TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0545.3
         (2087 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CF922488                                                              199  1e-50
NP595172 polyprotein [Glycine max]                                    197  5e-50
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...   156  1e-37
NP395547 reverse transcriptase [Glycine max]                          151  3e-36
NP395548 reverse transcriptase [Glycine max]                          143  7e-34
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...   136  8e-32
NP334778 reverse transcriptase [Glycine max]                          129  2e-29
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...   105  3e-22
TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotei...   102  1e-21
BI316922                                                              101  3e-21
AW184779                                                               60  1e-16
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...    65  1e-16
BI321666                                                               78  5e-14
BQ628592                                                               72  2e-12
BE802896                                                               66  1e-10
TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)          56  2e-10
BG839293                                                               65  2e-10
BE660092 weakly similar to GP|9884624|dbj retroelement pol polyp...    62  3e-09
BG725601 similar to PIR|H86337|H86 protein F5M15.26 [imported] -...    62  3e-09
BI317507                                                               59  3e-08

>CF922488 
          Length = 741

 Score =  199 bits (506), Expect = 1e-50
 Identities = 105/255 (41%), Positives = 163/255 (63%)
 Frame = +3

Query: 1112 VIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIA* 1171
            V+K++GK+ +C+D+RDLN A+PKD++ +P   ++VD+       S +DG+SGYNQI IA 
Sbjct: 3    VLKEDGKV*MCVDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAP 182

Query: 1172 EDVSKTAFRCPGALGTYEWVVMPFGLKNAGLKNAGATYQRVMNTIFHDFIETFMQVYIDD 1231
            ED+ KT F      GT+ +  M FGLKN G     ATYQR M  +F D +   ++VY+DD
Sbjct: 183  EDMEKTTFIT--LWGTFCYKAMSFGLKNVG-----ATYQRAMVALF*DMMHKEIEVYMDD 341

Query: 1232 IVVKSPSRDGHLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKA 1291
            ++VKS + + HL++LRK F R+RKY L++NP KC F V +   L F+   +GIE++ NK 
Sbjct: 342  MIVKSRTEEEHLVNLRKLFRRLRKYRLRLNPAKCMFEVKSRKLLDFIDS*RGIEVDSNKV 521

Query: 1292 KAILDTSPPTSKKQLQSLLGKINFLRRFITNLSEKTKSFSSLLRLKKEDVFRWEAEHQKA 1351
            K IL+ + P ++KQ+Q  LG++N++ RFI+ L    +     + L K    +W+ +   A
Sbjct: 522  KVILEMAKPHTEKQVQGFLGRLNYIVRFIS*LIATCEPL--FILLCKNQFVKWDHDC*VA 695

Query: 1352 FDELKKYLSNPPVMI 1366
            F+ +K+ L NP V++
Sbjct: 696  FERIKQCLINPHVLV 740


>NP595172 polyprotein [Glycine max]
          Length = 4659

 Score =  197 bits (500), Expect = 5e-50
 Identities = 142/428 (33%), Positives = 214/428 (49%)
 Frame = +1

Query: 1009 DGLEKRPTYISALIDPELKDRMVKLLKEFKDCFAWDYDEMPGLNRELVELKLPIKEDKKP 1068
            D L+  PT I    DPEL      LL  +   FA      P   ++     +P+K+   P
Sbjct: 1645 DTLKDLPTNI----DPEL----AILLHTYAQVFAVPASLPPQREQDHA---IPLKQGSGP 1791

Query: 1069 VKQLPRRFHPDVLVKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDL 1128
            VK  P R+      +I++ I+ +L    I+ +     L  ++ V KK+G  R C D+R L
Sbjct: 1792 VKVRPYRYPHTQKDQIEKMIQEMLVQGIIQPSNSPFSLP-ILLVKKKDGSWRFCTDYRAL 1968

Query: 1129 NAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIA*EDVSKTAFRCPGALGTY 1188
            NA T KD + MP  + ++D   G +Y S LD  SGY+QI +  ED  KTAFR     G Y
Sbjct: 1969 NAITVKDSFPMPTVDELLDELHGAQYFSKLDLRSGYHQILVQPEDREKTAFRTHH--GHY 2142

Query: 1189 EWVVMPFGLKNAGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDGHLLHLRK 1248
            EW+VMPFGL NA      AT+Q +MN IF   +  F+ V+ DDI++ S S   HL HL  
Sbjct: 2143 EWLVMPFGLTNAP-----ATFQCLMNKIFQFALRKFVLVFFDDILIYSASWKDHLKHLES 2307

Query: 1249 SFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQS 1308
              + ++++ L     KC+FG    D+LG  V   G+ +   K +A+LD   P + KQL+ 
Sbjct: 2308 VLQTLKQHQLFARLSKCSFGDTEVDYLGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLRG 2487

Query: 1309 LLGKINFLRRFITNLSEKTKSFSSLLRLKKEDVFRWEAEHQKAFDELKKYLSNPPVMIPP 1368
             LG   + RRFI + +      + LL   ++D F W  E + AF +LKK ++  PV+  P
Sbjct: 2488 FLGLTGYYRRFIKSYANIAGPLTDLL---QKDSFLWNNEAEAAFVKLKKAMTEAPVLSLP 2658

Query: 1369 IKGRPMKLYISATDETIGSMLAQEDEDGNERAIFYLSRVLNGAETRYTMIEKLCLCLYFS 1428
               +P  L   A+   +G++L Q     N   I Y S+ L     + +   +  L +  +
Sbjct: 2659 DFSQPFILETDASGIGVGAVLGQ-----NGHPIAYFSKKLAPRMQKQSAYTRELLAITEA 2823

Query: 1429 CVKLKYYI 1436
              K ++Y+
Sbjct: 2824 LSKFRHYL 2847



 Score =  107 bits (267), Expect = 5e-23
 Identities = 97/341 (28%), Positives = 150/341 (43%), Gaps = 9/341 (2%)
 Frame = +1

Query: 1730 HDGLCGAHQAGAKMKWILFRQGLYWPTIMKDCIEYARGCQDCQKHSGIQHVPASELHSII 1789
            H    G H AG        +   YWP + +D   Y + C  CQ+      +PA  L  + 
Sbjct: 3235 HSSPIGGH-AGITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPL- 3408

Query: 1790 KPWPFRGW---AIDLIGEIHPASSKQHKYIIVAVDYFTKWVEAIPLQ-NVTQETVIEFIQ 1845
             P P + W   A+D I  +   +S     I+V +D  TK+   IPL+ +   + V E   
Sbjct: 3409 -PIPQQVWEDVAMDFITGL--PNSFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFM 3579

Query: 1846 NHIVYRFGLPESITTDQGTVFVGRKVAAFAESWGIKLLTSTPYYAQANGQVEAANKILIS 1905
            +HIV   G+P SI +D+  VF         +  G  L  S+ Y+ Q++GQ E  NK L  
Sbjct: 3580 SHIVKLHGIPRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEM 3759

Query: 1906 LIKKHVGRKPKRWHESLSQVLWAYRNSPTEATGTTPFRLAYGQEAVLPAEVYLQSCRIQR 1965
             ++      PK W ++L    + Y  +   + G TPFR  YG+E   P  +  Q+C I  
Sbjct: 3760 YLRCFTYEHPKGWVKALPWAEFWYNTAYHMSLGMTPFRALYGRE---PPTLTRQACSIDD 3930

Query: 1966 QEEIPSEVYWNMMLDEMVNLDEERLLA-LDV-LTRQKDRIAKAYNKKVRDRSFITGDYVW 2023
              E+  ++            D + LLA L + LTR +  + +  +KK  D SF  GD V 
Sbjct: 3931 PAEVREQL-----------TDRDALLAKLKINLTRAQQVMKRQADKKRLDVSFQIGDEVL 4077

Query: 2024 KVILPMDKKDRVY---GKWTPNWEGPFTVEKTLPNNAYVIK 2061
              + P  +   V     K +  + GPF V   + + AY ++
Sbjct: 4078 VKLQPYRQHSAVLRKNQKLSMRYFGPFKVLAKIGDVAYKLE 4200


>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
          Length = 843

 Score =  156 bits (394), Expect = 1e-37
 Identities = 79/223 (35%), Positives = 117/223 (52%)
 Frame = +1

Query: 1677 EYLQNPVGSTDRKVKYRALSYTILGNELFKKNINGTLLKCLSENDAFMAVSAAHDGLCGA 1736
            EYL     +  R ++  A  + + G+ L+K+N +   L+C+   +A   +   H+G  G 
Sbjct: 175  EYLPEIADNDKRTLRRLAAGFFMSGSILYKRNHDMKPLRCVDAREANHMIEEVHEGSFGT 354

Query: 1737 HQAGAKMKWILFRQGLYWPTIMKDCIEYARGCQDCQKHSGIQHVPASELHSIIKPWPFRG 1796
            H  G  M   + R G YW T+  DC  + R C  CQ  +   + P   L+ +  PWPF  
Sbjct: 355  HANGHAMARKILRAGYYWLTMESDCCVHVRKCHKCQAFADNVNAPPHPLNVMSSPWPFSM 534

Query: 1797 WAIDLIGEIHPASSKQHKYIIVAVDYFTKWVEAIPLQNVTQETVIEFIQNHIVYRFGLPE 1856
            W ID+IG I P +S  H++I+VA+DYFTKWVEA    +V +  V+ FI+  I+ R+GLP 
Sbjct: 535  WGIDVIGAIEPKASNGHRFILVAIDYFTKWVEAASYTDVMRGVVVRFIKKEIICRYGLPR 714

Query: 1857 SITTDQGTVFVGRKVAAFAESWGIKLLTSTPYYAQANGQVEAA 1899
             I TD GT    + +    E + I+    TPY  + N  VE A
Sbjct: 715  KIITDNGTNLNNKMMGEICEEFKIQHHNPTPYRPKMN*AVEVA 843


>NP395547 reverse transcriptase [Glycine max]
          Length = 762

 Score =  151 bits (381), Expect = 3e-36
 Identities = 94/260 (36%), Positives = 131/260 (50%), Gaps = 18/260 (6%)
 Frame = +1

Query: 1084 IKEEIERLLKCKFIRTARYVDWLANVVPVIKKNG------------------KMRVCIDF 1125
            +++E+ +LL+   I       W++ V  V KK G                  + R+CID+
Sbjct: 1    VRKEVFKLLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDY 180

Query: 1126 RDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIA*EDVSKTAFRCPGAL 1185
            R LN AT KD Y +P  + M+   A   +   LDGYSGYNQI +  +D  KTAF CP ++
Sbjct: 181  RKLNEATRKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSV 360

Query: 1186 GTYEWVVMPFGLKNAGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDGHLLH 1245
              Y    MPFGL NA       T+QR M  IF D +E  ++V++DD      S    L +
Sbjct: 361  FAYRR--MPFGLCNAS-----TTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLAN 519

Query: 1246 LRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQ 1305
            L K  +R  K  L +N  KC F V  G  LG  + K+GIE+ K K   I    PP + K 
Sbjct: 520  LEKVLQRCEKSNLVLNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKG 699

Query: 1306 LQSLLGKINFLRRFITNLSE 1325
            + S LG + F RRFI + ++
Sbjct: 700  IHSFLGHVGFYRRFIKDFTK 759


>NP395548 reverse transcriptase [Glycine max]
          Length = 762

 Score =  143 bits (361), Expect = 7e-34
 Identities = 88/260 (33%), Positives = 133/260 (50%), Gaps = 18/260 (6%)
 Frame = +1

Query: 1084 IKEEIERLLKCKFIRTARYVDWLANVVPVIKKNG------------------KMRVCIDF 1125
            +++E+ +LL+   I       W++ V+ V KK G                    ++CID+
Sbjct: 1    VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDY 180

Query: 1126 RDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIA*EDVSKTAFRCPGAL 1185
            R LN AT KD + +P  + M++  AGH Y   LD Y GYNQI +  +D  K AF CP   
Sbjct: 181  RKLNEATRKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCP--F 354

Query: 1186 GTYEWVVMPFGLKNAGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDGHLLH 1245
            G + +  +PFGL NA       T+Q  M  IF D +E  ++V++DD  V  PS +  L  
Sbjct: 355  GVFAYRRIPFGLCNAP-----TTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKK 519

Query: 1246 LRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQ 1305
            L    +R  +  L +N  KC F V  G  LG  +  +GIE+++ K   I    PP++ K 
Sbjct: 520  LEMVLQRCVETNLVLNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKG 699

Query: 1306 LQSLLGKINFLRRFITNLSE 1325
            ++S LG+  F RRFI + ++
Sbjct: 700  IRSFLGQARFYRRFIKDFTK 759


>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
          Length = 402

 Score =  136 bits (343), Expect = 8e-32
 Identities = 71/139 (51%), Positives = 94/139 (67%)
 Frame = +2

Query: 1156 SLLDGYSGYNQIFIA*EDVSKTAFRCPGALGTYEWVVMPFGLKNAGLKNAGATYQRVMNT 1215
            S +DG+SGYNQI +A EDV KT F      GT+ + VM FGLKN G     ATYQR M  
Sbjct: 5    SFMDGFSGYNQI*MAREDVEKTTFVT--LWGTFSYRVMAFGLKNTG-----ATYQRAMVA 163

Query: 1216 IFHDFIETFMQVYIDDIVVKSPSRDGHLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFL 1275
            +FHD +   ++VY+DD++ KS +   HL++L K F R++KY LK+NP KC FGV +G  L
Sbjct: 164  LFHDMMHKEIEVYVDDMIAKSRTETEHLVNLCKLFGRLQKYQLKLNPTKCTFGVKSGKLL 343

Query: 1276 GFVVHKKGIEINKNKAKAI 1294
            GF+V +KGIEI+  K KA+
Sbjct: 344  GFIVSQKGIEIDPEKVKAL 400


>NP334778 reverse transcriptase [Glycine max]
          Length = 431

 Score =  129 bits (323), Expect = 2e-29
 Identities = 63/150 (42%), Positives = 97/150 (64%)
 Frame = +3

Query: 1120 RVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIA*EDVSKTAF 1179
            R+C+D+RDLN A+PKD + +P  ++++ + A     S +DG+SGYNQI +A ED+ KT F
Sbjct: 3    RMCVDYRDLNRASPKDNFPLPHIDILMANMASFALFSFMDGFSGYNQIKMAPEDMEKTTF 182

Query: 1180 RCPGALGTYEWVVMPFGLKNAGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSR 1239
                  GT+ + VM FGLKN G     ATY R M  +F D +   ++ Y+D+++ KS   
Sbjct: 183  IT--LWGTFCYKVMSFGLKNFG-----ATYHRAMVALFQDMMHKEIEAYVDEMIAKSRME 341

Query: 1240 DGHLLHLRKSFERMRKYGLKMNPLKCAFGV 1269
            + HL++L+  F ++RKY L++NP KC FG+
Sbjct: 342  EEHLVNLQNLFGQLRKYRLRLNPRKCVFGL 431


>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
          Length = 669

 Score =  105 bits (261), Expect = 3e-22
 Identities = 66/184 (35%), Positives = 94/184 (50%)
 Frame = +1

Query: 1897 EAANKILISLIKKHVGRKPKRWHESLSQVLWAYRNSPTEATGTTPFRLAYGQEAVLPAEV 1956
            EAANK +  +I+K +    K WHE L   L  YR S   +TG TPF L YG EAVLP EV
Sbjct: 1    EAANKNIKKIIQK-MTVSYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPFEV 177

Query: 1957 YLQSCRIQRQEEIPSEVYWNMMLDEMVNLDEERLLALDVLTRQKDRIAKAYNKKVRDRSF 2016
             + S RI  +  +    +     D++  ++ +RL A+      + R+  A++KKV  R F
Sbjct: 178  EVPSLRILAESGLKESEWAQTRYDQLNLIEGKRLTAMSHGRLYQQRMKSAFDKKVCLRKF 357

Query: 2017 ITGDYVWKVILPMDKKDRVYGKWTPNWEGPFTVEKTLPNNAYVIKELGNQRQCVTINGKY 2076
              GD V K +    K  R  GKW PN+EGPF V++     A V+  +  +     +N   
Sbjct: 358  HEGDLVLKKMSHAVKDHR--GKWAPNYEGPFVVKRAFSGGALVLTNMDGEELPSPMNSDV 531

Query: 2077 LKAY 2080
            +K Y
Sbjct: 532  VKRY 543


>TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotein (Fragment),
            partial (8%)
          Length = 1320

 Score =  102 bits (255), Expect = 1e-21
 Identities = 55/156 (35%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
 Frame = +3

Query: 958  EQSVDECEFEDLRNLRLDCIYDDGPLGFEKPVVDVSKKMEA-QDPLEEVDLGDGLEKRPT 1016
            EQ +++ E E   ++ L       P   E+ V    ++M   Q+  E VDLG G  KR  
Sbjct: 870  EQKMNQTEDEGNEDVGL-------PPELERMVAHEDQEMGPHQEETELVDLGSGSGKREV 1028

Query: 1017 YISALIDPELKDRMVKLLKEFKDCFAWDYDEMPGLNRELVELKLPIKEDKKPVKQLPRRF 1076
             I   I   +++ ++ LL++++D FAW Y +MPGL+ ++V+ +LP+  +  PVKQ  RR 
Sbjct: 1029 KIGTGITAPIREELIILLRDYQDIFAWSYQDMPGLSSDIVQHRLPLNPECSPVKQKLRRM 1208

Query: 1077 HPDVLVKIKEEIERLLKCKFIRTARYVDWLANVVPV 1112
             P+  +KIKEE+++     F+  ARY  W+AN+VP+
Sbjct: 1209 KPETSLKIKEEVKK*FDAGFLAVARYPKWVANIVPI 1316


>BI316922 
          Length = 405

 Score =  101 bits (252), Expect = 3e-21
 Identities = 48/132 (36%), Positives = 75/132 (56%)
 Frame = +3

Query: 1730 HDGLCGAHQAGAKMKWILFRQGLYWPTIMKDCIEYARGCQDCQKHSGIQHVPASELHSII 1789
            H G+CG H     M   + R G Y  T+ K C EY + C++C K   I H+   ELH+I+
Sbjct: 9    HRGICGMHSKSQLMTTRVLRVGYY**TMRKYCTEYVKKCEEC*KFGNISHLLVEELHNIV 188

Query: 1790 KPWPFRGWAIDLIGEIHPASSKQHKYIIVAVDYFTKWVEAIPLQNVTQETVIEFIQNHIV 1849
             PWPF    +D++    P S +Q KY++V +D FTKW+E   +  ++   V +F+  +IV
Sbjct: 189  APWPFAI*GVDILRPF-PLSKRQVKYLLVGIDQFTKWIETEHIAIISIANVRKFV*RNIV 365

Query: 1850 YRFGLPESITTD 1861
              FG+P ++ +D
Sbjct: 366  C*FGIPNTLISD 401


>AW184779 
          Length = 432

 Score = 59.7 bits (143), Expect(2) = 1e-16
 Identities = 25/45 (55%), Positives = 33/45 (72%)
 Frame = +3

Query: 1797 WAIDLIGEIHPASSKQHKYIIVAVDYFTKWVEAIPLQNVTQETVI 1841
            W ID+IG I P +S  H +I+VA+DYFTKWVEA+   +VT+  VI
Sbjct: 294  WGIDVIGAIEPKASNGHHFILVAIDYFTKWVEAVSYASVTRSVVI 428



 Score = 47.4 bits (111), Expect(2) = 1e-16
 Identities = 23/71 (32%), Positives = 34/71 (47%)
 Frame = +1

Query: 1702 NELFKKNINGTLLKCLSENDAFMAVSAAHDGLCGAHQAGAKMKWILFRQGLYWPTIMKDC 1761
            N L+K+N +  LL+C+   +A   +   H+G  G H     M   + R G YW T+  DC
Sbjct: 10   NILYKRNHDMVLLRCVDAREAEQMLVEVHEGSFGTHANIHAMAQKILRVGYYWLTMESDC 189

Query: 1762 IEYARGCQDCQ 1772
              +   C  CQ
Sbjct: 190  CIHVWKCHKCQ 222


>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
          Length = 803

 Score = 65.5 bits (158), Expect(2) = 1e-16
 Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 6/191 (3%)
 Frame = +2

Query: 1570 KNVVIKGDSELVVKQLTKEYKCVSEHLAKYYVKANNLLAKFNEIGIGHVPRIENQEANEL 1629
            K + + GDS LV+ QL  E +    +L  Y      L   F+EI   HV   ENQ A+ L
Sbjct: 233  KLLKVYGDSALVIHQLRGECETRDPNLIPYQAYIKELAGFFDEISFHHVA*EENQMADAL 412

Query: 1630 AQIASGYMVDKLKLTELIKIKEKLSPSDLDIMCIDNLTSNDWRKPIVEYLQN---PVGST 1686
            A + S + +        I+ + +  P+   ++  +      W   I  Y+++   P+ ++
Sbjct: 413  ATLVSMFQLTPHGDLPYIEFRCRGRPAHCCLV-EEERDGKPWYFDIKRYVESKEYPLEAS 589

Query: 1687 D---RKVKYRALSYTILGNELFKKNINGTLLKCLSENDAFMAVSAAHDGLCGAHQAGAKM 1743
            D   R+ +  A  + + G+ L+K+N +  LL C++  +    +   H+G  G H  G  M
Sbjct: 590  DNDKRRKRRLAAGFFMSGSILYKRNHDMVLLHCVNGKEVENMLGEVHEGSFGTHSNGHAM 769

Query: 1744 KWILFRQGLYW 1754
               + R G YW
Sbjct: 770  ARKILRAGYYW 802



 Score = 41.2 bits (95), Expect(2) = 1e-16
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = +1

Query: 1510 WKLYFDGSSHKNGTGIGMFIMSPQGAPTKFKFRIEGNCSNNEVEYEA 1556
            W ++FD +S+  G G+G  ++SP      F  R+  +C+NN  EYEA
Sbjct: 52   WIVWFDRASNVLGHGVGAILVSPDNQCIPFTTRLGFDCTNNMAEYEA 192


>BI321666 
          Length = 430

 Score = 77.8 bits (190), Expect = 5e-14
 Identities = 41/122 (33%), Positives = 64/122 (51%)
 Frame = +2

Query: 1753 YWPTIMKDCIEYARGCQDCQKHSGIQHVPASELHSIIKPWPFRGWAIDLIGEIHPASSKQ 1812
            Y P+I KD   +A+ C  CQ+   +       LH+I++   F  W ID +G   P+ S +
Sbjct: 32   YLPSIFKDAYVHAQSCNKCQRTRSVSKRNELPLHTILEVEIFDYWGIDFVGPFPPSFSNE 211

Query: 1813 HKYIIVAVDYFTKWVEAIPLQNVTQETVIEFIQNHIVYRFGLPESITTDQGTVFVGRKVA 1872
              YI+V VDY +KWVEA+  Q    + VI+F++  I  R G+P  +  + G+      +A
Sbjct: 212  --YILVVVDYVSKWVEAVACQKSDAKIVIKFLKKQIFSRLGVPWVLIDNGGSHLCNA*LA 385

Query: 1873 AF 1874
             F
Sbjct: 386  RF 391


>BQ628592 
          Length = 423

 Score = 72.4 bits (176), Expect = 2e-12
 Identities = 31/72 (43%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
 Frame = -1

Query: 1336 LKKEDVFRWEAEHQKAFDELKKYLSNPPVMIPPIKGRPMKLYISATDETIGSMLAQEDED 1395
            L K     W + +Q+AF+++K+ L+NP V++PP+ GRP  LY++  DE++G +L Q D+ 
Sbjct: 423  LPKNQAILWNSNYQEAFEKIKQSLANPSVLMPPVTGRPFLLYMTMLDESMGCVLVQHDDS 244

Query: 1396 G-NERAIFYLSR 1406
            G  E+AI+YLS+
Sbjct: 243  GKKEQAIYYLSK 208


>BE802896 
          Length = 416

 Score = 66.2 bits (160), Expect = 1e-10
 Identities = 46/137 (33%), Positives = 71/137 (51%)
 Frame = -2

Query: 1308 SLLGKINFLRRFITNLSEKTKSFSSLLRLKKEDVFRWEAEHQKAFDELKKYLSNPPVMIP 1367
            S LG   F RRFI +  +     S+LL+  KE  F +  + + AFD LK+ L   P++  
Sbjct: 415  SFLGHAGFYRRFIRDFRKVALPLSNLLQ--KEVEFDFNDKCK*AFDCLKRALITTPIIQA 242

Query: 1368 PIKGRPMKLYISATDETIGSMLAQEDEDGNERAIFYLSRVLNGAETRYTMIEKLCLCLYF 1427
            P    P +L   A++  +G +LAQ+  D   R I+Y SR L+ A+  YT  EK  L + F
Sbjct: 241  PDWTAPFELMCDASNYALGVVLAQK-IDKLPRVIYYSSRTLDAAQANYTTTEKELLAIVF 65

Query: 1428 SCVKLKYYIKPIDVMVF 1444
            +  K   Y+    ++V+
Sbjct: 64   ALEKFHSYLLGTRIIVY 14


>TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)
          Length = 589

 Score = 56.2 bits (134), Expect(2) = 2e-10
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 2/169 (1%)
 Frame = +1

Query: 1300 PTSKK--QLQSLLGKINFLRRFITNLSEKTKSFSSLLRLKKEDVFRWEAEHQKAFDELKK 1357
            PT K    ++S  G  +F RRF+ N S      + L+  KK   F W  + ++AF  LK+
Sbjct: 97   PTLKSVGDIRSFHGLASFYRRFVPNFSTVASPLNELV--KKNMAFTWGEKQEQAFALLKE 270

Query: 1358 YLSNPPVMIPPIKGRPMKLYISATDETIGSMLAQEDEDGNERAIFYLSRVLNGAETRYTM 1417
             L+  PV+  P   +  +L   A+   + ++L Q         I Y S  L+ A   Y  
Sbjct: 271  KLTKAPVLALPDFSKTFELECDASGVGVRAVLLQ-----GGHPIAYFSEKLHSATLNYPT 435

Query: 1418 IEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKW 1466
             +K    L  +    ++++   + ++ S +  +K++  K  L+ R  KW
Sbjct: 436  YDKELYALIRAPQTWEHFLVCKEFVIHSDHQSLKYIRGKSKLNKRHAKW 582



 Score = 29.3 bits (64), Expect(2) = 2e-10
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 1274 FLGFVVHKKGIEINKNKAKAILDTSPP 1300
            F GFVV + G++++  K KAI +  PP
Sbjct: 23   FSGFVVGRNGVQMDPEKIKAIQEWPPP 103


>BG839293 
          Length = 781

 Score = 65.5 bits (158), Expect = 2e-10
 Identities = 30/73 (41%), Positives = 47/73 (64%)
 Frame = +1

Query: 999  QDPLEEVDLGDGLEKRPTYISALIDPELKDRMVKLLKEFKDCFAWDYDEMPGLNRELVEL 1058
            Q+  E VDLG G  KR   I   I   +++ ++ LLK+++D FAW Y +MPGL+ ++V+ 
Sbjct: 511  QEETELVDLGIGSGKREVKIGTGITAPIREELIILLKDYQDIFAWSYQDMPGLSSDIVQH 690

Query: 1059 KLPIKEDKKPVKQ 1071
            +LP+  +  PVKQ
Sbjct: 691  QLPLNPECSPVKQ 729


>BE660092 weakly similar to GP|9884624|dbj retroelement pol polyprotein-like
            {Arabidopsis thaliana}, partial (13%)
          Length = 378

 Score = 62.0 bits (149), Expect = 3e-09
 Identities = 28/84 (33%), Positives = 46/84 (54%)
 Frame = -3

Query: 1873 AFAESWGIKLLTSTPYYAQANGQVEAANKILISLIKKHVGRKPKRWHESLSQVLWAYRNS 1932
            A  + +G+    STPY+ Q NGQ E +N+ +  +++K V    K W   L   LWA+R +
Sbjct: 370  ALLKKYGVVHRVSTPYHPQTNGQAEISNREIKRILEKIVQPSRKDWSTRLDDALWAHRTA 191

Query: 1933 PTEATGTTPFRLAYGQEAVLPAEV 1956
                 G +P+R+ +G+   LP E+
Sbjct: 190  YKAPIGMSPYRVVFGKACHLPVEI 119


>BG725601 similar to PIR|H86337|H86 protein F5M15.26 [imported] - Arabidopsis
            thaliana, partial (1%)
          Length = 285

 Score = 61.6 bits (148), Expect = 3e-09
 Identities = 36/89 (40%), Positives = 47/89 (52%)
 Frame = -3

Query: 1059 KLPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGK 1118
            KL I  D K V Q  R+   +    + +E+ +L    FIR   Y   L +VV V K NGK
Sbjct: 274  KLAICNDVKLVTQRKRKIREERCQTV*QEVVKLAIASFIRDINYST*LFSVVMVKKPNGK 95

Query: 1119 MRVCIDFRDLNAATPKDEYHMPIAEMMVD 1147
             R+C D+ DLN A PKD Y +P  + M D
Sbjct: 94   WRICTDYIDLN*ACPKDAYPLPNIDHMTD 8


>BI317507 
          Length = 359

 Score = 58.5 bits (140), Expect = 3e-08
 Identities = 32/114 (28%), Positives = 58/114 (50%)
 Frame = -1

Query: 1231 DIVVKSPSRDGHLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNK 1290
            +I++ SP    H++HL    + ++K  L  N  KC F     ++LG V+ K  + ++ NK
Sbjct: 353  NILIYSPDWKSHIMHLTAVLDVLKKERLVANRKKCYFSQTTIEYLGHVISKDCVAMDSNK 174

Query: 1291 AKAILDTSPPTSKKQLQSLLGKINFLRRFITNLSEKTKSFSSLLRLKKEDVFRW 1344
             K++++   P + K++ S L    + R+FI +  +       L  L K D F+W
Sbjct: 173  VKSVIEWPVPKNVKRVCSFLRLTGYYRKFIKDYGKLAP--RPLTDLTKNDGFKW 18


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.333    0.143    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,188,445
Number of Sequences: 63676
Number of extensions: 1300932
Number of successful extensions: 9781
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 9500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9759
length of query: 2087
length of database: 12,639,632
effective HSP length: 112
effective length of query: 1975
effective length of database: 5,507,920
effective search space: 10878142000
effective search space used: 10878142000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 66 (30.0 bits)