TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0490.9
         (157 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CA937893 similar to GP|20805072|dbj retrovirus-related pol polyp...   102  8e-23
AW760164 similar to GP|11994422|dbj oxidoreductase  short-chain ...    47  4e-06
TC205962 weakly similar to UP|Q41419 (Q41419) Sucrolytic enzyme/...    28  1.8
TC217943 similar to UP|O65645 (O65645) ATM-like protein, partial...    27  4.1
BG508014 GP|15128578|db prolactin receptor {Paralichthys olivace...    27  5.3
TC232483 UP|O82687 (O82687) Tyrosine phosphatase 1, complete           26  6.9
TC207326 homologue to UP|Q9FS24 (Q9FS24) Neoxanthin cleavage enz...    26  9.1

>CA937893 similar to GP|20805072|dbj retrovirus-related pol polyprotein from
           transposon TNT 1-94-like, partial (7%)
          Length = 412

 Score =  102 bits (254), Expect = 8e-23
 Identities = 53/104 (50%), Positives = 71/104 (67%), Gaps = 1/104 (0%)
 Frame = -2

Query: 6   GAKFEVTRLNGTRNFGLWQMRVKDLLAQQGLHKALRD-KSLDIAIVDWNEMKKKAAGLIK 64
           GAKFEV + +GT NF LWQ RVKDLLA QGL K LRD KS +   +DW E+ ++ A  I+
Sbjct: 315 GAKFEVGKFDGTGNFRLWQKRVKDLLA*QGLLKVLRDSKSNNTEALDWEEL*ERTATTIR 136

Query: 65  LCVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRY 108
           LC+ D+ + H ++L    +VW  LESQYM K+L +KL + Q+ Y
Sbjct: 135 LCLVDEFLYHMMELAFPGEVWKKLESQYMLKSLTNKLYLMQKLY 4


>AW760164 similar to GP|11994422|dbj oxidoreductase  short-chain
           dehydrogenase/reductase family-like protein {Arabidopsis
           thaliana}, partial (9%)
          Length = 428

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
 Frame = +3

Query: 5   GGAKFEVTRLNGTRNFGLWQMRVKDLLAQQGLHKALRDK-SLDIAIVDWNE--MKKKAAG 61
           G AK+EV +  G  +FGL  ++++ LL QQGL +AL  +  L+  + D ++  + +KA  
Sbjct: 78  GSAKYEVEKFTGQNDFGLC*LKMRALLVQQGLVEALDGEIKLEKMMADGDKKALLQKAYN 257

Query: 62  LIKLCVSDDVMNHTLDLTTLNDVWDTLE 89
            I L + D V+      TT   VW  LE
Sbjct: 258 AIILSLGDKVLRQVSKETTAVGVWSKLE 341


>TC205962 weakly similar to UP|Q41419 (Q41419) Sucrolytic enzyme/ferredoxin
           homolog protein, partial (67%)
          Length = 1416

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 21/69 (30%), Positives = 29/69 (41%), Gaps = 2/69 (2%)
 Frame = +2

Query: 57  KKAAGLIKLCVSDD--VMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLKMQE 114
           K A  +I  C   D  +M H     T NDV D L+       ++ +LL  Q   S+   +
Sbjct: 626 KYAGNVIIYCPGADGKIMGHWYGYVTPNDVSDLLDQHIAKGEVIKRLLRGQMGPSVAEDK 805

Query: 115 GGDLQDHVN 123
           G D Q   N
Sbjct: 806 GADDQKVAN 832


>TC217943 similar to UP|O65645 (O65645) ATM-like protein, partial (9%)
          Length = 1451

 Score = 26.9 bits (58), Expect = 4.1
 Identities = 21/62 (33%), Positives = 29/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 37  HKALRDKSLDIAIVDWNEMKKKA-AGLIKLCVSDDVMNHTLDLTTLNDVWDTLESQYMSK 95
           H A  D+  D+ I  + E   +A +G I      D+     +  T N V D + SQYM K
Sbjct: 258 HCARNDREADLPITYFKEQLNQAISGQISPEAVVDLRLQAYNEITKNLVNDNIFSQYMYK 437

Query: 96  TL 97
           TL
Sbjct: 438 TL 443


>BG508014 GP|15128578|db prolactin receptor {Paralichthys olivaceus}, partial
           (2%)
          Length = 450

 Score = 26.6 bits (57), Expect = 5.3
 Identities = 23/114 (20%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
 Frame = +1

Query: 19  NFGLWQMRVKDLLAQQGLHKALRDKSLD--IAIVD-------------WNEMKKKAAGLI 63
           N+ LW  +V+ ++  + LH  L +  +    A+V              W E  +     +
Sbjct: 103 NYLLWLQQVELVIKSRHLHHFLVNPLIPKKYALVKDCDSDTTTEVYHGWKEQDQFFLAWL 282

Query: 64  KLCVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLKMQEGGD 117
           +  +  D++ H +   +   +WD L+  + S T   +  V+Q R  L+    G+
Sbjct: 283 RSTIYGDMLTHVIGCKSSWQLWDRLQLHFQSLT---RARVRQLRNELRCLSHGN 435


>TC232483 UP|O82687 (O82687) Tyrosine phosphatase 1, complete
          Length = 1412

 Score = 26.2 bits (56), Expect = 6.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 106 RRYSLKMQEGGDLQDHVNAFNNILADLTRLGVKVD 140
           RRY +++Q    L DHV +   +L ++  LG  VD
Sbjct: 315 RRYPVRLQVCELLSDHVRSVELLLQNVEGLGAVVD 211


>TC207326 homologue to UP|Q9FS24 (Q9FS24) Neoxanthin cleavage enzyme, partial
           (63%)
          Length = 1509

 Score = 25.8 bits (55), Expect = 9.1
 Identities = 14/62 (22%), Positives = 27/62 (42%)
 Frame = -1

Query: 66  CVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLKMQEGGDLQDHVNAF 125
           C   ++M   +DL             +    + DK+L K   +SLKM+  G +Q+ +   
Sbjct: 789 CSDSEIMGFLVDLPV-----------FKFSLISDKMLFKLSSHSLKMESAGVMQEPMTTI 643

Query: 126 NN 127
           ++
Sbjct: 642 SS 637


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.321    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,657,177
Number of Sequences: 63676
Number of extensions: 54911
Number of successful extensions: 226
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of query: 157
length of database: 12,639,632
effective HSP length: 89
effective length of query: 68
effective length of database: 6,972,468
effective search space: 474127824
effective search space used: 474127824
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)