BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0520.11
(117 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BM527469 164 6e-42
TC212180 47 2e-06
TC214784 similar to UP|Q9LZI2 (Q9LZI2) DTDP-glucose 4-6-dehydrat... 28 0.62
TC223567 similar to UP|Q75XU7 (Q75XU7) RIO kinase, partial (24%) 28 0.81
TC226268 similar to UP|Q9SXL2 (Q9SXL2) Serine decarboxylase, par... 28 0.81
TC214781 similar to UP|Q39077 (Q39077) Homolog of dTDP-glucose 4... 28 0.81
TC222065 27 1.1
BM307869 weakly similar to GP|20145851|emb auxin response factor... 27 1.1
CA818886 27 1.1
BI892872 similar to GP|20197242|gb| expressed protein {Arabidops... 27 1.4
TC212313 27 1.4
TC205120 weakly similar to UP|Q7KSD3 (Q7KSD3) CG7693-PA (Cg7693-... 27 1.8
BI942627 homologue to GP|28851946|gb lysyl-tRNA synthetase {Pseu... 27 1.8
AW185460 27 1.8
TC215623 similar to UP|Q9LNJ1 (Q9LNJ1) F6F3.12 protein, partial ... 27 1.8
AI938007 similar to PIR|T51310|T513 RNA helicase RH28 [imported]... 26 2.4
CD406094 26 2.4
TC205119 26 2.4
TC226339 homologue to UP|Q41123 (Q41123) PVPR3 protein, partial ... 26 2.4
TC206664 26 2.4
>BM527469
Length = 421
Score = 164 bits (415), Expect = 6e-42
Identities = 80/118 (67%), Positives = 99/118 (83%), Gaps = 1/118 (0%)
Frame = +1
Query: 1 MSLNCLTCSQNLQRTDSFGEFFTEKEYKEVCKKVDRNWSGNLIASSSSSSSTSQCDLPKG 60
MSLNCLTCSQ LQRTDS+GE F EKEY ++CK+V+R+WS N+ SSST++C+LPK
Sbjct: 49 MSLNCLTCSQLLQRTDSYGELFVEKEYTKICKQVNRSWSSNM------SSSTTKCELPK- 207
Query: 61 QGGNVAKIKAEHRRVHSTGNIPYP-GSSQPKLVRSSGMRRDWSFENLAENQDQSVSCH 117
GG VAK+KA+HRR +STG++PYP GS+ PKLVRSSGMRR+WSFE++AE QDQ VSCH
Sbjct: 208 -GGAVAKVKADHRRNYSTGDVPYPSGSAGPKLVRSSGMRRNWSFEDVAETQDQGVSCH 378
>TC212180
Length = 435
Score = 46.6 bits (109), Expect = 2e-06
Identities = 20/26 (76%), Positives = 22/26 (83%)
Frame = +3
Query: 92 VRSSGMRRDWSFENLAENQDQSVSCH 117
VRSSGMRRDWSFE+LA QD+ V CH
Sbjct: 15 VRSSGMRRDWSFEDLAGQQDKGVRCH 92
>TC214784 similar to UP|Q9LZI2 (Q9LZI2) DTDP-glucose 4-6-dehydratase homolog
D18 (At3g62830/F26K9_260), partial (84%)
Length = 1652
Score = 28.1 bits (61), Expect = 0.62
Identities = 18/41 (43%), Positives = 21/41 (50%), Gaps = 4/41 (9%)
Frame = +3
Query: 46 SSSSSSTSQCDLPKGQGGNVAKIKAEHRR----VHSTGNIP 82
S+SSSS S LP +KI A H R VHS G +P
Sbjct: 231 SASSSSVSYESLPISYFERESKIPAYHHRVAAAVHSVGKVP 353
>TC223567 similar to UP|Q75XU7 (Q75XU7) RIO kinase, partial (24%)
Length = 632
Score = 27.7 bits (60), Expect = 0.81
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 41 NLIASSSSSSSTSQCDLPKGQGGNVAKIKAEHRRVHSTGNIPYP 84
N + +SS S LP GQ N A HR H+ + P+P
Sbjct: 533 NCLLNSSPVCFLSSFSLPNGQVSNTAANCCRHRIRHANIHSPFP 402
>TC226268 similar to UP|Q9SXL2 (Q9SXL2) Serine decarboxylase, partial (81%)
Length = 1703
Score = 27.7 bits (60), Expect = 0.81
Identities = 13/45 (28%), Positives = 19/45 (41%)
Frame = +1
Query: 14 RTDSFGEFFTEKEYKEVCKKVDRNWSGNLIASSSSSSSTSQCDLP 58
R + F + Y+ C+KVD WSG + + S D P
Sbjct: 682 RESHYSVFKAARMYRMECEKVDTLWSGEIDCDDFKAKLLSHQDKP 816
>TC214781 similar to UP|Q39077 (Q39077) Homolog of dTDP-glucose
4-6-dehydratases (AT3g62830/F26K9_260) (UDP-glucuronic
acid decarboxylase), partial (13%)
Length = 504
Score = 27.7 bits (60), Expect = 0.81
Identities = 18/44 (40%), Positives = 21/44 (46%), Gaps = 4/44 (9%)
Frame = +3
Query: 43 IASSSSSSSTSQCDLPKGQGGNVAKIKAEHRR----VHSTGNIP 82
+ SSSSSS LP +KI A H R VHS G +P
Sbjct: 318 LVPSSSSSSVPYESLPISYFERESKIPAYHHRVAAAVHSVGKVP 449
>TC222065
Length = 611
Score = 27.3 bits (59), Expect = 1.1
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Frame = +1
Query: 36 RNWSGNLIASSSSSSSTSQCDLPKGQGGNVA-KIKAEHRRVHSTGNIPYPGSSQPKLVRS 94
R W+GN SSS+ S CD NV K + H R G I + QP+
Sbjct: 64 RFWNGNRFIDSSSAWPCSCCDKFWFDNPNVV*KAQHVHSRYGIHGAITCTQTPQPR---- 231
Query: 95 SGMRRDWSFENLAENQ---DQSVSC 116
M R W + E + VSC
Sbjct: 232 --MGRVWDLHSPCEEEAAPGHGVSC 300
>BM307869 weakly similar to GP|20145851|emb auxin response factor 36
{Arabidopsis thaliana}, partial (8%)
Length = 437
Score = 27.3 bits (59), Expect = 1.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 25 KEYKEVCKKVDRNWSGNLIASSSSSSSTSQCDLPK 59
K +++ + VD N G + S + S TS+C LPK
Sbjct: 238 KCFRKC*QGVDHNRHGEIGRSGGTESGTSKCPLPK 134
>CA818886
Length = 423
Score = 27.3 bits (59), Expect = 1.1
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = +3
Query: 15 TDSFGEFFTEKEYKEVCKK 33
T SFGE +EK++KE C K
Sbjct: 192 TKSFGEGSSEKQFKETCTK 248
>BI892872 similar to GP|20197242|gb| expressed protein {Arabidopsis
thaliana}, partial (17%)
Length = 404
Score = 26.9 bits (58), Expect = 1.4
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = +1
Query: 39 SGNLIASSSSSSSTSQCDLPKGQ 61
S + ASSS+SSS+S+CDL G+
Sbjct: 136 SPKINASSSNSSSSSKCDLFSGK 204
>TC212313
Length = 700
Score = 26.9 bits (58), Expect = 1.4
Identities = 15/51 (29%), Positives = 24/51 (46%)
Frame = +2
Query: 32 KKVDRNWSGNLIASSSSSSSTSQCDLPKGQGGNVAKIKAEHRRVHSTGNIP 82
K+V N +GNL SSSS+S + + + N + + + R N P
Sbjct: 446 KRVVGNVNGNLSTKGGSSSSSSSSSVKRSRSFNAKHLLSWYSRSQRKPNAP 598
>TC205120 weakly similar to UP|Q7KSD3 (Q7KSD3) CG7693-PA (Cg7693-pb)
(RE53265p), partial (20%)
Length = 2170
Score = 26.6 bits (57), Expect = 1.8
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Frame = -2
Query: 32 KKVDRNWSGNLIASSSSS-SSTSQCDLP-----KGQGGN 64
K + R+WS ++ SSS S S T+ LP +G GGN
Sbjct: 1644 KLIIRDWSSEILPSSSCSLSETAVSTLPLFSELRGNGGN 1528
>BI942627 homologue to GP|28851946|gb lysyl-tRNA synthetase {Pseudomonas
syringae pv. tomato str. DC3000}, partial (27%)
Length = 402
Score = 26.6 bits (57), Expect = 1.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 73 RRVHSTGNIPYPGSSQPKLVRSSGMRRDWSFEN 105
RR P PGS++P L R S R W F +
Sbjct: 266 RRRRRPSRPPGPGSARPGLPRRSTRNRRWRFHD 168
>AW185460
Length = 411
Score = 26.6 bits (57), Expect = 1.8
Identities = 16/51 (31%), Positives = 24/51 (46%)
Frame = +2
Query: 12 LQRTDSFGEFFTEKEYKEVCKKVDRNWSGNLIASSSSSSSTSQCDLPKGQG 62
LQ T +FG ++T + E+ D +W+G S+ STS G G
Sbjct: 191 LQGTKAFGIWYTTETNSELLGYTDSDWAG----STDDMKSTSGYAFSLGSG 331
>TC215623 similar to UP|Q9LNJ1 (Q9LNJ1) F6F3.12 protein, partial (10%)
Length = 1905
Score = 26.6 bits (57), Expect = 1.8
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 44 ASSSSSSSTSQCDLPKGQGGNVAKIKAEHRRVHSTGNIPY 83
++SS+S S P QGG K+ TG IPY
Sbjct: 440 SNSSASLEPSDNTNPTSQGGEDLKVNVSPSSQSHTGGIPY 559
>AI938007 similar to PIR|T51310|T513 RNA helicase RH28 [imported] -
Arabidopsis thaliana, partial (4%)
Length = 418
Score = 26.2 bits (56), Expect = 2.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 44 ASSSSSSSTSQCDLPKGQGGNVAKI 68
+S SSSSS S+C + GG+ K+
Sbjct: 82 SSDSSSSSCSECSISSSLGGSKTKL 8
>CD406094
Length = 705
Score = 26.2 bits (56), Expect = 2.4
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Frame = +1
Query: 32 KKVDRNWSGNLIASSSSS-SSTSQCDLP-----KGQGGN 64
K + R+WS ++ SSS S S T+ LP +G GGN
Sbjct: 529 KLIIRDWSSEILPSSSCSLSETAVSALPLFSELRGNGGN 645
>TC205119
Length = 824
Score = 26.2 bits (56), Expect = 2.4
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Frame = -3
Query: 32 KKVDRNWSGNLIASSSSS-SSTSQCDLP-----KGQGGN 64
K + R+WS ++ SSS S S T+ LP +G GGN
Sbjct: 294 KLIIRDWSSEILPSSSCSLSETAVSALPLFSELRGNGGN 178
>TC226339 homologue to UP|Q41123 (Q41123) PVPR3 protein, partial (82%)
Length = 750
Score = 26.2 bits (56), Expect = 2.4
Identities = 18/61 (29%), Positives = 24/61 (38%)
Frame = -3
Query: 51 STSQCDLPKGQGGNVAKIKAEHRRVHSTGNIPYPGSSQPKLVRSSGMRRDWSFENLAENQ 110
S C +GG + + R TG P ++ RSSG RR W + L E
Sbjct: 415 SLRPCSRRSSRGGRSSGARRRRGRHSGTGIQ*APRAADS---RSSGSRRVWGRDRLGERD 245
Query: 111 D 111
D
Sbjct: 244 D 242
>TC206664
Length = 744
Score = 26.2 bits (56), Expect = 2.4
Identities = 21/71 (29%), Positives = 33/71 (45%), Gaps = 6/71 (8%)
Frame = +1
Query: 32 KKVDRNWSGNLIASSSSSSSTSQCDLP------KGQGGNVAKIKAEHRRVHSTGNIPYPG 85
K ++ + S I +SSSSSS +LP +G A++ E V P
Sbjct: 97 KTLENSRSTEYIQASSSSSSRPALELPPVSPSSRGSQSGSARLSLEPPSV-------TPS 255
Query: 86 SSQPKLVRSSG 96
S +PK+ +S+G
Sbjct: 256 SREPKVDKSNG 288
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.311 0.125 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,200,910
Number of Sequences: 63676
Number of extensions: 96503
Number of successful extensions: 535
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of query: 117
length of database: 12,639,632
effective HSP length: 93
effective length of query: 24
effective length of database: 6,717,764
effective search space: 161226336
effective search space used: 161226336
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0520.11