Lotus
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0476b.8
         (997 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC224645 homologue to UP|Q41707 (Q41707) Extensin class 1 protei...    40  0.007
TC225986 weakly similar to UP|Q9W1I6 (Q9W1I6) CG18426-PA (LD1203...    39  0.015
TC204086 similar to UP|Q8H2B9 (Q8H2B9) 60s acidic ribosomal prot...    38  0.019
TC229948 similar to UP|Q9MAC6 (Q9MAC6) T4P13.15 protein, partial...    37  0.033
TC218782 similar to UP|Q41042 (Q41042) Pisum sativum L. (clone n...    37  0.033
TC203614 UP|Q94LX2 (Q94LX2) Beta-conglycinin alpha subunit, comp...    37  0.056
TC224564 similar to PIR|T51159|T51159 HMG protein [imported] - A...    36  0.073
TC218421 similar to GB|AAQ65192.1|34365761|BT010569 At3g08670 {A...    36  0.073
TC210062 GT-2 factor [Glycine max]                                     36  0.073
BE661601 weakly similar to GP|12483839|gb| p6.9 {Heliocoverpa ar...    36  0.096
TC203440 similar to UP|RL4_PRUAR (Q9XF97) 60S ribosomal protein ...    35  0.12
TC214082 similar to UP|Q75QC2 (Q75QC2) Glutamate-rich protein, p...    35  0.12
AW350436 homologue to SP|Q9XF97|RL4_ 60S ribosomal protein L4 (L...    35  0.12
TC218667 similar to GB|AAP31930.1|30387529|BT006586 At3g09570 {A...    35  0.16
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A...    35  0.21
TC226273 similar to GB|AAP37745.1|30725446|BT008386 At5g61156 {A...    35  0.21
TC204082 similar to UP|Q8H2B9 (Q8H2B9) 60s acidic ribosomal prot...    34  0.36
TC226613 similar to UP|Q8H0V8 (Q8H0V8) Spliceosome associated pr...    34  0.36
TC227594 UP|Q43450 (Q43450) G-box binding factor (Fragment), com...    34  0.36
BE822052 similar to GP|4557063|gb|A expressed protein {Arabidops...    33  0.47

>TC224645 homologue to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
           partial (58%)
          Length = 856

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
 Frame = +1

Query: 537 TSPIRSHAKVITESINSDSALVVVPEQPLPISTSMPTLTQTAPTQPETQTHTQAEHQAPI 596
           T+ +       T SI + + L+ V    +PI+T+   L  T+ T+P T T      Q   
Sbjct: 409 TTSLLLQVSTSTISITTSTLLLQVTSTTIPITTTPILLQVTSTTRPITTTSLLL--QVST 582

Query: 597 STIQTATTDI------PSIPIYTSSTSIPTEP----VPPLNSFIQGIIQS-EATLKTLVQ 645
           STI   TT +       +IPI T+S  +   P    + P +  +Q    +   T  TL+ 
Sbjct: 583 STISITTTPLLLQVTSSTIPITTTSILLQVTPTTISITPTSLLLQVTPTTISITTTTLLL 762

Query: 646 QFTSKPASTPHTFLITQ 662
           Q TS P +   T L+ Q
Sbjct: 763 QITSTPITFSTTSLLLQ 813


>TC225986 weakly similar to UP|Q9W1I6 (Q9W1I6) CG18426-PA (LD12035p), partial
           (13%)
          Length = 1553

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 40/135 (29%), Positives = 64/135 (46%), Gaps = 13/135 (9%)
 Frame = +2

Query: 399 REASSERSLKRTSTQQQQMSDSESSEDT----WEDFSSE-------ETEDEDRPLAKRRK 447
           REA  ER +++   Q++++ ++E   +T    WE    E       E E E     KRRK
Sbjct: 77  REAERER-VRKEREQRRRVEEAERQYETYLKDWEYREREKEKERQYEKEKEKERERKRRK 253

Query: 448 IILEEEEDEQDD--HEIIQNVIQGIRDSSEAEESTDSDEVHLVRRRKLPLKGPLQQKETV 505
            IL +EEDE +D      ++VI+  R     E+  D     LV R+K        ++E +
Sbjct: 254 EILYDEEDEDEDSRKRWRRSVIEEKRKKRLREKEDD-----LVDRQK--------EEEEI 394

Query: 506 AEQASESASEVQRER 520
           AE   ++  E +R+R
Sbjct: 395 AEAKKKAEEEQKRQR 439


>TC204086 similar to UP|Q8H2B9 (Q8H2B9) 60s acidic ribosomal protein,
           complete
          Length = 907

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 39/126 (30%), Positives = 54/126 (41%), Gaps = 2/126 (1%)
 Frame = -3

Query: 536 RTSPIRSHAKVITESINS--DSALVVVPEQPLPISTSMPTLTQTAPTQPETQTHTQAEHQ 593
           R  PI S     + + +S   SA    P  P P + +    T TAP  PE    + +   
Sbjct: 707 RLKPISSSDSSFSSTFSSFFTSAAGAAPPPPPPGAAA----TATAPPPPEGTEASFSLPA 540

Query: 594 APISTIQTATTDIPSIPIYTSSTSIPTEPVPPLNSFIQGIIQSEATLKTLVQQFTSKPAS 653
           A  STI    T   +  I +SS SIPTEP   L S  +G++        L  +  S+ A+
Sbjct: 539 AISSTISLPLTSDKNDSILSSSASIPTEPRISLMSSAEGVL--------LPPRTASRYAA 384

Query: 654 TPHTFL 659
           T   FL
Sbjct: 383 TTFIFL 366


>TC229948 similar to UP|Q9MAC6 (Q9MAC6) T4P13.15 protein, partial (16%)
          Length = 1798

 Score = 37.4 bits (85), Expect = 0.033
 Identities = 42/184 (22%), Positives = 78/184 (41%), Gaps = 7/184 (3%)
 Frame = +1

Query: 388 KKKAASKTVIIREASSERSLKRTSTQQQQMSDSESSEDTWEDFSSEETEDE--DRPLAKR 445
           KK   S+TV     S +   K+    +++ S  +   D  +  ++EE +D   + P AK+
Sbjct: 313 KKDKKSETVWDAYLSKKSEKKKAGKNKRKYSSDDDDSDDTDQEATEEADDFFIEEPAAKK 492

Query: 446 RKIILEEEEDEQDDHEIIQNVIQGIRDSSEAEESTDSDEVHLVRRRKLPL---KGPLQQK 502
           RK   + +EDE+  HE I  + +  ++  E   + D      V+   L     KG  +++
Sbjct: 493 RKKP-QNKEDEEQRHEEIDGLDKASKEELELLLADDKGTDTGVKGYNLKFKKGKGKKRRE 669

Query: 503 ETVAEQASESASEVQRERRSKRTSDPARAVQLTRTSPIRS--HAKVITESINSDSALVVV 560
             + E+  +  S    + R      P  A+  T     RS  +A+ + +    D+A   V
Sbjct: 670 NDIDEE--KIPSNAYNDPRFSALFSPNYAIDPTDPQFKRSATYARQLAQKQQKDNADPPV 843

Query: 561 PEQP 564
             +P
Sbjct: 844 EREP 855


>TC218782 similar to UP|Q41042 (Q41042) Pisum sativum L. (clone na-481-5),
           partial (20%)
          Length = 925

 Score = 37.4 bits (85), Expect = 0.033
 Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 10/159 (6%)
 Frame = +1

Query: 383 IEEPAKK-KAASKTVII---REASSERSLKRTSTQQQQMSDSESSEDTWEDFSSEETEDE 438
           +  PAKK KAAS +       + SS+     T  Q +++   +  E++  D SS E+EDE
Sbjct: 37  LSTPAKKGKAASSSSSSDSSEDDSSDEDEVATKKQTKEVKVQKGKEESSSDDSSSESEDE 216

Query: 439 DRPLAKRRKIILEEEEDEQDDHEIIQNVIQG---IRDSSEAEESTDSDEVHLVRRRKLPL 495
            +P AK   + +  +     +  +     +G      SS      DSDE    + +  P 
Sbjct: 217 -KPAAK---VAVPPKNQSAKNGTLSTPAEKGKPAASSSSSESSDDDSDEDEAPKSKVAPA 384

Query: 496 KG---PLQQKETVAEQASESASEVQRERRSKRTSDPARA 531
            G   P   K T   ++SES S+   +   K    PA A
Sbjct: 385 AGKNVPASTKITQPSESSESDSDSSSD-EDKNKKKPATA 498


>TC203614 UP|Q94LX2 (Q94LX2) Beta-conglycinin alpha subunit, complete
          Length = 1983

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
 Frame = +3

Query: 433 EETEDED-RPLAKRRKIILEEEEDEQDDHEIIQNVIQGIRDSSEAEESTDSDEVHLVRRR 491
           EE EDE  RP+   R    +EEE EQ + +      +   +    EE  D DE      R
Sbjct: 318 EEDEDEQPRPIPFPRPQPRQEEEHEQREEQEWPRKEEKRGEKGSEEEDEDEDEEQ--DER 491

Query: 492 KLPLKGPLQQKETVAEQASESASEVQRERRSKRTSD 527
           + P   P  QKE   E+  E   + +++R S+ + D
Sbjct: 492 QFPFPRPPHQKE---ERKQEEDEDEEQQRESEESED 590


>TC224564 similar to PIR|T51159|T51159 HMG protein [imported] - Arabidopsis
           thaliana {Arabidopsis thaliana;} , partial (82%)
          Length = 833

 Score = 36.2 bits (82), Expect = 0.073
 Identities = 24/74 (32%), Positives = 34/74 (45%)
 Frame = +1

Query: 386 PAKKKAASKTVIIREASSERSLKRTSTQQQQMSDSESSEDTWEDFSSEETEDEDRPLAKR 445
           P + KAA +     +       K+ S+   + SD   SE   ED +S E E+ED      
Sbjct: 388 PYEAKAAKRKAEYEKLIKAYDKKQASSADDEESDKSKSEVNDEDDASGEEEEEDD----- 552

Query: 446 RKIILEEEEDEQDD 459
                EEEED++DD
Sbjct: 553 -----EEEEDDEDD 579


>TC218421 similar to GB|AAQ65192.1|34365761|BT010569 At3g08670 {Arabidopsis
           thaliana;} , partial (46%)
          Length = 1256

 Score = 36.2 bits (82), Expect = 0.073
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
 Frame = +1

Query: 516 VQRERRSKRTSDPARAVQLTRTSPIRSHAKVITESINSDSALVVVPEQPLPISTSMPTLT 575
           V +   +   S PAR+  +TR+S   SH++  + S N  S+ ++        ++S    +
Sbjct: 241 VSQSENNNPASRPARSSSVTRSSISTSHSQYSSYSSNRHSSSIL-------NTSSASVSS 399

Query: 576 QTAPTQPETQTHTQAEHQAPISTIQTATTDIPS--IPIYTSSTSIPTEP 622
              P+ P T++ + A    P S    + +  PS   P+ TSST+    P
Sbjct: 400 YIRPSSPITRSSSSARPSTPSSRPTASRSSTPSKPRPVSTSSTAERNRP 546


>TC210062 GT-2 factor [Glycine max]
          Length = 712

 Score = 36.2 bits (82), Expect = 0.073
 Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
 Frame = +3

Query: 500 QQKETVAEQASESASEVQRERRSKRTSDPARAVQLTRTSPIRSHAKVITESI-------- 551
           +++E V  + +    E+QR  R +      R++   + + + +  + I E          
Sbjct: 426 REQERVVREEAWRMQEMQRINREREILAQERSIAAAKDAAVMTFLQKIAEHQQQETINLE 605

Query: 552 ----NSDSALVVVPEQPLPISTSMPTLTQTAPTQPETQT 586
               N+++++ VVP+QP+P +T+ PT     PT  + QT
Sbjct: 606 PALNNNNNSITVVPQQPVPQTTTTPT-----PTPQQAQT 707


>BE661601 weakly similar to GP|12483839|gb| p6.9 {Heliocoverpa armigera
           nucleopolyhedrovirus G4}, partial (56%)
          Length = 658

 Score = 35.8 bits (81), Expect = 0.096
 Identities = 30/101 (29%), Positives = 39/101 (37%), Gaps = 1/101 (0%)
 Frame = +1

Query: 527 DPARAVQLTRTSPIRSHAKVITESINSDSALVVVPEQPLPISTS-MPTLTQTAPTQPETQ 585
           +P  +   T T P  S A   + S+N+  A    P  PLP  TS  P+L    PT P   
Sbjct: 55  NPTASPPATATPPSPSPASAPSASVNASPA--SPPTTPLPCPTSAAPSLAPAPPTPPPPP 228

Query: 586 THTQAEHQAPISTIQTATTDIPSIPIYTSSTSIPTEPVPPL 626
                   AP      A + I S        ++PT P P L
Sbjct: 229 A------AAPAPPAPAAPSPISSPATTPEKQTVPTNPTPRL 333


>TC203440 similar to UP|RL4_PRUAR (Q9XF97) 60S ribosomal protein L4 (L1),
           complete
          Length = 1576

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 21/72 (29%), Positives = 31/72 (42%), Gaps = 2/72 (2%)
 Frame = +2

Query: 526 SDPARAVQLTRTSP--IRSHAKVITESINSDSALVVVPEQPLPISTSMPTLTQTAPTQPE 583
           S P  ++  TRTSP    SH   +   +        VP +P P+S   P    TAP +  
Sbjct: 263 SAPTSSISYTRTSPRTAASHTPSVVALVTRPPPNPGVPAEPSPVSPVFPAAEPTAPAKEP 442

Query: 584 TQTHTQAEHQAP 595
            +T   A+  +P
Sbjct: 443 LETCAAADACSP 478


>TC214082 similar to UP|Q75QC2 (Q75QC2) Glutamate-rich protein, partial (34%)
          Length = 1032

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 4/146 (2%)
 Frame = +1

Query: 300 PKEDTSDEVRQRNYLIDDFPIWSKKDNPACILEYVRMLRRQGDPITLTEFVNTLPESP-- 357
           P+ +T++ ++ +    +  P            E      +Q   +   E     P+    
Sbjct: 148 PENETTEVIKTQETTPEPVPATEAPATEQAAAEVPAQEEQQATEVPAPESTTEAPKEETT 327

Query: 358 --PKLTTRKSRRATSSKPSDPKGKGILIEEPAKKKAASKTVIIREASSERSLKRTSTQQQ 415
             P   T ++     +KP +PK   +  EE   K+   +     E S E   K    +++
Sbjct: 328 EAPTTETVETTTTEEAKPEEPKEVAVETEEVVTKETEEEKPAAEEKSEE---KTEEVKEE 498

Query: 416 QMSDSESSEDTWEDFSSEETEDEDRP 441
                E++E   E   +  TE+E++P
Sbjct: 499 AEEPKETTETETESAPAATTEEENKP 576


>AW350436 homologue to SP|Q9XF97|RL4_ 60S ribosomal protein L4 (L1).
           [Apricot] {Prunus armeniaca}, partial (35%)
          Length = 555

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 21/72 (29%), Positives = 31/72 (42%), Gaps = 2/72 (2%)
 Frame = -1

Query: 526 SDPARAVQLTRTSP--IRSHAKVITESINSDSALVVVPEQPLPISTSMPTLTQTAPTQPE 583
           S P  ++  TRTSP    SH   +   +        VP +P P+S   P    TAP +  
Sbjct: 489 SAPTSSISYTRTSPRTAASHTPSVVALVTRPPPNPGVPAEPSPVSPVFPAAEPTAPAKEP 310

Query: 584 TQTHTQAEHQAP 595
            +T   A+  +P
Sbjct: 309 LETCAAADACSP 274


>TC218667 similar to GB|AAP31930.1|30387529|BT006586 At3g09570 {Arabidopsis
           thaliana;} , partial (61%)
          Length = 817

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 24/68 (35%), Positives = 33/68 (48%)
 Frame = +1

Query: 561 PEQPLPISTSMPTLTQTAPTQPETQTHTQAEHQAPISTIQTATTDIPSIPIYTSSTSIPT 620
           P  P P + S  T T   PT P T T   A+  +P+ST  +++   PS P  ++STS   
Sbjct: 46  PPSPCPSTLSPTTST---PTPPAT-TSPPAKLTSPLSTSSSSSPTSPSSPSGSTSTSPTN 213

Query: 621 EPVPPLNS 628
            P  P  S
Sbjct: 214 SPFTPFTS 237


>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
           thaliana;} , partial (46%)
          Length = 902

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 24/86 (27%), Positives = 39/86 (44%)
 Frame = -3

Query: 347 TEFVNTLPESPPKLTTRKSRRATSSKPSDPKGKGILIEEPAKKKAASKTVIIREASSERS 406
           +E +++   SPP+ T+  S  ++SS  S P G        +   ++S +     +SS  S
Sbjct: 501 SESLSSSSGSPPRWTSPSSSSSSSSSSSPPSGASSSSSSLSSPSSSSSS---SSSSSSSS 331

Query: 407 LKRTSTQQQQMSDSESSEDTWEDFSS 432
              T++     S S SS  T   FSS
Sbjct: 330 ASSTTSSTDSYSSSSSSTKTLTSFSS 253


>TC226273 similar to GB|AAP37745.1|30725446|BT008386 At5g61156 {Arabidopsis
           thaliana;} , partial (34%)
          Length = 1407

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 40/158 (25%), Positives = 62/158 (38%), Gaps = 3/158 (1%)
 Frame = +2

Query: 338 RRQGDPITLTEFVNTLPESPPKLTTRKSRRATSSKPSDPKGKGILIEEPAKKKAASKTVI 397
           RRQ  P  L + ++   E+      R  RR       + + +  ++   AKK    K + 
Sbjct: 449 RRQLSPGFLEDALDEEDEADYYDNHRSQRRFEDDLEVEARAEKRIMN--AKKSQGPKDI- 619

Query: 398 IREASSERSLKRTSTQQQQMSDSESSEDTWEDFSSEETEDEDRPLAKRRKII---LEEEE 454
                S     ++S       D E  E  +E   +EE EDE  P  KR +      E+EE
Sbjct: 620 --PRKSSFPPAKSSRNPMGYPDDEREESEYE---TEEEEDERPPSRKRDEDTEPEYEDEE 784

Query: 455 DEQDDHEIIQNVIQGIRDSSEAEESTDSDEVHLVRRRK 492
           +E++ +E  + V     D  E E    S E     +RK
Sbjct: 785 EEEEHYEEAEQVNDASDDGEEEEPKQKSKEFRGSAKRK 898


>TC204082 similar to UP|Q8H2B9 (Q8H2B9) 60s acidic ribosomal protein,
           complete
          Length = 656

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 32/101 (31%), Positives = 44/101 (42%)
 Frame = -2

Query: 575 TQTAPTQPETQTHTQAEHQAPISTIQTATTDIPSIPIYTSSTSIPTEPVPPLNSFIQGII 634
           T TAP  PE      +   A  STI    T   +  I +SS S PTEP   L +  +G++
Sbjct: 343 TATAPPPPEGTVANFSLPAAISSTISLPLTSDKNDSILSSSASTPTEPRISLMTSAEGLL 164

Query: 635 QSEATLKTLVQQFTSKPASTPHTFLITQTGEIPAEKEKEDD 675
                   L  +  SK A+T  TF+  +  E   EK+   D
Sbjct: 163 --------LPPRTASKYAAT--TFIFLREREDANEKKTNGD 71


>TC226613 similar to UP|Q8H0V8 (Q8H0V8) Spliceosome associated protein-like
           (At4g21660), partial (59%)
          Length = 1844

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
 Frame = +2

Query: 413 QQQQMSDSESSEDT---WEDFSSEETEDEDRPLAKRRKIILEEEEDEQDDHEIIQNVIQG 469
           QQ Q +  E   D    W D   EE E+E+           EEEE+E+ + E ++  IQ 
Sbjct: 800 QQDQPNYEEEPVDKTKHWGDLEEEEEEEEEEE---------EEEEEEEMEEEELEAGIQS 952

Query: 470 IRDSSEAEESTDSDEVHLVRRR-----KLPLKGPLQQKE 503
           +   S      ++ +V  +R++     + PL   L++KE
Sbjct: 953 VDSLSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKE 1069


>TC227594 UP|Q43450 (Q43450) G-box binding factor (Fragment), complete
          Length = 1872

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 10/203 (4%)
 Frame = +2

Query: 335  RMLRRQGDPITLTEFVNTLPESPPKLTTRKSRRATSSKPSDPKGKGILIEEPAKKKAASK 394
            R   R+G PIT  E    L   P    T  S++  S+ P+   G    +  P      + 
Sbjct: 806  RKRSREGTPITDAEGKTELQNGPASKETASSKKIVSATPASVAG---TLVGPVVSSGMAT 976

Query: 395  TVIIREASSERSLKRTSTQQQQMSDSESSEDTW----EDFSSEETEDEDRPLAKRRKIIL 450
             + +R  S+  S K  ST   Q      +E TW     +   E  +  +R  A+R + + 
Sbjct: 977  ALELRNPSTVHS-KANSTSAAQPCAVVRNE-TWLQNERELKRERRKQSNRESARRSR-LR 1147

Query: 451  EEEEDEQDDHEIIQNVIQGIRDSSEAEESTDSDEVHLVRRRKLPLK------GPLQQKET 504
            ++ E E+   ++     + +   SE    T+  E   +    L  K      GP +++ T
Sbjct: 1148 KQAETEELARKVEMLTAENVSLKSEITRLTEGSEQMRMENSALREKLINTQLGP-REEIT 1324

Query: 505  VAEQASESASEVQRERRSKRTSD 527
            ++   S+ A+ V  E    R ++
Sbjct: 1325 LSSIDSKRAAPVSTENLLSRVNN 1393


>BE822052 similar to GP|4557063|gb|A expressed protein {Arabidopsis
           thaliana}, partial (28%)
          Length = 668

 Score = 33.5 bits (75), Expect = 0.47
 Identities = 24/78 (30%), Positives = 34/78 (42%), Gaps = 2/78 (2%)
 Frame = -1

Query: 408 KRTSTQQQQMSDSESSEDTWEDFSSEETEDE--DRPLAKRRKIILEEEEDEQDDHEIIQN 465
           K T    +  SDS+  ED  +D  + +  DE  D   +       EEE D +DD E   N
Sbjct: 554 KHTYRLNKDASDSDEDEDEEDDHDTNDQNDEEGDEDFSGEG----EEEADPEDDPE--AN 393

Query: 466 VIQGIRDSSEAEESTDSD 483
              G  D  +++E  D D
Sbjct: 392 GAGGSNDDDDSDEDDDDD 339


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.311    0.127    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,592,083
Number of Sequences: 63676
Number of extensions: 453712
Number of successful extensions: 2997
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 2886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2976
length of query: 997
length of database: 12,639,632
effective HSP length: 107
effective length of query: 890
effective length of database: 5,826,300
effective search space: 5185407000
effective search space used: 5185407000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)


Lotus: description of TM0476b.8