TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0490.3
         (1199 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete             583  e-166
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co...   583  e-166
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag...   153  5e-37
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro...   141  2e-33
CO982036                                                              140  3e-33
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ...   139  6e-33
TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei...   139  1e-32
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi...   132  7e-31
BU548243                                                              129  6e-30
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti...   129  8e-30
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V...   129  8e-30
TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, ...   125  1e-28
TC232995                                                              124  2e-28
CO983516                                                              123  6e-28
TC221132 weakly similar to UP|O23529 (O23529) RETROTRANSPOSON li...    77  6e-28
TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotr...   117  4e-27
AI855899 similar to GP|2244960|emb| retrotransposon like protein...   119  6e-27
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)       117  2e-26
BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Ara...   116  5e-26
BU549979                                                              112  1e-24

>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
          Length = 4731

 Score =  583 bits (1504), Expect = e-166
 Identities = 375/1078 (34%), Positives = 546/1078 (49%), Gaps = 33/1078 (3%)
 Frame = +1

Query: 145  PAPTDIAAAMHTMSLTPPDTPWYMDTGASSHTAASQGTL-------TSYSNLSHLNQKLI 197
            P    ++  +HT         WY+D+G S H    +  L       TSY      ++  I
Sbjct: 1621 PKHKAVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKI 1800

Query: 198  VGSGQGIPIQGSGYTSIPTPHKPLALNHVLHTPRIIKNLISVRQLTTDNNVSVSFDPFGF 257
            +G G+ +      +  +P+      LN VL    +  NLIS+ QL  D   +V+F     
Sbjct: 1801 IGMGKLV------HDGLPS------LNKVLLVKGLTANLISISQLC-DEGFNVNFTKSEC 1941

Query: 258  SVSDFKTGMPLLRCNSLGDLY---PVTRSSPFAGLASS-----VWHNRLGHPASSALNHL 309
             V++ K+ + +    S  + Y   P   S     L+S      +WH R GH       HL
Sbjct: 1942 LVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHL------HL 2103

Query: 310  RNNKLIFCEPS---------RSSSVCDSCVLGKHVRLPFSS-SAIITLRPFDILHSDLW- 358
            R  K I  + +             +C  C +GK V++         T R  ++LH DL  
Sbjct: 2104 RGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMG 2283

Query: 359  TSPVLSTAGHRYYVLFLDDHTDFLWTFPISKKSQVYETFTTLATLIKTQFSANIKCLQCD 418
               V S  G RY  + +DD + F W   I +KS+ +E F  L+  ++ +    IK ++ D
Sbjct: 2284 PMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQREKDCVIKRIRSD 2463

Query: 419  NGREYDNDSFHRYCDANGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHSSVPPSFW 478
            +GRE++N  F  +C + G+   FS   T  QNG  ERK RT+    R +L    +P + W
Sbjct: 2464 HGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLW 2643

Query: 479  HHALQMATYLLNILPRKTLQNDSPTQLLY---HRDPSYSHLRVFGCLCFPLFPSATINKL 535
              A+  A Y+ N   R TL+  +PT L      R PS  H  +FG  C+ L       K+
Sbjct: 2644 AEAMNTACYIHN---RVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKM 2814

Query: 536  QPRSTPCVFLGYPMNHRGYKCYDLSHRKILISRHVIFDETRFPFADLSLTPAPSYECFTE 595
             P+S   +FLGY  N R Y+ ++   R ++ S +V+ D+         L+PA   +   E
Sbjct: 2815 DPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDD---------LSPARKKDV-EE 2964

Query: 596  DLPPSLIHHWQTVSSRPPDPPVQPSSPTDSSPPLSALVSPTASPSPLPLPPVPP----AP 651
            D+  S  +      S       + +  +DS+   S +  P    S       P       
Sbjct: 2965 DVRTSGDNVADAAKSG------ENAENSDSATDESNINQPDKRSSTRIQKMHPKELIIGD 3126

Query: 652  PVRTMTTRSMHGISKPKKPFSLSVSIDDPSISPLPHNPKQALSDPNWKSAMQSEFNALIR 711
            P R +TTRS          F   +          P N K+AL+D  W +AMQ E     R
Sbjct: 3127 PNRGVTTRSREVEIVSNSCFVSKIE---------PKNVKEALTDEFWINAMQEELEQFKR 3279

Query: 712  SNTWELVPRPCDVNVIRCMWIFRHKKQSNGLFERYKARLVGDGRSQIAGVDCDETFSPVV 771
            +  WELVPRP   NVI   WIF++K    G+  R KARLV  G +QI GVD DETF+PV 
Sbjct: 3280 NEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVA 3459

Query: 772  KPATIRTVLSIALSRSWPIHQLDVQNAFLHGDLHETIYMHHPLGFRDPHHPDYVCRLKKS 831
            +  +IR +L +A    + ++Q+DV++AFL+G L+E +Y+  P GF DP HPD+V RLKK+
Sbjct: 3460 RLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKA 3639

Query: 832  LYGLKQAPRAWYQRFADYVSSIGFRHSTSDHSLFIFRQGSDIAYILLYVDDIILVASSHD 891
            LYGLKQAPRAWY+R  ++++  G+R    D +LF+ +   ++    +YVDDI+    S++
Sbjct: 3640 LYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNE 3819

Query: 892  LRKSFMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQSTYATEIIARAGMASCNPSA 951
            + + F+  + SEF M  +G L+YFLG+ V +    +FLSQS YA  I+ + GM + +   
Sbjct: 3820 MLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKR 3999

Query: 952  TPVDTKQKLSSSSGTPCEDASLYRSLDGALQYLTFTRPDISYAVQQVCLHMHAPHTKHML 1011
            TP  T  KLS        D SLYRS+ G+L YLT +RPDI+YAV     +   P   H+ 
Sbjct: 4000 TPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLT 4179

Query: 1012 ALKRVLRYVRGTLTYGLHLYPSPVETLVSYTDADWGGCPDTRRSTSGYCVFLGDNLISWS 1071
             +KR+L+YV GT  YG+         LV Y DADW G  D R+STSG C +LG+NLISW 
Sbjct: 4180 QVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWF 4359

Query: 1072 SKRQPTLSRSSAEAEYRGVANVVSESCWIRNLLLELHFPLSQATLVHCDNVSAIYLSGNP 1131
            SK+Q  +S S+AEAEY    +  S+  W++ +L E +      TL +CDN+SAI +S NP
Sbjct: 4360 SKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTL-YCDNMSAINISKNP 4536

Query: 1132 VHHQRTKHIEMDIHFVREKVVRGQARVLHVPSRHQIADIFTKGLPRLLFDDFRSSLSV 1189
            V H RTKHI++  H++R+ V      + HV +  QIADIFTK L    F+  R  L +
Sbjct: 4537 VQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKLGI 4710


>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
          Length = 4734

 Score =  583 bits (1502), Expect = e-166
 Identities = 375/1071 (35%), Positives = 546/1071 (50%), Gaps = 31/1071 (2%)
 Frame = +1

Query: 150  IAAAMHTMSLTPPDTPWYMDTGASSHTAASQGTLTSYSNLSHLNQKLIVGSGQGIPIQGS 209
            ++  +HT         WY+D+G S H    +  L +    S     +  G G    I G 
Sbjct: 1639 VSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCS--TSYVTFGDGSKGKITGM 1812

Query: 210  G---YTSIPTPHKPLALNHVLHTPRIIKNLISVRQLTTDNNVSVSFDPFGFSVSDFKTGM 266
            G   +  +P+      LN VL    +  NLIS+ QL  D   +V+F      V++ K+ +
Sbjct: 1813 GKLVHDGLPS------LNKVLLVKGLTANLISISQLC-DEGFNVNFTKSECLVTNEKSEV 1971

Query: 267  PLLRCNSLGDLY---PVTRSSPFAGLASS-----VWHNRLGHPASSALNHLRNNKLIFCE 318
             +    S  + Y   P   S     L S      +WH R GH       HLR  K I  +
Sbjct: 1972 LMKGSRSKDNCYLWTPQETSYSSTCLFSKEDEVKIWHQRFGHL------HLRGMKKIIDK 2133

Query: 319  PS---------RSSSVCDSCVLGKHVRLPFSS-SAIITLRPFDILHSDLW-TSPVLSTAG 367
             +             +C  C +GK V++         T R  ++LH DL     V S  G
Sbjct: 2134 GAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGG 2313

Query: 368  HRYYVLFLDDHTDFLWTFPISKKSQVYETFTTLATLIKTQFSANIKCLQCDNGREYDNDS 427
             RY  + +DD + F W   I +KS  +E F  L+  ++ +    IK ++ D+GRE++N  
Sbjct: 2314 KRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSK 2493

Query: 428  FHRYCDANGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHSSVPPSFWHHALQMATY 487
            F  +C + G+   FS   T  QNG  ERK RT+    R +L    +P + W  A+  A Y
Sbjct: 2494 FTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACY 2673

Query: 488  LLNILPRKTLQNDSPTQLLY---HRDPSYSHLRVFGCLCFPLFPSATINKLQPRSTPCVF 544
            + N   R TL+  +PT L      R P+  H  +FG  C+ L       K+ P+S   +F
Sbjct: 2674 IHN---RVTLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIF 2844

Query: 545  LGYPMNHRGYKCYDLSHRKILISRHVIFDETRFPFADLSLTPAPSYECFTEDLPPSLIHH 604
            LGY  N R Y+ ++   R ++ S +V+ D+         LTPA   +   ED+  S  + 
Sbjct: 2845 LGYSTNSRAYRVFNSRTRTVMESINVVVDD---------LTPARKKDV-EEDVRTSGDNV 2994

Query: 605  WQTVSSRPPDPPVQPSSPTDSSPPLSALVSPTASPSPLPLPPVPP-----APPVRTMTTR 659
              T  S       + +  +DS+     +  P   PS + +  + P       P R +TTR
Sbjct: 2995 ADTAKS------AENAENSDSATDEPNINQPDKRPS-IRIQKMHPKELIIGDPNRGVTTR 3153

Query: 660  SMHGISKPKKPFSLSVSIDDPSISPL-PHNPKQALSDPNWKSAMQSEFNALIRSNTWELV 718
            S            + +  +   +S + P N K+AL+D  W +AMQ E     R+  WELV
Sbjct: 3154 SRE----------IEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELV 3303

Query: 719  PRPCDVNVIRCMWIFRHKKQSNGLFERYKARLVGDGRSQIAGVDCDETFSPVVKPATIRT 778
            PRP   NVI   WIF++K    G+  R KARLV  G +QI GVD DETF+PV +  +IR 
Sbjct: 3304 PRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRL 3483

Query: 779  VLSIALSRSWPIHQLDVQNAFLHGDLHETIYMHHPLGFRDPHHPDYVCRLKKSLYGLKQA 838
            +L +A    + ++Q+DV++AFL+G L+E  Y+  P GF DP HPD+V RLKK+LYGLKQA
Sbjct: 3484 LLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQA 3663

Query: 839  PRAWYQRFADYVSSIGFRHSTSDHSLFIFRQGSDIAYILLYVDDIILVASSHDLRKSFMA 898
            PRAWY+R  ++++  G+R    D +LF+ +   ++    +YVDDI+    S+++ + F+ 
Sbjct: 3664 PRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQ 3843

Query: 899  LLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQSTYATEIIARAGMASCNPSATPVDTKQ 958
             + SEF M  +G L+YFLG+ V +    +FLSQS YA  I+ + GM + +   TP  T  
Sbjct: 3844 QMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHL 4023

Query: 959  KLSSSSGTPCEDASLYRSLDGALQYLTFTRPDISYAVQQVCLHMHAPHTKHMLALKRVLR 1018
            KLS        D SLYRS+ G+L YLT +RPDI+YAV     +   P   H+  +KR+L+
Sbjct: 4024 KLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILK 4203

Query: 1019 YVRGTLTYGLHLYPSPVETLVSYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTL 1078
            YV GT  YG+         LV Y DADW G  D R+STSG C +LG NLISW SK+Q  +
Sbjct: 4204 YVNGTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQNCV 4383

Query: 1079 SRSSAEAEYRGVANVVSESCWIRNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTK 1138
            S S+AEAEY    +  S+  W++ +L E +      TL +CDN+SAI +S NPV H RTK
Sbjct: 4384 SLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTL-YCDNMSAINISKNPVQHSRTK 4560

Query: 1139 HIEMDIHFVREKVVRGQARVLHVPSRHQIADIFTKGLPRLLFDDFRSSLSV 1189
            HI++  H++R+ V      + HV +  QIADIFTK L    F+  R  L +
Sbjct: 4561 HIDIRHHYIRDLVDDKVITLEHVDTEEQIADIFTKALDANQFEKLRGKLGI 4713


>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
            (30%)
          Length = 687

 Score =  153 bits (386), Expect = 5e-37
 Identities = 72/138 (52%), Positives = 93/138 (67%)
 Frame = +2

Query: 1038 LVSYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSES 1097
            L  Y DADW GCP  RRSTSGYCVF+G NL+SW SK+Q  ++RSSAEAEYR +A V  E 
Sbjct: 17   LSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCEL 196

Query: 1098 CWIRNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVVRGQAR 1157
             WI+  L EL F       ++CDN +A++++ NPV H+RTKHIE+D HF+REK++  +  
Sbjct: 197  MWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEIV 376

Query: 1158 VLHVPSRHQIADIFTKGL 1175
               + S  Q  DI TK L
Sbjct: 377  TEFIGSNDQPVDILTKSL 430


>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
            (7%)
          Length = 804

 Score =  141 bits (355), Expect = 2e-33
 Identities = 80/222 (36%), Positives = 125/222 (56%), Gaps = 4/222 (1%)
 Frame = +1

Query: 970  DASLYRSLDGALQYLTFTRPDISYAVQQVCLHMHAPHTKHMLALKRVLRYVRGTLTYGLH 1029
            D + +R L G+L+YL  +RP+I +AV  +   M  P   HM A KRVLR ++GT+  G+ 
Sbjct: 10   DVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGV- 186

Query: 1030 LYPSPVET----LVSYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEA 1085
            L+P   ++    L+ YTD+DW   P+  +ST GY     D  ++ SSK+Q  ++ S+ EA
Sbjct: 187  LFPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEA 366

Query: 1086 EYRGVANVVSESCWIRNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIH 1145
            EY   +    ++ W+ NLL EL     +   +  DN SAI L+ +P  H R+KHIE+  H
Sbjct: 367  EYVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFH 546

Query: 1146 FVREKVVRGQARVLHVPSRHQIADIFTKGLPRLLFDDFRSSL 1187
            ++R++V +G   V +  +  Q+AD+ TK +    F    S L
Sbjct: 547  YIRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672


>CO982036 
          Length = 674

 Score =  140 bits (353), Expect = 3e-33
 Identities = 87/204 (42%), Positives = 114/204 (55%), Gaps = 3/204 (1%)
 Frame = -2

Query: 875  YILLYVDDIILVASSHDLRKSFMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQSTY 934
            Y+L+YVD II+  SS  L ++  + L S F +K LG L YF+ I V +    L  S  T 
Sbjct: 649  YLLVYVD-IIITGSSCTLIQNLTSKLNSSFPLKLLGKLDYFVEIEV-KSMPDLLFSLRTS 476

Query: 935  ATEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDASLYRSLDGALQYLTFTRPDISYA 994
              EI  R       P ++P+ T  KLS S        + YRS+ GALQY T  RP+IS+A
Sbjct: 475  IFEIFCRKPR*QAQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEISFA 296

Query: 995  VQQVCLHMHAPHTKHMLALKRVLRYVRGTLTYGLHLYP---SPVETLVSYTDADWGGCPD 1051
            V +VC  M  P   H   +KR+LRY++G+L+YGL L P   S    +  + DADW    D
Sbjct: 295  VNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWASAVD 116

Query: 1052 TRRSTSGYCVFLGDNLISWSSKRQ 1075
             +RSTSG  VFLG NLISW   +Q
Sbjct: 115  DKRSTSGAAVFLGPNLISWWXXKQ 44


>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
           (japonica cultivar-group)}, partial (10%)
          Length = 463

 Score =  139 bits (351), Expect = 6e-33
 Identities = 65/150 (43%), Positives = 101/150 (67%)
 Frame = -3

Query: 701 AMQSEFNALIRSNTWELVPRPCDVNVIRCMWIFRHKKQSNGLFERYKARLVGDGRSQIAG 760
           AMQ E N   R+N W+LV +P +  VI   W+FR+K   +G+  R KARLV  G +Q  G
Sbjct: 458 AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279

Query: 761 VDCDETFSPVVKPATIRTVLSIALSRSWPIHQLDVQNAFLHGDLHETIYMHHPLGFRDPH 820
           +D +ET++PV +   IR +L+     ++ ++Q+DV++AFL+G + E +Y+  P GF  P 
Sbjct: 278 IDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPD 99

Query: 821 HPDYVCRLKKSLYGLKQAPRAWYQRFADYV 850
            P +V +L+K+LYGLKQAPRAWY+R ++++
Sbjct: 98  KPTHVYKLQKALYGLKQAPRAWYERISNFL 9


>TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
           (Fragment), partial (28%)
          Length = 865

 Score =  139 bits (349), Expect = 1e-32
 Identities = 92/283 (32%), Positives = 139/283 (48%), Gaps = 4/283 (1%)
 Frame = +2

Query: 196 LIVGSGQGIPIQGSGYTSIPTPHKPLALNHVLHTPRIIKNLISVRQLTTDNNVSVSFDPF 255
           + +  G  +   G G+ S   P   L+LN V+       N+ S+ QLT   N SV+FD  
Sbjct: 20  ITLADGSRVVATGIGHVS---PTSSLSLNSVVFILGCPFNITSLSQLTRFRNCSVTFDAN 190

Query: 256 GFSVSDFKTGMPL---LRCNSLGDLYPVTRSSPFAGLASSVWHNRLGHPASSALNHLRNN 312
            F + +  TG  +   +  + L  L P       A  +  + H RLGHP      HL   
Sbjct: 191 SFVIQECGTGWTIGVGIESHGLYYLKPNLSWVCSAVTSPKLLHERLGHP------HLSKL 352

Query: 313 KLIFCEPSRSSSV-CDSCVLGKHVRLPFSSSAIITLRPFDILHSDLWTSPVLSTAGHRYY 371
           K++     +   + C+SC LGKHVR            PF ++H D+W    +S+  +RY+
Sbjct: 353 KIMVPSLEKIKDLFCESCQLGKHVRSSXRHVESRVDSPFLVIHXDIWGPNRVSSMSYRYF 532

Query: 372 VLFLDDHTDFLWTFPISKKSQVYETFTTLATLIKTQFSANIKCLQCDNGREYDNDSFHRY 431
           V F+D+ +     F + ++S++  +F T    IKTQF   IK L+ DN +EY +     +
Sbjct: 533 VTFIDEFSQCTRVFLMKERSEIL-SFLTSVNKIKTQFGKTIKILRSDNAKEYFSSVISPF 709

Query: 432 CDANGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHSSVP 474
             A G++ +FSCPHT  QN  AERK R +    RTLL H++ P
Sbjct: 710 XSAQGILHQFSCPHTPQQNDIAERKNRHLVETARTLLLHANEP 838


>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
           partial (34%)
          Length = 407

 Score =  132 bits (333), Expect = 7e-31
 Identities = 64/133 (48%), Positives = 84/133 (63%)
 Frame = -2

Query: 718 VPRPCDVNVIRCMWIFRHKKQSNGLFERYKARLVGDGRSQIAGVDCDETFSPVVKPATIR 777
           VP P     + C W++  K    G  +R KARLV  G +Q+ G+D  +TFSPV K  T+R
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227

Query: 778 TVLSIALSRSWPIHQLDVQNAFLHGDLHETIYMHHPLGFRDPHHPDYVCRLKKSLYGLKQ 837
             L++A    WP+HQLD++NAFLHGDL E IYM  P GF        VC+L +SLYGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47

Query: 838 APRAWYQRFADYV 850
           +PRAW+ +F+  V
Sbjct: 46  SPRAWFGKFSHVV 8


>BU548243 
          Length = 599

 Score =  129 bits (325), Expect = 6e-30
 Identities = 66/147 (44%), Positives = 91/147 (61%)
 Frame = -1

Query: 1043 DADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWIRN 1102
            DA W    D  RST G  +FLG NLISW S++Q   ++SS EAEYR +A   +E  WI+ 
Sbjct: 587  DAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELTWIQA 408

Query: 1103 LLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVVRGQARVLHVP 1162
            LL+EL  P +   ++ CDN SA+ ++ N V H RTKH+E+D+ FV EKV+  Q ++ H+P
Sbjct: 407  LLMELQIPFTPPVIL-CDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQIFHIP 231

Query: 1163 SRHQIADIFTKGLPRLLFDDFRSSLSV 1189
            +  Q A I TK L    F   +S L+V
Sbjct: 230  ALDQWAGILTKPLSSARFTFLKSKLTV 150


>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
          Length = 558

 Score =  129 bits (324), Expect = 8e-30
 Identities = 74/180 (41%), Positives = 101/180 (56%), Gaps = 1/180 (0%)
 Frame = +1

Query: 740 NGLFERYKARLVGDGRSQIAGVDCDETFSPVVKPATIRTVLSIALSRSWPIHQLDVQNAF 799
           +G  +++KARLV    +Q+ G D   TFSPV K A +  + S+A+   WP+  LD +NAF
Sbjct: 25  SGTIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAF 204

Query: 800 LHGDLHETIYMHHPLGF-RDPHHPDYVCRLKKSLYGLKQAPRAWYQRFADYVSSIGFRHS 858
           LHG L E +YM  PLGF       + VC+L +S YGLKQ+PRAW   F    ++I +   
Sbjct: 205 LHGYLEEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAW--PFLYCGAAIWYDSH 378

Query: 859 TSDHSLFIFRQGSDIAYILLYVDDIILVASSHDLRKSFMALLASEFAMKDLGPLSYFLGI 918
            +DHS+F         Y+++YVDDI +  S           L  +F  KDLG L YFLGI
Sbjct: 379 EADHSVFYCHSPQGCIYLIVYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRYFLGI 558


>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
           vinifera}, partial (34%)
          Length = 409

 Score =  129 bits (324), Expect = 8e-30
 Identities = 60/129 (46%), Positives = 80/129 (61%)
 Frame = +3

Query: 685 LPHNPKQALSDPNWKSAMQSEFNALIRSNTWELVPRPCDVNVIRCMWIFRHKKQSNGLFE 744
           +P   ++AL  P W+ AM  E  AL  + TWELVP P     + C W++  K   NG  +
Sbjct: 18  VPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGPNGKVD 197

Query: 745 RYKARLVGDGRSQIAGVDCDETFSPVVKPATIRTVLSIALSRSWPIHQLDVQNAFLHGDL 804
           R KARLV  G +Q+ G++  +TFSPV    T+R  L++A  R WP+HQLD++NAFLHGDL
Sbjct: 198 RLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAFLHGDL 377

Query: 805 HETIYMHHP 813
            E IYM  P
Sbjct: 378 EEDIYMEQP 404


>TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, partial (16%)
          Length = 662

 Score =  125 bits (313), Expect = 1e-28
 Identities = 77/195 (39%), Positives = 113/195 (57%), Gaps = 7/195 (3%)
 Frame = +3

Query: 1007 TKHMLALKRVLRYVRGTLTYGLHLYPSPVETLVSYTDADWGGCPDTRRSTSGYCVFLGDN 1066
            T+ + A  RVL+Y++G    GL         ++ ++DADW  C D+ +S + YC FLG +
Sbjct: 3    TRPLCAATRVLKYLKGCPRKGLSFSRESPIQILGFSDADWATCIDSSKSITWYCFFLGSS 182

Query: 1067 LISWSSKRQPTLSR--SSAEAEYRGVANVVSESCWIRNLLLELHFPLSQATLVHCDNVSA 1124
            LISW +K+Q T+SR  SS+EA+YR + +   E  W+  LL +LH      TL++CDN SA
Sbjct: 183  LISWKAKKQNTVSRSSSSSEAKYRALTSTTCELQWLTYLLKDLH-----VTLIYCDNQSA 347

Query: 1125 IY-LSGNPVHHQRTKHIEMDIHFVREKVVRGQAR-VLHVPSRHQIADIFTKGLPRLLFDD 1182
            +  L    ++H +   +E+D H VREK  +G    +L V S +Q+ADIFTK L   LF  
Sbjct: 348  LQ*LPIKVIYHGQ---LEIDCHIVREKTQQGLMHCLLPVSSSNQLADIFTKALSPKLFSS 518

Query: 1183 FRSSLSVGE---PPA 1194
              S L + +   PPA
Sbjct: 519  NLSKLGLSDIFLPPA 563


>TC232995 
          Length = 1009

 Score =  124 bits (311), Expect = 2e-28
 Identities = 66/170 (38%), Positives = 96/170 (55%)
 Frame = +2

Query: 810 MHHPLGFRDPHHPDYVCRLKKSLYGLKQAPRAWYQRFADYVSSIGFRHSTSDHSLFIFRQ 869
           +  P GF     P++V +L+K+LYGLKQAPRAWY+R ++++    F     D +LFI R+
Sbjct: 2   VEQPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRK 181

Query: 870 GSDIAYILLYVDDIILVASSHDLRKSFMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFL 929
            +DI  + +YVDDII  +++  L K F   + SEF M  +G L YFLG+ + +   G+F+
Sbjct: 182 HNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFI 361

Query: 930 SQSTYATEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDASLYRSLDG 979
           +QS Y  E+I R GM S    +TP+ T   L         D   YR   G
Sbjct: 362 NQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIG 511


>CO983516 
          Length = 724

 Score =  123 bits (308), Expect = 6e-28
 Identities = 55/122 (45%), Positives = 84/122 (68%)
 Frame = +2

Query: 763 CDETFSPVVKPATIRTVLSIALSRSWPIHQLDVQNAFLHGDLHETIYMHHPLGFRDPHHP 822
           CD+ F PV +  +IR +L +A    + ++Q+DV++AFL+G L+E +Y+  P GF DP HP
Sbjct: 353 CDKEFHPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFIDPTHP 532

Query: 823 DYVCRLKKSLYGLKQAPRAWYQRFADYVSSIGFRHSTSDHSLFIFRQGSDIAYILLYVDD 882
           D+V RLKK+LYGLKQAPRAWY+R  + ++  G+R    D +LF+ +   ++    +YVDD
Sbjct: 533 DHVYRLKKALYGLKQAPRAWYERLTELLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDD 712

Query: 883 II 884
           I+
Sbjct: 713 IV 718


>TC221132 weakly similar to UP|O23529 (O23529) RETROTRANSPOSON like protein,
            partial (5%)
          Length = 799

 Score = 77.0 bits (188), Expect(3) = 6e-28
 Identities = 39/96 (40%), Positives = 56/96 (57%)
 Frame = +1

Query: 1002 MHAPHTKHMLALKRVLRYVRGTLTYGLHLYPSPVETLVSYTDADWGGCPDTRRSTSGYCV 1061
            M  P    M A KRVLRY++GT+ +GL L  SP + L ++ DA+W       RST  Y V
Sbjct: 142  MKDPTKIRMQATKRVLRYLKGTIDFGLQLRSSPDQHLRAFYDANWVDNTSDIRSTGAYVV 321

Query: 1062 FLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSES 1097
            + G ++ISWS K+Q  + +SS + EY  +   + ES
Sbjct: 322  YFGLSVISWSCKKQSIIDKSSTKVEYHKITTTIIES 429



 Score = 54.7 bits (130), Expect(3) = 6e-28
 Identities = 27/55 (49%), Positives = 34/55 (61%)
 Frame = +2

Query: 1121 NVSAIYLSGNPVHHQRTKHIEMDIHFVREKVVRGQARVLHVPSRHQIADIFTKGL 1175
            N+ A+YL  NPV H   KH+ +D  FV++ V   Q RV HVPS H   D+FTK L
Sbjct: 467  NIGAMYLCANPVFHLCMKHLTIDHLFVQDLVANKQLRVSHVPSCH*HVDLFTKAL 631



 Score = 32.3 bits (72), Expect(3) = 6e-28
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 962  SSSGTPCEDASLYRSLDGALQYLTFTRPDISYAVQQVCLH 1001
            +S   P  D  +Y  L  +LQYL+ T PDI++ + ++ +H
Sbjct: 24   ASGDVPSCDGIVYCQLVDSLQYLSLTCPDIAFPINKLSVH 143


>TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotransposon
            Hopscotch polyprotein, partial (7%)
          Length = 1446

 Score =  117 bits (293), Expect(2) = 4e-27
 Identities = 55/109 (50%), Positives = 74/109 (67%)
 Frame = +2

Query: 1043 DADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWIRN 1102
            DA+W   P  R ST GYCV +G+NL+ W S +   ++RSSAEAEY+ +     E  WI+ 
Sbjct: 8    DANWAVSPIDRGSTLGYCVSIGENLVLWKSNK*NVVARSSAEAEYKAMTVATCELIWIKQ 187

Query: 1103 LLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKV 1151
            LL EL F  +Q   + CDN +A++++ NPV H+RTKHIE+D HFVREKV
Sbjct: 188  LLQELKFGSTQQMKLCCDNQAALHIASNPVFHERTKHIEIDCHFVREKV 334



 Score = 23.9 bits (50), Expect(2) = 4e-27
 Identities = 16/38 (42%), Positives = 19/38 (49%)
 Frame = +3

Query: 1161 VPSRHQIADIFTKGLPRLLFDDFRSSLSVGEPPASTAG 1198
            V S  Q+A+IFTK L      +  S L   E  AST G
Sbjct: 363  VSSNDQLANIFTKSLRGPRIQNICSKLGAFELYAST*G 476


>AI855899 similar to GP|2244960|emb| retrotransposon like protein {Arabidopsis
            thaliana}, partial (18%)
          Length = 418

 Score =  119 bits (299), Expect = 6e-27
 Identities = 62/135 (45%), Positives = 84/135 (61%), Gaps = 3/135 (2%)
 Frame = +1

Query: 944  MASCNPSATPVDTKQKLSSSSGTPCEDASLYRSLDGALQYLTFTRPDISYAVQQVCLHMH 1003
            M  CN  +TP+ +  KLS        +A  YR + GALQY+T TRP+I+Y V +V   M 
Sbjct: 13   MLDCNGISTPMVSSYKLSKFGSELLPNAHQYRDIVGALQYVTLTRPNIAYNVNKVSEFMS 192

Query: 1004 APHTKHMLALKRVLRYVRGTLTYGLHLYPSPVETLVS---YTDADWGGCPDTRRSTSGYC 1060
            +P   + L +KR+LRY+ GT+T GL L P+ ++  +S   Y D DWG  P   RSTSG C
Sbjct: 193  SPLQSY*LTVKRILRYLSGTVTQGLLLQPAHMDAKISLRAYNDLDWGSDPAEMRSTSGSC 372

Query: 1061 VFLGDNLISWSSKRQ 1075
            +F G NLI+WSSK+Q
Sbjct: 373  IFSGSNLIAWSSKKQ 417


>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
          Length = 493

 Score =  117 bits (294), Expect = 2e-26
 Identities = 58/139 (41%), Positives = 86/139 (61%)
 Frame = +3

Query: 1051 DTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWIRNLLLELHFP 1110
            D R+ST+G+  F+GD   +W SK+QP ++ S+ EAEY    + V  + W+RNLL EL  P
Sbjct: 9    DDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKMP 188

Query: 1111 LSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVVRGQARVLHVPSRHQIADI 1170
              +   +  DN SA+ L+ NPV H+++KHI+   HF+RE + + + ++ +V S+ Q ADI
Sbjct: 189  QEEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAADI 368

Query: 1171 FTKGLPRLLFDDFRSSLSV 1189
            FTK L    F   RS L V
Sbjct: 369  FTKPLKLETFVKLRSMLGV 425


>BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Arabidopsis
           thaliana}, partial (18%)
          Length = 421

 Score =  116 bits (291), Expect = 5e-26
 Identities = 58/138 (42%), Positives = 84/138 (60%)
 Frame = -2

Query: 830 KSLYGLKQAPRAWYQRFADYVSSIGFRHSTSDHSLFIFRQGSDIAYILLYVDDIILVASS 889
           KSLYGLKQA R WY++  + +   G+  S SD+SLF   +G+    +L+YVDDIIL   S
Sbjct: 420 KSLYGLKQASRKWYEKLTNLLLKEGYIQSISDYSLFTLTKGNTFTALLVYVDDIILAGDS 241

Query: 890 HDLRKSFMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQSTYATEIIARAGMASCNP 949
            D       +L   F +K+LG L YFLG+ V     G+ +SQ  Y  +++  +G+  C P
Sbjct: 240 IDEFDRIKNVLDLAFKIKNLGKLKYFLGLEVAHSRLGITISQRKYCLDLLKDSGLLGCKP 61

Query: 950 SATPVDTKQKLSSSSGTP 967
           ++TP+DT  KL S++GTP
Sbjct: 60  ASTPLDTSIKLHSAAGTP 7


>BU549979 
          Length = 615

 Score =  112 bits (280), Expect = 1e-24
 Identities = 57/180 (31%), Positives = 97/180 (53%), Gaps = 2/180 (1%)
 Frame = -1

Query: 1005 PHTKHMLALKRVLRYVRGTLTYGLHLYPSPVETLVSYTDADWGGCPDTRRSTSGYCVFLG 1064
            P   H    K+V+RY++GT  Y L    +    ++ Y+D+D+ GC D+RRSTSGY   L 
Sbjct: 591  PGIDHWKTAKKVMRYLQGTKDYMLMYKQTNCLEVIGYSDSDFAGCVDSRRSTSGYIFMLA 412

Query: 1065 DNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWIRNLLLELHF--PLSQATLVHCDNV 1122
            D ++SW S +Q  ++ S+ E E+       S   W+++ +  L     +S+   ++CDN 
Sbjct: 411  DGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVVDSISRPLKLYCDNF 232

Query: 1123 SAIYLSGNPVHHQRTKHIEMDIHFVREKVVRGQARVLHVPSRHQIADIFTKGLPRLLFDD 1182
            +A++++ N     R+KHI++    +RE+V   +  + HV +   I D  TKG+    F D
Sbjct: 231  AAVFMAKNNKSGNRSKHIDIKYLVIRERVKEKKVVIEHVNTELMIVDPLTKGMTPKNFKD 52


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.319    0.134    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,761,334
Number of Sequences: 63676
Number of extensions: 1452628
Number of successful extensions: 29919
Number of sequences better than 10.0: 1518
Number of HSP's better than 10.0 without gapping: 13422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21565
length of query: 1199
length of database: 12,639,632
effective HSP length: 108
effective length of query: 1091
effective length of database: 5,762,624
effective search space: 6287022784
effective search space used: 6287022784
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)