TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0476b.5
         (58 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW507721 weakly similar to GP|27764548|gb polyprotein {Glycine m...    40  2e-04
CO982196                                                               25  6.3

>AW507721 weakly similar to GP|27764548|gb polyprotein {Glycine max}, partial
           (3%)
          Length = 464

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 32/53 (60%)
 Frame = +1

Query: 1   KLILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKV 53
           K+I+ E H S++  H G T+    +   F+ P M++ ++++V  C+  Q+AKV
Sbjct: 274 KMIMTESHASKVGGHAGTTRTIVRINAQFYWPKMREDIMKFVQECVICQQAKV 432


>CO982196 
          Length = 812

 Score = 25.4 bits (54), Expect = 6.3
 Identities = 14/44 (31%), Positives = 21/44 (46%)
 Frame = +1

Query: 2   LILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTC 45
           L+L E   S L  H G  + ++ +    +  GMKK   +YV  C
Sbjct: 373 LLLKELQDSPLGGHSGFFRTFKRVANVVFWQGMKKTTRDYVAAC 504


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.322    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,726,245
Number of Sequences: 63676
Number of extensions: 26378
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of query: 58
length of database: 12,639,632
effective HSP length: 34
effective length of query: 24
effective length of database: 10,474,648
effective search space: 251391552
effective search space used: 251391552
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)