TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0544.1
         (309 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC211702                                                              192  2e-49
BE807157                                                              114  6e-26
TC217424                                                               52  3e-07
TC209358 similar to UP|P92987 (P92987) Myosin heavy chain-like p...    28  4.0
CB063340 similar to GP|15010610|gb| At1g05140/YUP8H12_25 {Arabid...    28  6.9
TC204674 similar to UP|Q9ZRV5 (Q9ZRV5) Basic blue copper protein...    27  9.0

>TC211702 
          Length = 465

 Score =  192 bits (488), Expect = 2e-49
 Identities = 96/107 (89%), Positives = 99/107 (91%)
 Frame = +2

Query: 46  KELLKGDDRAALALVKDLQGKPDGLRCFGAARQVPQRLYTLDELKLNGIEAESLLSPVDS 105
           KEL KGDDRAALALVKDLQGKPDGLRCFGAARQVPQRLYTLDEL+LNGIE  SLLSPVD+
Sbjct: 2   KELAKGDDRAALALVKDLQGKPDGLRCFGAARQVPQRLYTLDELRLNGIETLSLLSPVDT 181

Query: 106 TLGSIERTLQIAAIAGGLTAWNAFGISPQQLFYISLGLLFLWTLDTV 152
           TLGSIER LQIAAI GGL AWNAF ISPQQ+FYISLGLLFLWTLD V
Sbjct: 182 TLGSIERNLQIAAIVGGLAAWNAFAISPQQIFYISLGLLFLWTLDAV 322


>BE807157 
          Length = 344

 Score =  114 bits (285), Expect = 6e-26
 Identities = 56/66 (84%), Positives = 62/66 (93%)
 Frame = +3

Query: 194 ILPKGYTLSSLDALKKDGSLNVQAGSAFVDFEFLEEVNAGKVSAKTLNKFSCIALAGVCT 253
           ILP+GYT+SSLDAL+K GSLN+QAG+AFVDFEF EEVN+GKVSA TLNKFSCIALAGV T
Sbjct: 3   ILPRGYTISSLDALQKVGSLNIQAGTAFVDFEFQEEVNSGKVSATTLNKFSCIALAGVST 182

Query: 254 EYLIYG 259
           EYLIYG
Sbjct: 183 EYLIYG 200



 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 45/57 (78%), Positives = 46/57 (79%)
 Frame = +1

Query: 250 GVCTEYLIYGFSEGGLDDIRKLDSLLSGLGFTQKKVDSQVRWSVLNTVLLLRRHEAA 306
           G     L   FSEGGLDDIRKLD LL GLGFTQKK DSQVRWS+LNTVLLLRRHEAA
Sbjct: 172 GCLLNILYMEFSEGGLDDIRKLDLLLKGLGFTQKKTDSQVRWSLLNTVLLLRRHEAA 342


>TC217424 
          Length = 1425

 Score = 52.0 bits (123), Expect = 3e-07
 Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 6/174 (3%)
 Frame = +1

Query: 141 LGLLFLWTLDTVSYGGGLGNLVVDTIGHSFSKKYHNRVIQHEAGHFLIAYLVGILPKGYT 200
           +G + L  L   S   GL    + +    F      R+ +HEA HFLIAYL+G+    Y 
Sbjct: 727 IGSISLVVLAVGSISPGLLQAAIGSFSTLFPDD-QERIARHEAAHFLIAYLLGLPIFDY- 900

Query: 201 LSSLDALKKDGSLNVQAGSAFVDFEFLEEVNAGKVSAKTLNKFSCIALAGVCTEYLIYGF 260
             SLD  K+  +L        +D    + + +G++ A+ L++ + +++AG+  E L Y  
Sbjct: 901 --SLDIGKEHVNL--------IDERLEKLIYSGQLDAQELDRLAVVSMAGLAAEGLTYDK 1050

Query: 261 SEGGLDDIRKLDSLLSGLGFTQKKVDSQ--VRWSVLNTVLLLRR----HEAARA 308
             G   D+  L   ++       K   Q   RW+VL    LL+     HEA  A
Sbjct: 1051VVGQSADLFSLQRFINRTKPPLSKDQQQNLTRWAVLFAASLLKNNKVTHEALMA 1212


>TC209358 similar to UP|P92987 (P92987) Myosin heavy chain-like protein,
           partial (17%)
          Length = 740

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 26/91 (28%), Positives = 37/91 (40%)
 Frame = +1

Query: 38  RQLLEKLDKELLKGDDRAALALVKDLQGKPDGLRCFGAARQVPQRLYTLDELKLNGIEAE 97
           R+ +E+L ++LL+ D+     L+K  +   D +  F A          LDELK    E E
Sbjct: 7   REQVEELQRKLLEKDE-----LLKSAENTRDQMNVFNAK---------LDELKHQASEKE 144

Query: 98  SLLSPVDSTLGSIERTLQIAAIAGGLTAWNA 128
           SLL      L   +  L     A     W A
Sbjct: 145 SLLKYTQQQLSDAKIKLADKQAALEKIQWEA 237


>CB063340 similar to GP|15010610|gb| At1g05140/YUP8H12_25 {Arabidopsis
           thaliana}, partial (18%)
          Length = 421

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/39 (35%), Positives = 21/39 (52%)
 Frame = +3

Query: 178 VIQHEAGHFLIAYLVGILPKGYTLSSLDALKKDGSLNVQ 216
           ++ HE+GHFL A L GI    + +     L K  + NV+
Sbjct: 288 IVVHESGHFLAASLQGIHVSKFAVGFGPILAKFNAKNVE 404


>TC204674 similar to UP|Q9ZRV5 (Q9ZRV5) Basic blue copper protein, partial
           (98%)
          Length = 635

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 147 WTLDTVSYGGGLGNLVVDTIGHSFSKKYHNRVIQHEAGH 185
           WT +TV++  G      DT+  ++S   HN V   +AG+
Sbjct: 158 WTFNTVTWPQGKRFTAGDTLAFNYSPGAHNVVAVSKAGY 274


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.321    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,770,493
Number of Sequences: 63676
Number of extensions: 158608
Number of successful extensions: 714
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of query: 309
length of database: 12,639,632
effective HSP length: 97
effective length of query: 212
effective length of database: 6,463,060
effective search space: 1370168720
effective search space used: 1370168720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)