BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0544.2
(141 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204108 homologue to UP|H2A_CICAR (O65759) Histone H2A, partial... 265 7e-72
TC204115 homologue to UP|H2A_CICAR (O65759) Histone H2A, partial... 263 2e-71
TC204116 homologue to UP|H2A_CICAR (O65759) Histone H2A, partial... 234 8e-63
TC204114 similar to UP|H2A_CICAR (O65759) Histone H2A, partial (... 234 1e-62
TC204112 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (96%) 202 3e-53
TC204113 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (96%) 201 7e-53
TC204109 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (96%) 201 9e-53
TC214766 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (97%) 183 3e-47
TC214761 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (97%) 181 1e-46
TC214763 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (97%) 181 1e-46
TC214764 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (97%) 181 1e-46
TC214762 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (97%) 181 1e-46
TC214765 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (94%) 179 4e-46
TC206108 similar to UP|Q94F49 (Q94F49) AT5g27670/F15A18_130, par... 169 3e-43
TC214772 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (97%) 100 8e-43
TC214774 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (97%) 101 3e-42
BI969935 similar to GP|7649159|gb| histone H2A {Euphorbia esula}... 124 9e-35
TC204120 homologue to UP|H2A_CICAR (O65759) Histone H2A, partial... 132 7e-32
TC214773 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (80%) 127 2e-30
TC205288 homologue to UP|H2AV_DROME (P08985) Histone H2A variant... 126 3e-30
>TC204108 homologue to UP|H2A_CICAR (O65759) Histone H2A, partial (96%)
Length = 751
Score = 265 bits (676), Expect = 7e-72
Identities = 138/141 (97%), Positives = 140/141 (98%)
Frame = +1
Query: 1 MSSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 60
MSSTGG+ TKGGRGKPKA+KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA
Sbjct: 106 MSSTGGS-TKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 282
Query: 61 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 120
VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ
Sbjct: 283 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 462
Query: 121 TLLPKKAGKGKGEIGSASQEF 141
TLLPKKAGKGKGEIGSASQEF
Sbjct: 463 TLLPKKAGKGKGEIGSASQEF 525
>TC204115 homologue to UP|H2A_CICAR (O65759) Histone H2A, partial (96%)
Length = 722
Score = 263 bits (672), Expect = 2e-71
Identities = 137/141 (97%), Positives = 139/141 (98%)
Frame = +1
Query: 1 MSSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 60
MSSTGG+ TKGGRGKPKA+KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA
Sbjct: 85 MSSTGGS-TKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 261
Query: 61 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 120
VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ
Sbjct: 262 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 441
Query: 121 TLLPKKAGKGKGEIGSASQEF 141
TLLPKK GKGKGEIGSASQEF
Sbjct: 442 TLLPKKVGKGKGEIGSASQEF 504
>TC204116 homologue to UP|H2A_CICAR (O65759) Histone H2A, partial (95%)
Length = 788
Score = 234 bits (598), Expect = 8e-63
Identities = 124/144 (86%), Positives = 132/144 (91%), Gaps = 3/144 (2%)
Frame = +2
Query: 1 MSSTGGNNT--KGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL 58
MSST T KGGRGKPK +KSVSRS KAGLQFPVGR+AR+LKAG+YA+RVG+G+PVYL
Sbjct: 113 MSSTEAAATEKKGGRGKPKTSKSVSRSSKAGLQFPVGRVARYLKAGRYAQRVGSGSPVYL 292
Query: 59 SAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNI 118
SAVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKL+GSVTIANGGVLPNI
Sbjct: 293 SAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLMGSVTIANGGVLPNI 472
Query: 119 HQTLLPKK-AGKGKGEIGSASQEF 141
HQ LLPKK AGKGK EIGSASQEF
Sbjct: 473 HQNLLPKKVAGKGKTEIGSASQEF 544
>TC204114 similar to UP|H2A_CICAR (O65759) Histone H2A, partial (96%)
Length = 717
Score = 234 bits (597), Expect = 1e-62
Identities = 123/144 (85%), Positives = 130/144 (89%), Gaps = 3/144 (2%)
Frame = +3
Query: 1 MSST--GGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL 58
MSST KGGRGKPK KSVSRS KAGLQFPVGR+AR+LKAG+YA+RVG+G+PVYL
Sbjct: 72 MSSTEVAATTKKGGRGKPKTTKSVSRSSKAGLQFPVGRVARYLKAGRYAQRVGSGSPVYL 251
Query: 59 SAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNI 118
SAVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKL+GSVTIANGGVLPNI
Sbjct: 252 SAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLMGSVTIANGGVLPNI 431
Query: 119 HQTLLPKK-AGKGKGEIGSASQEF 141
HQ LLPKK AGKGK EIGSASQEF
Sbjct: 432 HQNLLPKKAAGKGKPEIGSASQEF 503
>TC204112 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (96%)
Length = 714
Score = 202 bits (515), Expect = 3e-53
Identities = 107/130 (82%), Positives = 112/130 (85%), Gaps = 4/130 (3%)
Frame = +2
Query: 3 STGGNNTKGGRGKP----KAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL 58
S G ++ GRGK A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL
Sbjct: 65 SLGHTSSMAGRGKTLGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL 244
Query: 59 SAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNI 118
+AVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNI
Sbjct: 245 AAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNI 424
Query: 119 HQTLLPKKAG 128
H LLPKKAG
Sbjct: 425 HNLLLPKKAG 454
>TC204113 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (96%)
Length = 803
Score = 201 bits (512), Expect = 7e-53
Identities = 108/140 (77%), Positives = 117/140 (83%), Gaps = 4/140 (2%)
Frame = +2
Query: 5 GGNNTKGGRGKP----KAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 60
G +++ GRGK A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+A
Sbjct: 95 G*SSSMAGRGKTLGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAA 274
Query: 61 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 120
VLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH
Sbjct: 275 VLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHN 454
Query: 121 TLLPKKAGKGKGEIGSASQE 140
LLPKKAG G + +A +
Sbjct: 455 LLLPKKAG-GSSKAAAADDD 511
>TC204109 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (96%)
Length = 816
Score = 201 bits (511), Expect = 9e-53
Identities = 106/128 (82%), Positives = 112/128 (86%), Gaps = 4/128 (3%)
Frame = +2
Query: 5 GGNNTKGGRGKP----KAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 60
G +++ GRGK A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+A
Sbjct: 98 G*SSSMAGRGKTLGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAA 277
Query: 61 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 120
VLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH
Sbjct: 278 VLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHN 457
Query: 121 TLLPKKAG 128
LLPKKAG
Sbjct: 458 LLLPKKAG 481
>TC214766 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (97%)
Length = 755
Score = 183 bits (464), Expect = 3e-47
Identities = 99/140 (70%), Positives = 110/140 (77%), Gaps = 4/140 (2%)
Frame = +2
Query: 4 TGGNNTKGGRGK----PKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 59
TGG KG G+ PK K VSRS KAGLQFPVGRI R+LK G+YA+RVG GAPVYL+
Sbjct: 47 TGGKIKKGAGGRKGGGPKK-KPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLA 223
Query: 60 AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 119
AVLEYLAAEVLELAGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+
Sbjct: 224 AVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNIN 403
Query: 120 QTLLPKKAGKGKGEIGSASQ 139
LLPKK + E S S+
Sbjct: 404 PVLLPKKTERASKEPKSPSK 463
>TC214761 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (97%)
Length = 731
Score = 181 bits (459), Expect = 1e-46
Identities = 98/139 (70%), Positives = 109/139 (77%), Gaps = 4/139 (2%)
Frame = +2
Query: 5 GGNNTKGGRGK----PKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 60
GG KG G+ PK K VSRS KAGLQFPVGRI R+LK G+YA+RVG GAPVYL+A
Sbjct: 92 GGKIKKGAGGRKGGGPKK-KPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAA 268
Query: 61 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 120
VLEYLAAEVLELAGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+
Sbjct: 269 VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINP 448
Query: 121 TLLPKKAGKGKGEIGSASQ 139
LLPKK + E S S+
Sbjct: 449 VLLPKKTERASKEPKSPSK 505
>TC214763 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (97%)
Length = 794
Score = 181 bits (459), Expect = 1e-46
Identities = 98/139 (70%), Positives = 109/139 (77%), Gaps = 4/139 (2%)
Frame = +2
Query: 5 GGNNTKGGRGK----PKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 60
GG KG G+ PK K VSRS KAGLQFPVGRI R+LK G+YA+RVG GAPVYL+A
Sbjct: 80 GGKIKKGAGGRKGGGPKK-KPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAA 256
Query: 61 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 120
VLEYLAAEVLELAGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+
Sbjct: 257 VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINP 436
Query: 121 TLLPKKAGKGKGEIGSASQ 139
LLPKK + E S S+
Sbjct: 437 VLLPKKTERASKEPKSPSK 493
>TC214764 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (97%)
Length = 871
Score = 181 bits (459), Expect = 1e-46
Identities = 96/135 (71%), Positives = 107/135 (79%)
Frame = +3
Query: 5 GGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEY 64
G KGG K K VSRS KAGLQFPVGRI R+LK G+YA+RVG GAPVYL+AVLEY
Sbjct: 102 GAGGRKGGGPKKKP---VSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEY 272
Query: 65 LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLP 124
LAAEVLELAGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLP
Sbjct: 273 LAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLP 452
Query: 125 KKAGKGKGEIGSASQ 139
KK+ + E S S+
Sbjct: 453 KKSERASKEPKSPSK 497
>TC214762 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (97%)
Length = 762
Score = 181 bits (458), Expect = 1e-46
Identities = 98/139 (70%), Positives = 109/139 (77%), Gaps = 4/139 (2%)
Frame = +3
Query: 5 GGNNTKGGRGK----PKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 60
GG KG G+ PK K VSRS KAGLQFPVGRI R+LK G+YA+RVG GAPVYL+A
Sbjct: 144 GGKIKKGAGGRKGGGPKK-KPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAA 320
Query: 61 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 120
VLEYLAAEVLELAGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+
Sbjct: 321 VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINP 500
Query: 121 TLLPKKAGKGKGEIGSASQ 139
LLPKK + E S S+
Sbjct: 501 VLLPKKTERAAKEPKSPSK 557
>TC214765 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (94%)
Length = 635
Score = 179 bits (454), Expect = 4e-46
Identities = 96/131 (73%), Positives = 105/131 (79%), Gaps = 4/131 (3%)
Frame = +2
Query: 5 GGNNTKGGRGK----PKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 60
GG KG G+ PK K VSRS KAGLQFPVGRI R+LK G+YA+RVG GAPVYL+A
Sbjct: 50 GGKIKKGAGGRKGGGPKK-KPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAA 226
Query: 61 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 120
VLEYLAAEVLELAGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+
Sbjct: 227 VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINP 406
Query: 121 TLLPKKAGKGK 131
LLPKK K
Sbjct: 407 VLLPKKTQVAK 439
>TC206108 similar to UP|Q94F49 (Q94F49) AT5g27670/F15A18_130, partial (75%)
Length = 768
Score = 169 bits (429), Expect = 3e-43
Identities = 89/126 (70%), Positives = 102/126 (80%)
Frame = +2
Query: 11 GGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 70
G RG K KSVS+S KAGLQFPV R+AR+LK G+Y+ R+G GAP+YL+AVLEYLAAEVL
Sbjct: 122 GRRGDRK--KSVSKSIKAGLQFPVSRVARYLKKGRYSRRLGTGAPIYLAAVLEYLAAEVL 295
Query: 71 ELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKAGKG 130
ELAGNAARDNKKNRI PRH+ LAVRND+EL KLL VTIA+GGVLPNI+ LLPKK+
Sbjct: 296 ELAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLLPKKSTTA 475
Query: 131 KGEIGS 136
E S
Sbjct: 476 PSEKSS 493
>TC214772 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (97%)
Length = 749
Score = 100 bits (250), Expect(2) = 8e-43
Identities = 51/72 (70%), Positives = 58/72 (79%)
Frame = +1
Query: 68 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKA 127
+VLELAGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLPKK
Sbjct: 364 KVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 543
Query: 128 GKGKGEIGSASQ 139
+ E S S+
Sbjct: 544 ERASKEPKSPSK 579
Score = 89.0 bits (219), Expect(2) = 8e-43
Identities = 49/70 (70%), Positives = 54/70 (77%), Gaps = 4/70 (5%)
Frame = +3
Query: 4 TGGNNTKGGRGK----PKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 59
TGG KG G+ PK K VSRS KAGLQFPVGRI R+LK G+YA+RVG GAPVYL+
Sbjct: 72 TGGKIKKGAGGRKGGGPKK-KPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLA 248
Query: 60 AVLEYLAAEV 69
AVLEYLAAEV
Sbjct: 249 AVLEYLAAEV 278
>TC214774 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (97%)
Length = 702
Score = 101 bits (251), Expect(2) = 3e-42
Identities = 51/72 (70%), Positives = 59/72 (81%)
Frame = +1
Query: 68 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKA 127
+VLELAGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLPKK+
Sbjct: 322 KVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 501
Query: 128 GKGKGEIGSASQ 139
+ E S S+
Sbjct: 502 ERASKEPKSPSK 537
Score = 86.7 bits (213), Expect(2) = 3e-42
Identities = 46/65 (70%), Positives = 50/65 (76%)
Frame = +2
Query: 5 GGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEY 64
G KGG K K VSRS KAGLQFPVGRI R+LK G+YA+RVG GAPVYL+AVLEY
Sbjct: 32 GAGGRKGGGPKKKP---VSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEY 202
Query: 65 LAAEV 69
LAAEV
Sbjct: 203LAAEV 217
>BI969935 similar to GP|7649159|gb| histone H2A {Euphorbia esula}, partial
(80%)
Length = 625
Score = 124 bits (312), Expect(2) = 9e-35
Identities = 69/102 (67%), Positives = 79/102 (76%), Gaps = 4/102 (3%)
Frame = -2
Query: 3 STGGNNTKGGRGK----PKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL 58
+ GG KG G+ PK K VSRS KAGLQ VGRI R+LK G+YA+RVG GAPV L
Sbjct: 579 AAGGKIKKGAGGRKGGGPKK-KPVSRSVKAGLQXXVGRIGRYLKKGRYAQRVGTGAPVCL 403
Query: 59 SAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEEL 100
+AVLEYLAAEVLELAGN+ARDNKKNRI+PR LAVR+DEE+
Sbjct: 402 AAVLEYLAAEVLELAGNSARDNKKNRIIPRXXLLAVRSDEEV 277
Score = 38.1 bits (87), Expect(2) = 9e-35
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -1
Query: 107 VTIANGGVLPNIHQTLLPKKAGKGKGEIGSASQEF 141
VTIA+GGVLP+I LLPKK+ +G E S S+ +
Sbjct: 259 VTIAHGGVLPSISPVLLPKKSERGSKEPKSPSRGY 155
>TC204120 homologue to UP|H2A_CICAR (O65759) Histone H2A, partial (57%)
Length = 452
Score = 132 bits (331), Expect = 7e-32
Identities = 69/74 (93%), Positives = 70/74 (94%), Gaps = 1/74 (1%)
Frame = +3
Query: 69 VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK-A 127
VLELAGNAARDNKK RIVPRHIQLAVRNDEELSKL+GSVTIANGGVLPNIHQ LLPKK A
Sbjct: 105 VLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLMGSVTIANGGVLPNIHQNLLPKKVA 284
Query: 128 GKGKGEIGSASQEF 141
GKGK EIGSASQEF
Sbjct: 285 GKGKTEIGSASQEF 326
>TC214773 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (80%)
Length = 421
Score = 127 bits (318), Expect = 2e-30
Identities = 65/86 (75%), Positives = 73/86 (84%)
Frame = +2
Query: 54 APVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGG 113
APVYL+AVLEYLAAEVLELAGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GG
Sbjct: 134 APVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGG 313
Query: 114 VLPNIHQTLLPKKAGKGKGEIGSASQ 139
VLPNI+ LLPKK+ + E S S+
Sbjct: 314 VLPNINPVLLPKKSERASKEPKSPSK 391
>TC205288 homologue to UP|H2AV_DROME (P08985) Histone H2A variant, partial
(79%)
Length = 813
Score = 126 bits (317), Expect = 3e-30
Identities = 71/125 (56%), Positives = 89/125 (70%), Gaps = 1/125 (0%)
Frame = +1
Query: 4 TGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLSAVL 62
TG + + K K K +SRS +AGLQFPVGRI R LK+ A RVGA A VY +A+L
Sbjct: 172 TGKTSAANNKDKDKK-KPISRSSRAGLQFPVGRIHRLLKSRTTANGRVGATAAVYSAAIL 348
Query: 63 EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 122
EYL AEVLELAGNA++D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH++L
Sbjct: 349 EYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSL 525
Query: 123 LPKKA 127
+ K +
Sbjct: 526 INKSS 540
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.312 0.132 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,220,669
Number of Sequences: 63676
Number of extensions: 41689
Number of successful extensions: 256
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of query: 141
length of database: 12,639,632
effective HSP length: 88
effective length of query: 53
effective length of database: 7,036,144
effective search space: 372915632
effective search space used: 372915632
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0544.2