BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0545.2
(653 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 49 5e-06
TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g4... 47 3e-05
TC231523 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {A... 43 5e-04
TC204285 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 42 9e-04
TC210126 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C2... 42 0.001
TC207237 weakly similar to UP|EWS_HUMAN (Q01844) RNA-binding pro... 40 0.003
TC227815 similar to UP|RIR2_TOBAC (P49730) Ribonucleoside-diphos... 40 0.004
TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Pro... 39 0.007
TC228275 weakly similar to UP|Q9M3D0 (Q9M3D0) Lipase-like protei... 39 0.010
TC211437 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%) 38 0.012
TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 37 0.028
TC204966 similar to UP|HMD1_ARATH (P14891) 3-hydroxy-3-methylglu... 37 0.028
TC226370 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich pr... 37 0.036
TC216648 weakly similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, pa... 37 0.036
TC229926 similar to UP|Q93VB2 (Q93VB2) AT3g62770/F26K9_200, part... 36 0.047
TC219641 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 36 0.062
AW185139 similar to GP|4107037|dbj| HMG-CoA reductase {Cucumis m... 35 0.081
TC222379 homologue to UP|Q9HGV7 (Q9HGV7) Gbeta like protein, par... 35 0.081
TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 35 0.11
TC213991 similar to UP|Q6H976 (Q6H976) STYLOSA protein, partial ... 35 0.11
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 49.3 bits (116), Expect = 5e-06
Identities = 39/148 (26%), Positives = 67/148 (44%), Gaps = 6/148 (4%)
Frame = -3
Query: 182 ATPTTSASQKRAKGA---GGSTVGNPSPAKSASQREEMQQGGDQGVDQQASSPLQDTT-- 236
++P +S+S+ GG++ + S + ++S G + +D +SS +
Sbjct: 762 SSPPSSSSESSLSDLFLFGGASAFSQSSSSTSSSSSSPFSSGSKSLDASSSSAVSKGRIR 583
Query: 237 -SIPVEMAQAKKTSGKRSSRKSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWF 295
S+P + +S SS S S SS S SS+S SP + + P S + +
Sbjct: 582 YSVPKSSSSPCSSSSSSSSSSSSSESSSESLSSSSGSPPRWTSPSSSSSSSSSSSPPSGA 403
Query: 296 SSKPPPIALSSSSSDLESSSSSLDSTES 323
SS ++ SSSS SSSSS ++ +
Sbjct: 402 SSSSSSLSSPSSSSSSSSSSSSSSASST 319
Score = 44.7 bits (104), Expect = 1e-04
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 1/144 (0%)
Frame = -3
Query: 181 GATPTTSASQKRAKGAGGSTVGNPSPAKSASQREEMQQGGDQ-GVDQQASSPLQDTTSIP 239
G S S + S + S + AS + +G + V + +SSP ++S
Sbjct: 708 GGASAFSQSSSSTSSSSSSPFSSGSKSLDASSSSAVSKGRIRYSVPKSSSSPCSSSSSSS 529
Query: 240 VEMAQAKKTSGKRSSRKSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFSSKP 299
+ ++ +S SS SGS S SS+SSS +S P S ++ S P
Sbjct: 528 SSSSSSESSSESLSS-SSGSPPRWTSPSSSSSSSSSSSPPSGASSSSSSL-------SSP 373
Query: 300 PPIALSSSSSDLESSSSSLDSTES 323
+ SSSSS S+SS+ ST+S
Sbjct: 372 SSSSSSSSSSSSSSASSTTSSTDS 301
Score = 35.8 bits (81), Expect = 0.062
Identities = 28/76 (36%), Positives = 38/76 (49%), Gaps = 2/76 (2%)
Frame = -3
Query: 252 RSSRKSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFSSKP--PPIALSSSSS 309
+SS + SSSS S + S +S G + +VP++ SS P + SSSSS
Sbjct: 687 QSSSSTSSSSSSPFSSGSKSLDASSSSAVSKGRIRYSVPKS---SSSPCSSSSSSSSSSS 517
Query: 310 DLESSSSSLDSTESDP 325
ESSS SL S+ P
Sbjct: 516 SSESSSESLSSSSGSP 469
>TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g47970
{Arabidopsis thaliana;} , partial (39%)
Length = 867
Score = 47.0 bits (110), Expect = 3e-05
Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 3/145 (2%)
Frame = -2
Query: 182 ATPTTSASQKRAKGA---GGSTVGNPSPAKSASQREEMQQGGDQGVDQQASSPLQDTTSI 238
++P +S+S+ GG++ +PS + ++S G + +D +SS + T
Sbjct: 602 SSPPSSSSESSLSDLFLFGGASDFSPSSSSTSSSSSSPFSSGSKSLDASSSSAV---TRG 432
Query: 239 PVEMAQAKKTSGKRSSRKSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFSSK 298
+ + K S SS S SSSS S S+SS S P+ +S + SS
Sbjct: 431 RIRYSVPKSASSPCSSSSSSSSSSSSSSLSSSSG----SPPRWTSLSSSSSSS----SSS 276
Query: 299 PPPIALSSSSSDLESSSSSLDSTES 323
PP SSSSS SSSSSL S+ S
Sbjct: 275 SPPSGASSSSS---SSSSSLSSSSS 210
Score = 39.3 bits (90), Expect = 0.006
Identities = 31/79 (39%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = -2
Query: 257 SGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFSSKPP----PIALSSSSSDLE 312
S S S S SS+SSSP + S AV R S P P + SSSSS
Sbjct: 539 SDFSPSSSSTSSSSSSPFSSGSKSLDASSSSAVTRGRIRYSVPKSASSPCSSSSSSSSSS 360
Query: 313 SSSSSLDSTESDPVWDKLT 331
SSSS S+ S P W L+
Sbjct: 359 SSSSLSSSSGSPPRWTSLS 303
Score = 25.8 bits (55), Expect(2) = 5.0
Identities = 18/53 (33%), Positives = 25/53 (46%), Gaps = 3/53 (5%)
Frame = -2
Query: 228 ASSPLQDTTSIP---VEMAQAKKTSGKRSSRKSGSSSSHHSKSSTSSSPLKAS 277
+SS L ++ P ++ + +S S SSSS S SS SSS K S
Sbjct: 359 SSSSLSSSSGSPPRWTSLSSSSSSSSSSSPPSGASSSSSSSSSSLSSSSSKDS 201
Score = 21.9 bits (45), Expect(2) = 5.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 296 SSKPPPIALSSSSSDLESSSSSLDST 321
SS P + +SSS SSSSS T
Sbjct: 192 SSSSSPSSTTSSSDSYSSSSSSSTKT 115
>TC231523 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {Arabidopsis
thaliana;} , partial (32%)
Length = 878
Score = 42.7 bits (99), Expect = 5e-04
Identities = 39/138 (28%), Positives = 56/138 (40%)
Frame = +2
Query: 171 KLKIPKTRKRGATPTTSASQKRAKGAGGSTVGNPSPAKSASQREEMQQGGDQGVDQQASS 230
K + TR+R TP AS++RA S + S R + + SS
Sbjct: 11 KWRTISTRRRTLTP---ASRRRAPARSTSRTRR----RGTSSRTKTTRPSSCAATAARSS 169
Query: 231 PLQDTTSIPVEMAQAKKTSGKRSSRKSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVP 290
P TTS P A + R S S++ S S+ SSP A+ P+R S + P
Sbjct: 170 PAPTTTSSPTSAA---------TPRSSPSTAPSSSPPSSPSSPPSATPPRRTSPSSTSSP 322
Query: 291 RATWFSSKPPPIALSSSS 308
T S P P +S++
Sbjct: 323 VRTSTPSSPSPTTTTSNT 376
>TC204285 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (32%)
Length = 1539
Score = 42.0 bits (97), Expect = 9e-04
Identities = 38/145 (26%), Positives = 69/145 (47%)
Frame = +3
Query: 177 TRKRGATPTTSASQKRAKGAGGSTVGNPSPAKSASQREEMQQGGDQGVDQQASSPLQDTT 236
T + ++S+S K KGA +T G S + +Q+ +++P TT
Sbjct: 594 TSTKTTKESSSSSTKTTKGATNTTKGASSNTAKEAMSTNLQE-------TTSTNP*VATT 752
Query: 237 SIPVEMAQAKKTSGKRSSRKSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFS 296
S + +A TS + SSSS+ +++++SS ++ S + AT S
Sbjct: 753 SSSSNLQEATSTSSSTP*VATTSSSSNLQEATSTSS---STP*VSTTSSSSNLQEATSTS 923
Query: 297 SKPPPIALSSSSSDLESSSSSLDST 321
S P ++ +SSSS+L+ ++S+ ST
Sbjct: 924 SSTP*VSTTSSSSNLQEATSTSSST 998
>TC210126 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23), partial
(7%)
Length = 735
Score = 41.6 bits (96), Expect = 0.001
Identities = 28/67 (41%), Positives = 35/67 (51%)
Frame = -3
Query: 259 SSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFSSKPPPIALSSSSSDLESSSSSL 318
SSSS S SS+SSSP +S + S SS PPP+A SSS SS SS
Sbjct: 571 SSSSSSSSSSSSSSPSSSSSSLSLSSSS---------SSLPPPLASGSSSGSPSSSPSSP 419
Query: 319 DSTESDP 325
+++ S P
Sbjct: 418 ENSSSSP 398
Score = 30.8 bits (68), Expect = 2.0
Identities = 32/83 (38%), Positives = 36/83 (42%), Gaps = 9/83 (10%)
Frame = -3
Query: 253 SSRKSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFSSKPPPIALSS------ 306
SS S SSSS S S+SSS L S S + P A+ SS P + SS
Sbjct: 571 SSSSSSSSSSSSSSPSSSSSSLSLSSSS----SSLPPPLASGSSSGSPSSSPSSPENSSS 404
Query: 307 ---SSSDLESSSSSLDSTESDPV 326
SS SSSSS S S V
Sbjct: 403 SPSSS*SCPSSSSSSPSLSSSSV 335
Score = 29.3 bits (64), Expect = 5.8
Identities = 29/82 (35%), Positives = 38/82 (45%), Gaps = 3/82 (3%)
Frame = -3
Query: 240 VEMAQAKKTSGKRSSRKSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFSSKP 299
V + + +S SS S SSSS SS+SS P + G S + P + SS
Sbjct: 577 VSSSSSSSSSSSSSSSPSSSSSSLSLSSSSSSLPPPLASGSSSG-SPSSSPSSPENSSSS 401
Query: 300 PPIA---LSSSSSDLESSSSSL 318
P + SSSSS SSSS+
Sbjct: 400 PSSS*SCPSSSSSSPSLSSSSV 335
>TC207237 weakly similar to UP|EWS_HUMAN (Q01844) RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein), partial (5%)
Length = 812
Score = 40.4 bits (93), Expect = 0.003
Identities = 45/149 (30%), Positives = 62/149 (41%), Gaps = 14/149 (9%)
Frame = +3
Query: 183 TPTTSASQKRAKGAGGSTVGNPSPAKSASQREEMQQGGDQGVDQQASSPLQDTTSIPVEM 242
TP++S+S +R+ S+ S S S + P TT++P
Sbjct: 288 TPSSSSSTRRSSTTSRSSASRSSATNSPS----------------SPPPSWPTTTLPTPT 419
Query: 243 AQAKKTSGKRS-SRKSGSSSSHHSKSSTSSSPLKAS---GPKRVGMS--------KMAVP 290
+ + TS RS S S SS+S S +S S P AS P S + P
Sbjct: 420 SSSSATSSSRSPSSPSPSSASTPSPTSASLGPTWASRTPSPWTRATSPASPTPWPSSSSP 599
Query: 291 RAT--WFSSKPPPIALSSSSSDLESSSSS 317
R T W S PP + ++SSS SSSSS
Sbjct: 600 RLTSPWAPSTAPPSSPATSSSS*PSSSSS 686
Score = 33.1 bits (74), Expect = 0.40
Identities = 25/87 (28%), Positives = 41/87 (46%)
Frame = +3
Query: 239 PVEMAQAKKTSGKRSSRKSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFSSK 298
P+ + + +S +RSS S SS+S S +++ SSP P + ++
Sbjct: 276 PLALTPSSSSSTRRSSTTSRSSASRSSATNSPSSP----------------PPSWPTTTL 407
Query: 299 PPPIALSSSSSDLESSSSSLDSTESDP 325
P P + SS++S S SS S+ S P
Sbjct: 408 PTPTSSSSATSSSRSPSSPSPSSASTP 488
>TC227815 similar to UP|RIR2_TOBAC (P49730) Ribonucleoside-diphosphate
reductase small chain (Ribonucleotide reductase) (R2
subunit) , complete
Length = 1407
Score = 39.7 bits (91), Expect = 0.004
Identities = 53/196 (27%), Positives = 76/196 (38%)
Frame = +2
Query: 128 ISIRTLIGQAEPIPRPTPQASPRVASATVEMEDDDDDDVALADKLKIPKTRKRGATPTTS 187
+S+ L Q P+ R+ASA + K + + R+R +P TS
Sbjct: 179 LSLLFLSSQCLQFPKSPSWLRTRIASACSQSNTRKSGKCTRKPKPRSGR-RRRWTSPRTS 355
Query: 188 ASQKRAKGAGGSTVGNPSPAKSASQREEMQQGGDQGVDQQASSPLQDTTSIPVEMAQAKK 247
A+ G PSP SA+ SSP +S P MA + +
Sbjct: 356 AT------------GTPSPTASAT-----------------SSPTSSPSS-PPPMASSSR 445
Query: 248 TSGKRSSRKSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFSSKPPPIALSSS 307
TS S R+S SS S+ S SP S+ + PR T SSKP +S
Sbjct: 446 TSPGASQRRS--SSPRPGPSTASRSP-----------SRTSTPRCTASSSKP------TS 568
Query: 308 SSDLESSSSSLDSTES 323
+ ++SS+ ST S
Sbjct: 569 RTPTRRTTSSVPSTPS 616
>TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23),
partial (8%)
Length = 581
Score = 38.9 bits (89), Expect = 0.007
Identities = 32/92 (34%), Positives = 43/92 (45%), Gaps = 2/92 (2%)
Frame = -3
Query: 248 TSGKRSSRKSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFSSKPP--PIALS 305
+S SS S SSSS S S +SSS +S + +A ++ +S PP P S
Sbjct: 525 SSSSSSSSSSSSSSSPSSSSLSSSSSSSSSSSSSLSPPPLASGSSSESASSPPSSPEKSS 346
Query: 306 SSSSDLESSSSSLDSTESDPVWDKLTFYFNSK 337
SSSS SS S S+ S L F+S+
Sbjct: 345 SSSSSSSPSSPSFTSSSSSSSSVSLASLFSSE 250
Score = 33.1 bits (74), Expect = 0.40
Identities = 29/79 (36%), Positives = 39/79 (48%), Gaps = 9/79 (11%)
Frame = -3
Query: 256 KSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFSS-KPPPIALSSS------- 307
+ G S S SS+SSS +S P +S + ++ SS PPP+A SS
Sbjct: 543 EGGCGVSSSSSSSSSSS--SSSSPSSSSLSSSSSSSSSSSSSLSPPPLASGSSSESASSP 370
Query: 308 -SSDLESSSSSLDSTESDP 325
SS +SSSSS S+ S P
Sbjct: 369 PSSPEKSSSSSSSSSPSSP 313
Score = 32.7 bits (73), Expect = 0.52
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Frame = -3
Query: 232 LQDTTSIPVEMAQAKKTSGKRSSRKSGSSSSHHSKSSTSSS----PLKASGPKRVGMSKM 287
L+ + + + +S S S SSS S SS+SSS PL + S
Sbjct: 546 LEGGCGVSSSSSSSSSSSSSSSPSSSSLSSSSSSSSSSSSSLSPPPLASGSSSESASSPP 367
Query: 288 AVP-RATWFSSKPPPIALSSSSSDLESSSSSLDSTESDPV 326
+ P +++ SS P + S +SS SSS SL S S V
Sbjct: 366 SSPEKSSSSSSSSSPSSPSFTSSSSSSSSVSLASLFSSEV 247
Score = 29.3 bits (64), Expect = 5.8
Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 7/111 (6%)
Frame = -3
Query: 197 GGSTVGNPSPAKSASQREEMQQGGDQGVDQQASSPLQDTTSIPV-------EMAQAKKTS 249
GG V + S + S+S +SS + S P E A + +S
Sbjct: 540 GGCGVSSSSSSSSSSSSSSSPSSSSLSSSSSSSSSSSSSLSPPPLASGSSSESASSPPSS 361
Query: 250 GKRSSRKSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFSSKPP 300
++SS S SSS ++SSS + + S++ P W P
Sbjct: 360 PEKSSSSSSSSSPSSPSFTSSSSSSSSVSLASLFSSEVCFPLHGWSKGNLP 208
>TC228275 weakly similar to UP|Q9M3D0 (Q9M3D0) Lipase-like protein, partial
(25%)
Length = 1153
Score = 38.5 bits (88), Expect = 0.010
Identities = 42/148 (28%), Positives = 60/148 (40%)
Frame = +3
Query: 181 GATPTTSASQKRAKGAGGSTVGNPSPAKSASQREEMQQGGDQGVDQQASSPLQDTTSIPV 240
GATP + A S P AKS+ + S+P +
Sbjct: 30 GATPRKKNTTPPKAFATPSPTSKPPTAKSSPSPSSLS----------TSNPTKSKPPSL* 179
Query: 241 EMAQAKKTSGKRSSRKSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFSSKPP 300
A A +G SSRKS S+S +T SSP +S +S + ATW S PP
Sbjct: 180 PTATAPTPAG--SSRKSASTSP---PGATPSSPPTSSATAAPTVS--SATSATWTKSPPP 338
Query: 301 PIALSSSSSDLESSSSSLDSTESDPVWD 328
P SS+S+ + +S S+ + P W+
Sbjct: 339 PSPSSSTSAIATPTKTSRHSSSASP-WE 419
>TC211437 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%)
Length = 857
Score = 38.1 bits (87), Expect = 0.012
Identities = 30/74 (40%), Positives = 37/74 (49%), Gaps = 1/74 (1%)
Frame = -1
Query: 253 SSRKSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFSSKP-PPIALSSSSSDL 311
SS S SSSS S SS+SSS +S S + P A+ S P P + +SSS
Sbjct: 605 SSSSSSSSSSSSSPSSSSSSSPLSSPSSSSSPSSLPSPLASSSGSPPSSPSSPENSSSSP 426
Query: 312 ESSSSSLDSTESDP 325
SSSS S+ S P
Sbjct: 425 SSSSSGPSSSSSSP 384
Score = 36.2 bits (82), Expect = 0.047
Identities = 33/84 (39%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Frame = -1
Query: 250 GKRSSRKSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFSSKPPPIALSS--- 306
G SS S SSSS SS+SSSPL + S ++P SS PP + SS
Sbjct: 611 GVSSSSSSSSSSSSSPSSSSSSSPLSSPSSSS---SPSSLPSPLASSSGSPPSSPSSPEN 441
Query: 307 -------SSSDLESSSSSLDSTES 323
SSS SSSSS S+ S
Sbjct: 440 SSSSPSSSSSGPSSSSSSPSSSSS 369
Score = 31.2 bits (69), Expect = 1.5
Identities = 35/132 (26%), Positives = 49/132 (36%), Gaps = 2/132 (1%)
Frame = -1
Query: 197 GGSTVGNPSPAKSASQREEMQQGGDQGVDQQASSPLQDTTSIPVEMAQAKKTSGKRSSRK 256
GG V + S + S+S + +SS + P+ + S S
Sbjct: 620 GGCGVSSSSSSSSSSSSSPSSSSSSSPLSSPSSSSSPSSLPSPLASSSGSPPSSPSSPEN 441
Query: 257 SGSSSSHHSK--SSTSSSPLKASGPKRVGMSKMAVPRATWFSSKPPPIALSSSSSDLESS 314
S SS S S SS+SSSP +S +S R F K SS +L S+
Sbjct: 440 SSSSPSSSSSGPSSSSSSPSSSS-----SVSLFLFCR*ARFLPK------RSSKGNLPST 294
Query: 315 SSSLDSTESDPV 326
S TE P+
Sbjct: 293 SVKFGDTELVPL 258
>TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 850
Score = 37.0 bits (84), Expect = 0.028
Identities = 32/81 (39%), Positives = 40/81 (48%), Gaps = 3/81 (3%)
Frame = -1
Query: 249 SGKRSSRKSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFSSKPP--PIALSS 306
S SS S SSSS S SS SSS + + +A ++ +S PP P SS
Sbjct: 523 SSSSSSSPSSSSSSSPSSSSLSSSSSSSPSSSSLPPPPLASGSSSESASSPPSSPEKSSS 344
Query: 307 SSSDLESSSS-SLDSTESDPV 326
SSS L SS S +L S+ S V
Sbjct: 343 SSSSLSSSPSFTLSSSSSSSV 281
Score = 35.4 bits (80), Expect = 0.081
Identities = 28/74 (37%), Positives = 32/74 (42%)
Frame = -1
Query: 250 GKRSSRKSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFSSKPPPIALSSSSS 309
G S S SS S S SS SSS L +S S + P SS + SS
Sbjct: 535 GCGDSSSSSSSPSSSSSSSPSSSSLSSSSSSSPSSSSLPPPPLASGSSSESASSPPSSPE 356
Query: 310 DLESSSSSLDSTES 323
SSSSSL S+ S
Sbjct: 355 KSSSSSSSLSSSPS 314
Score = 34.3 bits (77), Expect = 0.18
Identities = 36/118 (30%), Positives = 45/118 (37%), Gaps = 6/118 (5%)
Frame = -1
Query: 218 QGGDQGVDQQASSPLQDTTSIPVEMAQAKKTSGKRSSRKSGSSSSHHSKSSTSSSPLKAS 277
+GG +SSP ++S P SS S SSSS S SS PL +
Sbjct: 541 EGGCGDSSSSSSSPSSSSSSSP------------SSSSLSSSSSSSPSSSSLPPPPLASG 398
Query: 278 GPKRVGMSKMAVPRATWFS----SKPPPIALSSSSSDLESSSSSLDSTESDPV--WDK 329
S + P + S S P LSSSSS S +S S P+ W K
Sbjct: 397 SSSESASSPPSSPEKSSSSSSSLSSSPSFTLSSSSSSSVSLASLFSSEVCFPLHSWSK 224
Score = 33.9 bits (76), Expect = 0.23
Identities = 33/93 (35%), Positives = 41/93 (43%)
Frame = -1
Query: 245 AKKTSGKRSSRKSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFSSKPPPIAL 304
+ +S SS S S SS SS+SSSP +S P S + A SS P
Sbjct: 523 SSSSSSSPSSSSSSSPSSSSLSSSSSSSPSSSSLPPPPLASGSSSESA---SSPPSSPEK 353
Query: 305 SSSSSDLESSSSSLDSTESDPVWDKLTFYFNSK 337
SSSSS SSS S + S L F+S+
Sbjct: 352 SSSSSSSLSSSPSFTLSSSSSSSVSLASLFSSE 254
Score = 32.0 bits (71), Expect = 0.89
Identities = 39/135 (28%), Positives = 55/135 (39%), Gaps = 3/135 (2%)
Frame = -1
Query: 195 GAGGSTVGNPSPAKSASQREEMQQGGDQGVDQQASSPLQDTTSIPVEMAQAKKTSGKRSS 254
G G S+ + SP+ S+S +SSP ++S+P + +S SS
Sbjct: 535 GCGDSSSSSSSPSSSSSSSPSSSSLSSSS----SSSP--SSSSLPPPPLASGSSSESASS 374
Query: 255 RKSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFSSKPPPIALSSSSSDLESS 314
S S S SS SSSP S +V A+ FSS+ S S +L S+
Sbjct: 373 PPSSPEKSSSSSSSLSSSPSFTLS----SSSSSSVSLASLFSSEVCFPLHSWSKGNLPST 206
Query: 315 ---SSSLDSTESDPV 326
+ L S DPV
Sbjct: 205 IGDTKLLTSVRRDPV 161
>TC204966 similar to UP|HMD1_ARATH (P14891)
3-hydroxy-3-methylglutaryl-coenzyme A reductase 1
(HMG-CoA reductase 1) (HMGR1) , partial (30%)
Length = 753
Score = 37.0 bits (84), Expect = 0.028
Identities = 30/109 (27%), Positives = 43/109 (38%)
Frame = +1
Query: 175 PKTRKRGATPTTSASQKRAKGAGGSTVGNPSPAKSASQREEMQQGGDQGVDQQASSPLQD 234
P T +RG TP + + S +P+P+ S S G + A++PL
Sbjct: 115 PSTTRRGGTPPLPLPRPPTRSL--SLFTSPTPSSSRSSSPSPTSSSTAGATRSAATPLST 288
Query: 235 TTSIPVEMAQAKKTSGKRSSRKSGSSSSHHSKSSTSSSPLKASGPKRVG 283
+ P S S SS+S S +STSSSP + P G
Sbjct: 289 LSLCP--------RSPPFSPSSPPSSTSSASSASTSSSPSSHAPPTTPG 411
Score = 35.8 bits (81), Expect = 0.062
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 259 SSSSHHSKSSTSSSPLKASGPKRVGMSKMAV-PRATWFSSKPPPIALSSSSSDLESSSSS 317
SSS S S TSSS A+ +S +++ PR+ FS PP + SS+SS SSS S
Sbjct: 205 SSSRSSSPSPTSSSTAGATRSAATPLSTLSLCPRSPPFSPSSPPSSTSSASSASTSSSPS 384
Query: 318 LDSTESDP 325
+ + P
Sbjct: 385 SHAPPTTP 408
>TC226370 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich protein,
partial (43%)
Length = 1810
Score = 36.6 bits (83), Expect = 0.036
Identities = 43/196 (21%), Positives = 73/196 (36%), Gaps = 5/196 (2%)
Frame = +2
Query: 241 EMAQAKKTSGKRSSRKSGSSSSHHS-----KSSTSSSPLKASGPKRVGMSKMAVPRATWF 295
E+A+ +K K + SSSS HS +SS ++ P K ++A+
Sbjct: 443 ELAETQKELAKLQLAQKESSSSSHSQSNEERSSPTTDPKKTDNASDANNQQLALALPHQI 622
Query: 296 SSKPPPIALSSSSSDLESSSSSLDSTESDPVWDKLTFYFNSKPIAWQHPGCEPYYTKECR 355
+ +P P A + + + + P + T N P QHP + + +
Sbjct: 623 APQPQPPAPQVQAQAQAPAPNVTQVPQQPPYYMPPTPLPN--PAVPQHPQNQYLPSDQQY 796
Query: 356 DNLSNFPPQDMQNRPSPAREENIPHDEVQGGEDPIIQPDQVIGVMPPPKADVLASAHSEP 415
+ PQ ++ +P+ + H + Q + QP Q VL S+P
Sbjct: 797 RTPQHVAPQPTPSQVTPSPVQQFSHYQQQQQQPQQQQPQQ----QQQWSQQVLP---SQP 955
Query: 416 SPRQFQTSPQQPRLSP 431
P Q Q P P + P
Sbjct: 956 PPMQSQVRPPSPNVYP 1003
>TC216648 weakly similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (41%)
Length = 2064
Score = 36.6 bits (83), Expect = 0.036
Identities = 31/143 (21%), Positives = 62/143 (42%), Gaps = 3/143 (2%)
Frame = +1
Query: 159 EDDDDDDVALADKLKIPKTRKRGATPTTSASQKRAKGAGGSTVGNPSPAKSASQREEMQQ 218
+DD+DD L+D + + + A P + + ++ S ++ + ++ +++
Sbjct: 1054 DDDEDDKAELSDAKGVSQEDEDVAVPNNESDDEESR---SEEEEEKSKSRKRTSKKAVKE 1224
Query: 219 GGDQGVDQQAS---SPLQDTTSIPVEMAQAKKTSGKRSSRKSGSSSSHHSKSSTSSSPLK 275
D+ +S +P++D SI E + K TS K + +S+S +S K
Sbjct: 1225 SSVSKADRTSSVKKTPVKDAKSI--EKTKKKPTSKKGVAEHDSASASVSKSKQPASKKQK 1398
Query: 276 ASGPKRVGMSKMAVPRATWFSSK 298
+ K+ K A + T SSK
Sbjct: 1399 TASEKQDTKGKAASKKRTDKSSK 1467
>TC229926 similar to UP|Q93VB2 (Q93VB2) AT3g62770/F26K9_200, partial (46%)
Length = 829
Score = 36.2 bits (82), Expect = 0.047
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 16/160 (10%)
Frame = +1
Query: 204 PSPAKSASQREEMQQGGDQGVDQQASSPLQDTTSIPVEMAQAKKTSGKRSSRKSGSSSSH 263
P+P S++ G AS+ TT+ P + A ++ +S S SS+
Sbjct: 232 PTPPPSSTSPSIRTPGASPPPPTAASA---STTATPSARSSAATSAPAAASASSTCSSAA 402
Query: 264 HSKSSTSSSP--LKASGPKRVGMSKMAVPRATWFS-----SKPPPIALSSSSSDLESSSS 316
S S++++P A+ P R P A+ S S+ A + SSS + SS
Sbjct: 403 TSSPSSAAAPPPTPATLPTRS*SGTTTCPAASASSPSARRSRASASAATESSSSSPTRSS 582
Query: 317 SLDS------TESDPVWDK---LTFYFNSKPIAWQHPGCE 347
S S T+S P+ TF+ + P W PGC+
Sbjct: 583 STTSPISKCCTKSRPLQTLKAYATFHMSPPPWCWSAPGCK 702
>TC219641 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 942
Score = 35.8 bits (81), Expect = 0.062
Identities = 39/125 (31%), Positives = 51/125 (40%)
Frame = -2
Query: 196 AGGSTVGNPSPAKSASQREEMQQGGDQGVDQQASSPLQDTTSIPVEMAQAKKTSGKRSSR 255
AGG + S + S+S +SSPL ++S P + + S +
Sbjct: 662 AGGCGTSSSSSSSSSSPSSS---------SSPSSSPLSSSSSSPPSSSSSPSLSLPPAPL 510
Query: 256 KSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFSSKPPPIALSSSSSDLESSS 315
SGSSS +S+S SP K+S P SS A SSSSS SSS
Sbjct: 509 ASGSSSG---SASSSPSPEKSSSP----------------SSSS*SSASSSSSSSSPSSS 387
Query: 316 SSLDS 320
SL S
Sbjct: 386 ESLAS 372
Score = 34.7 bits (78), Expect = 0.14
Identities = 30/93 (32%), Positives = 41/93 (43%), Gaps = 3/93 (3%)
Frame = -2
Query: 245 AKKTSGKRSSRKSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRAT---WFSSKPPP 301
+ +S SS S SS S SS+SSSP +S + + + + SS P P
Sbjct: 644 SSSSSSSSSSPSSSSSPSSSPLSSSSSSPPSSSSSPSLSLPPAPLASGSSSGSASSSPSP 465
Query: 302 IALSSSSSDLESSSSSLDSTESDPVWDKLTFYF 334
SS SS SS+SS S+ S + L F
Sbjct: 464 EKSSSPSSSS*SSASSSSSSSSPSSSESLASLF 366
Score = 31.2 bits (69), Expect = 1.5
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -2
Query: 258 GSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWFSSKP---PPIALSSSSSDLESS 314
G+SSS SS+SSSP +S P +S + + SS PP L+S SS +S
Sbjct: 650 GTSSSS---SSSSSSPSSSSSPSSSPLSSSSSSPPSSSSSPSLSLPPAPLASGSSSGSAS 480
Query: 315 SSSLDSTESDP 325
SS S P
Sbjct: 479 SSPSPEKSSSP 447
>AW185139 similar to GP|4107037|dbj| HMG-CoA reductase {Cucumis melo},
partial (15%)
Length = 447
Score = 35.4 bits (80), Expect = 0.081
Identities = 27/95 (28%), Positives = 44/95 (45%)
Frame = +3
Query: 231 PLQDTTSIPVEMAQAKKTSGKRSSRKSGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVP 290
PL ++ + ++ + S RSS +SSS + ++++PL S P
Sbjct: 81 PLPRPPTLSLSLSTSPTRSSSRSSSPLLTSSSTAGATRSAATPLSTSS---------LSP 233
Query: 291 RATWFSSKPPPIALSSSSSDLESSSSSLDSTESDP 325
R+ FS PP + SS+SS SSS S + + P
Sbjct: 234 RSPPFSPSSPPSSTSSASSASTSSSPSSHAPPTTP 338
Score = 28.9 bits (63), Expect = 7.5
Identities = 23/83 (27%), Positives = 35/83 (41%)
Frame = +3
Query: 203 NPSPAKSASQREEMQQGGDQGVDQQASSPLQDTTSIPVEMAQAKKTSGKRSSRKSGSSSS 262
+P+ + S S + G + A++PL ++ P S S SS+S
Sbjct: 123 SPTRSSSRSSSPLLTSSSTAGATRSAATPLSTSSLSP--------RSPPFSPSSPPSSTS 278
Query: 263 HHSKSSTSSSPLKASGPKRVGMS 285
S +STSSSP + P G S
Sbjct: 279 SASSASTSSSPSSHAPPTTPGTS 347
>TC222379 homologue to UP|Q9HGV7 (Q9HGV7) Gbeta like protein, partial (84%)
Length = 950
Score = 35.4 bits (80), Expect = 0.081
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Frame = +2
Query: 192 RAKGAGGSTVGNPSPAKSASQREEMQQGGDQGVDQQASSPLQDTTSIPVEMAQAKKTSGK 251
R +G S P SA+ + + P+ +S A S
Sbjct: 101 RPSASGSSPPARPPAVSSATTTTSFPSASPPTTVRSSPVPVTAPSSCGTPSVTASTPSPT 280
Query: 252 RSSRK-SGSSSSHHSKSSTSSSPLKASGPKRVGMSKMAVPRATWF-------SSKPPPIA 303
R++ S +S+S + + SSSPL + R G S +AV R T S PP+A
Sbjct: 281 RATPSGSPASASPPTPRTPSSSPLAGTSSSRSGSSPLAVSRLTTLVTLVTSTPSPSPPMA 460
Query: 304 LSS 306
LS+
Sbjct: 461 LSA 469
>TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 1056
Score = 35.0 bits (79), Expect = 0.11
Identities = 37/116 (31%), Positives = 49/116 (41%), Gaps = 12/116 (10%)
Frame = +3
Query: 220 GDQGVDQQASSPLQDTTSIPVEMAQAKKTSGKRSSRKSGSSSSHHSKSSTSSSPLKASGP 279
G +SS ++S P + + +S SS S SSSS S SS+SSS +S P
Sbjct: 291 GGCNASSSSSSSSFSSSSAPSSSSSSPASSSSSSSSSSSSSSS*SSPSSSSSSSPFSSAP 470
Query: 280 KR------------VGMSKMAVPRATWFSSKPPPIALSSSSSDLESSSSSLDSTES 323
+ + P + SS P P S SSS S SSSL S+ S
Sbjct: 471 PAPPSGAFFELLLLLELLPYPPPSSDDNSSSPSPNPPSPSSS--SSPSSSLPSSPS 632
Score = 28.5 bits (62), Expect = 9.9
Identities = 29/84 (34%), Positives = 37/84 (43%), Gaps = 6/84 (7%)
Frame = +3
Query: 295 FSSKPPPIALSSS---SSDLESSSSSLDSTESDPVWDKLTFYFNSKPIAWQHPGCEPYYT 351
FSS P + SSS SS SSSSS S+ S P + F+S P A P ++
Sbjct: 330 FSSSSAPSSSSSSPASSSSSSSSSSSSSSS*SSPSSSSSSSPFSSAPPA---PPSGAFFE 500
Query: 352 KECRDNLSNFPP---QDMQNRPSP 372
L +PP D + PSP
Sbjct: 501 LLLLLELLPYPPPSSDDNSSSPSP 572
>TC213991 similar to UP|Q6H976 (Q6H976) STYLOSA protein, partial (12%)
Length = 440
Score = 35.0 bits (79), Expect = 0.11
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Frame = +3
Query: 418 RQFQTSPQQPRLSPQRLQQDARAALLSPHAKG--GSASSKTAASSHTSSERLSALLVEDP 475
+Q Q QQ + PQ+ Q RA LL+ A G G+ + A ++ ERL L DP
Sbjct: 63 QQQQPQSQQQQSQPQQQQSRDRAHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDP 242
Query: 476 L--SIFQSFFDGTLDLESPPRQAETAETAQSGGVPDDSRIEAA 516
L + + F + P A ++A + G P + A
Sbjct: 243 LDDAAMKQRFGENMGQLLDPNHASILKSAAAPGQPSGQVLHGA 371
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.312 0.129 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,648,287
Number of Sequences: 63676
Number of extensions: 485364
Number of successful extensions: 5104
Number of sequences better than 10.0: 225
Number of HSP's better than 10.0 without gapping: 3789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4514
length of query: 653
length of database: 12,639,632
effective HSP length: 103
effective length of query: 550
effective length of database: 6,081,004
effective search space: 3344552200
effective search space used: 3344552200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0545.2