDESTKNYQEEDDEDSD 200
G K +S+ S A + AA + E+ I + +++ SA DDES K+ E +DED
Sbjct: 389 GGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDDESDKSKSEVNDEDDA 568
Query: 201 AEDTEADEDESD 212
+ + + EDE D
Sbjct: 569 SGEEDHQEDEDD 604
>TC219641 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 942
Score = 36.6 bits (83), Expect = 0.023
Identities = 24/95 (25%), Positives = 39/95 (40%)
Frame = +1
Query: 120 LLYKAQEEADPLGDVPKKQEGSQHGSSKDESVKSTINAAESSTAASFSSNAEQDIASNDQ 179
LL K ++D GD ++E +D+ + E A + E + A
Sbjct: 361 LLNKDASDSDEDGD---EEEDDDDADDQDDEEGDEDFSGEGEEEADPEDDPEANGAGGSD 531
Query: 180 ESAVDDESTKNYQEEDDEDSDAEDTEADEDESDLD 214
DD+ + ++D+ D D ED E EDE + D
Sbjct: 532 SDGDDDDDGGDDDDDDNGDDDGEDEEEGEDEDEED 636
Score = 36.2 bits (82), Expect = 0.030
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = +1
Query: 125 QEEADPLGDVPKKQEGSQHGSSKDESVKSTINAAESSTAASFSSNAEQDIASNDQESAVD 184
+EE D D +EG + S + E + E++ A S+ + D D D
Sbjct: 403 EEEDDDDADDQDDEEGDEDFSGEGEEEADPEDDPEANGAGGSDSDGDDDDDGGDD----D 570
Query: 185 DESTKNYQEEDDEDSDAEDTEADED 209
D+ + ED+E+ + ED E +ED
Sbjct: 571 DDDNGDDDGEDEEEGEDEDEEDEED 645
>TC215449 similar to UP|P93488 (P93488) NAP1Ps, partial (97%)
Length = 1495
Score = 36.6 bits (83), Expect = 0.023
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +2
Query: 139 EGSQHGSSKDESVKSTINAAESSTAAS-FSSNAEQDIASNDQESAVDDESTK-NYQEEDD 196
E Q+ +D + STI A S F+ A Q D E DDE + + EE++
Sbjct: 917 EELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQGDEFGDLEDDEDDEDIEEDDDEEEE 1096
Query: 197 EDSDAEDTEADEDES 211
ED D +D E DE+ES
Sbjct: 1097EDEDDDDDEDDEEES 1141
Score = 28.5 bits (62), Expect = 6.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 180 ESAVDDESTKNYQEEDDEDSDAEDTEADEDESDLD 214
E+ DE +EDDED + +D E +E++ D D
Sbjct: 1010 EAIQGDEFGDLEDDEDDEDIEEDDDEEEEEDEDDD 1114
>TC208773 similar to PIR|T51159|T51159 HMG protein [imported] - Arabidopsis
thaliana {Arabidopsis thaliana;} , partial (12%)
Length = 1260
Score = 36.6 bits (83), Expect = 0.023
Identities = 30/101 (29%), Positives = 50/101 (48%)
Frame = +3
Query: 162 TAASFSSNAEQDIASNDQESAVDDESTKNYQEEDDEDSDAEDTEADEDESDLDLAWKMLD 221
T S+A+ D+A+ DQ ++DD S + + E++ED D +D E E + + A ++L
Sbjct: 51 TVQKLESHAKFDLANLDQCLSLDDNSGYDEEYEEEEDDDNDDIE--EQDWIEEKAKQLLH 224
Query: 222 IARAIVEKQCVNTIEHVDILSTLAEISLEREEFENSLSDYQ 262
+A V +D L TL + REE S + Y+
Sbjct: 225 CVKARVSAH-----G*IDYLDTLL-LDFFREELSGSRNQYK 329
>TC224760 similar to UP|O04692 (O04692) DNA-binding protein, partial (73%)
Length = 654
Score = 36.6 bits (83), Expect = 0.023
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = +3
Query: 144 GSSKDESVKSTINAAESSTAASFSSNAEQDIASNDQE---SAVDDESTKNYQEEDDEDSD 200
G K +S+ S A + AA + E+ I + +++ SA DDES K+ E +DED
Sbjct: 207 GGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDDESDKSKSEVNDEDDA 386
Query: 201 AEDTEADEDESD 212
+ + + EDE D
Sbjct: 387 SGEEDHQEDEDD 422
>TC215450 similar to UP|P93488 (P93488) NAP1Ps, partial (30%)
Length = 672
Score = 36.2 bits (82), Expect = 0.030
Identities = 26/72 (36%), Positives = 36/72 (49%), Gaps = 2/72 (2%)
Frame = +3
Query: 142 QHGSSKDESVKSTINAAESSTAAS-FSSNAEQDIASNDQESAVDDESTK-NYQEEDDEDS 199
Q+ +D + STI A S F+ A Q D E DDE + + EE++ED
Sbjct: 93 QNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQGDEFGDLEDDEDDEDIEEDDDEEEEEDE 272
Query: 200 DAEDTEADEDES 211
D +D E DE+ES
Sbjct: 273 DDDDDEDDEEES 308
Score = 28.5 bits (62), Expect = 6.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 180 ESAVDDESTKNYQEEDDEDSDAEDTEADEDESDLD 214
E+ DE +EDDED + +D E +E++ D D
Sbjct: 177 EAIQGDEFGDLEDDEDDEDIEEDDDEEEEEDEDDD 281
>CO979215
Length = 724
Score = 35.8 bits (81), Expect = 0.040
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = -1
Query: 138 QEGSQHGSSKDESVKSTINAAESSTAASFSSNAEQDIASNDQESAVDDESTKNYQEEDDE 197
QE HG S D +S N + + A + +D+E+ + D ++ +++D
Sbjct: 322 QEREDHGGSSDSDTESCSNTSIENIAKAKGGTI------SDEETQLSDHDDEDQKQDDAM 161
Query: 198 DSDAEDTEADED 209
D D +D + +ED
Sbjct: 160 DDDDDDEDTEED 125
>TC210126 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23), partial
(7%)
Length = 735
Score = 35.4 bits (80), Expect = 0.052
Identities = 25/87 (28%), Positives = 36/87 (40%)
Frame = +3
Query: 126 EEADPLGDVPKKQEGSQHGSSKDESVKSTINAAESSTAASFSSNAEQDIASNDQESAVDD 185
E+ D GD + Q +DE S + E D +N S DD
Sbjct: 339 EDDDKDGDEDDEDGHDQDDDGEDEEF--------SGEEGDEEGDPEDDPEANGGGS--DD 488
Query: 186 ESTKNYQEEDDEDSDAEDTEADEDESD 212
+ N EEDD+D + E+ E DE+E +
Sbjct: 489 DDDDNDNEEDDDDGEDEEEEEDEEEDE 569
>TC203361 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%)
Length = 1090
Score = 35.0 bits (79), Expect = 0.068
Identities = 18/75 (24%), Positives = 35/75 (46%)
Frame = -1
Query: 138 QEGSQHGSSKDESVKSTINAAESSTAASFSSNAEQDIASNDQESAVDDESTKNYQEEDDE 197
++G +G++ + KS A A N E+D + + D++ + +E+DE
Sbjct: 511 EDGGGYGNNSNN--KSNSKKAPEGGAGGAEENGEEDEDEDGDDQDDDEDDDDDDDDEEDE 338
Query: 198 DSDAEDTEADEDESD 212
+ ED + EDE +
Sbjct: 337 GGEEEDEDGAEDEEN 293
Score = 33.1 bits (74), Expect = 0.26
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Frame = -1
Query: 139 EGSQHGSSKDESV--KSTINAAESSTAASFSSNAEQDIASNDQESAVDDESTKNYQEEDD 196
EG + SS+D ++ N + S A + ++ D++ DD+ ++DD
Sbjct: 535 EGEEELSSEDGGGYGNNSNNKSNSKKAPEGGAGGAEENGEEDEDEDGDDQDDDEDDDDDD 356
Query: 197 EDSD-----------AEDTEADEDESD 212
+D + AED E +EDE D
Sbjct: 355 DDEEDEGGEEEDEDGAEDEENEEDEED 275
Score = 32.3 bits (72), Expect = 0.44
Identities = 30/133 (22%), Positives = 47/133 (34%), Gaps = 5/133 (3%)
Frame = -1
Query: 87 AAENFSRALEIRVANYGELAPEC-----VNTYYKYGCALLYKAQEEADPLGDVPKKQEGS 141
AAE + L V LAP+ NT G ++ D G+ EG
Sbjct: 745 AAEVLATLLASAVVKATLLAPDLYRLLLTNTPTTKGERKTQSQDKQRDAEGEDGNDDEGD 566
Query: 142 QHGSSKDESVKSTINAAESSTAASFSSNAEQDIASNDQESAVDDESTKNYQEEDDEDSDA 201
D S + +N+ S + +N +E++DED D
Sbjct: 565 DDDDG-DGGFGEGEEELSSEDGGGYGNNSNNKSNSKKAPEGGAGGAEENGEEDEDEDGDD 389
Query: 202 EDTEADEDESDLD 214
+D + D+D+ D D
Sbjct: 388 QDDDEDDDDDDDD 350
>TC218918 UP|Q39892 (Q39892) Nucleosome assembly protein 1, complete
Length = 1507
Score = 35.0 bits (79), Expect = 0.068
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +1
Query: 139 EGSQHGSSKDESVKSTINAAESSTAAS-FSSNAEQDIASNDQESAVDDESTKNYQEEDDE 197
E Q+ +D + ST+ A S F+ A Q D E D+E E++DE
Sbjct: 877 EELQNQMEQDYDIGSTLRDKIIPHAVSWFTGEAAQGDEFEDLEDDEDEE------EDEDE 1038
Query: 198 DSDAEDTEADEDESDLDLAWK 218
D D ED E ++DE + D K
Sbjct: 1039DEDEEDDEDEDDEEEDDTKTK 1101
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.301 0.120 0.309
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,820,931
Number of Sequences: 63676
Number of extensions: 134133
Number of successful extensions: 1395
Number of sequences better than 10.0: 145
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of query: 442
length of database: 12,639,632
effective HSP length: 100
effective length of query: 342
effective length of database: 6,272,032
effective search space: 2145034944
effective search space used: 2145034944
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0559.7