BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0476b.3
(862 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BM892478 99 1e-20
TC220316 96 9e-20
AW781991 93 4e-19
BG882562 92 1e-18
AW569215 weakly similar to GP|4914326|gb| F14N23.12 {Arabidopsis... 64 3e-10
BM178397 similar to GP|4914326|gb| F14N23.12 {Arabidopsis thalia... 61 2e-09
BI973310 61 2e-09
BI424115 similar to GP|15982769|gb| At2g27110/T20P8.16 {Arabidop... 47 3e-05
BM309807 similar to GP|5764395|gb| far-red impaired response pro... 46 8e-05
TC233004 weakly similar to PIR|G96565|G96565 F6D8.26 [imported] ... 45 1e-04
BE806360 similar to GP|6175165|gb| Mutator-like transposase {Ara... 42 0.002
TC228242 weakly similar to UP|Q9LIE5 (Q9LIE5) Far-red impaired r... 38 0.022
TC207649 similar to UP|Q9SY66 (Q9SY66) F14N23.12 (At1g10240/F14N... 37 0.037
TC210254 similar to GB|AAM26637.1|20855902|AY101516 AT3g06940/F1... 36 0.083
TC230490 similar to UP|Q8LEE4 (Q8LEE4) Zinc finger protein, part... 33 0.70
BI320730 32 1.6
AW707105 similar to GP|6175248|gb|A jasmonic acid 1 {Lycopersico... 31 2.7
TC222311 similar to UP|Q9FYH7 (Q9FYH7) F17F8.23, partial (21%) 30 3.5
TC220753 30 4.6
>BM892478
Length = 429
Score = 98.6 bits (244), Expect = 1e-20
Identities = 52/131 (39%), Positives = 71/131 (53%)
Frame = +3
Query: 361 LDYLASLGTKDPSMFVRHTEDADKNLEHLFWCDGIGRMNYSVFGDALAFDATYKKNKYRR 420
L+Y S +D F D + N ++FW DG R + S FGD L D +Y+K Y
Sbjct: 33 LEYFQSRQAEDTGFFYAMEVD-NGNCMNIFWADGRSRYSCSHFGDVLVLDTSYRKTVYLV 209
Query: 421 PLVIFSCVNHRNQTTVVGGAVIGNEKEETYVWLLEQLLEAMDKKSPTTVITDGDKAMRNA 480
P F VNH Q ++G A+I +E EE++ WL + L AM + P TVI D D A++ A
Sbjct: 210 PFATFVGVNHHKQPVLLGCALIADESEESFTWLFQTWLRAMSGRLPLTVIADQDIAIQRA 389
Query: 481 IRRVFPNASHR 491
I +VFP HR
Sbjct: 390 IAKVFPVTHHR 422
>TC220316
Length = 988
Score = 95.5 bits (236), Expect = 9e-20
Identities = 50/210 (23%), Positives = 93/210 (43%)
Frame = +1
Query: 531 WESLVEEFNLHENPWIIDMYARRHTWAAAYFRGKFFAGFRTTSRCEGFNAQLGKFVKRRY 590
W ++ L ++ W+ +MY +R +W Y +G FFAG + F G + +
Sbjct: 46 WNXXXNKYGLKDDAWLKEMYQKRASWVPLYLKGTFFAGIPMNESLDSF---FGALLNAQT 216
Query: 591 NLKEFLQHFHHCLEYMRHREVEADFRSGYGDPGLKAPPIFQSIELSASRILTRQLFFRFR 650
L EF+ + LE R E + DF + P L+ + +E R+ T +F F+
Sbjct: 217 PLMEFIPRYERGLERRREEERKEDFNTSNFQPILQTK---EPVEEQCRRLYTLTVFKIFQ 387
Query: 651 PTIVSAADMIITNCEDTLGMSMHTVKRSQESSREWLVSYYTTTYEFRCSCMRMESIGLAC 710
++ + + G+S + V+R + +V++ + CSC E G+ C
Sbjct: 388 KELLQCFSYLGFKIFEEGGLSRYMVRRCGNDMEKHVVTFNASNISISCSCQMFEYEGVLC 567
Query: 711 AHIIAVLVDLNIHNIPKSLVLERWSQGAKD 740
H++ V L + +P +L RW++ +D
Sbjct: 568 RHVLRVFQILQLREVPSRYILHRWTRNTED 657
>AW781991
Length = 419
Score = 93.2 bits (230), Expect = 4e-19
Identities = 45/126 (35%), Positives = 70/126 (54%), Gaps = 1/126 (0%)
Frame = +3
Query: 331 GYNNTQYILKDLQNQVGKQR-RAHVSDGRSALDYLASLGTKDPSMFVRHTEDADKNLEHL 389
G + + D +N + R R+ D + LDYL + ++P+ F D D+++ ++
Sbjct: 36 GISKVGFTEVDCRNYMRNNRLRSLEGDIQLVLDYLRQMHAENPNFFYAVQGDEDQSITNV 215
Query: 390 FWCDGIGRMNYSVFGDALAFDATYKKNKYRRPLVIFSCVNHRNQTTVVGGAVIGNEKEET 449
FW D RMNY+ FGD + FD TY+ N+YR P F+ VNH Q + G A + NE E +
Sbjct: 216 FWADPKARMNYTFFGDTVTFDTTYRSNRYRLPFAFFTGVNHHGQPVLFGCAFLINESEAS 395
Query: 450 YVWLLE 455
+VWL +
Sbjct: 396 FVWLFK 413
>BG882562
Length = 416
Score = 92.0 bits (227), Expect = 1e-18
Identities = 46/123 (37%), Positives = 68/123 (54%)
Frame = +3
Query: 362 DYLASLGTKDPSMFVRHTEDADKNLEHLFWCDGIGRMNYSVFGDALAFDATYKKNKYRRP 421
+Y + +P+ F + D L ++FW D R YS FGD +AFD+T N Y P
Sbjct: 48 NYFCRIQLMNPNFFYVMDLNDDGQLRNVFWIDSRSRAAYSYFGDVVAFDSTCLSNNYEIP 227
Query: 422 LVIFSCVNHRNQTTVVGGAVIGNEKEETYVWLLEQLLEAMDKKSPTTVITDGDKAMRNAI 481
LV F VNH ++ ++G ++ +E ETY+WL L M + P T+IT+ KAM++AI
Sbjct: 228 LVAFVGVNHHGKSVLLGCGLLADETFETYIWLFRAWLTCMTGRPPQTIITNXCKAMQSAI 407
Query: 482 RRV 484
V
Sbjct: 408 AEV 416
>AW569215 weakly similar to GP|4914326|gb| F14N23.12 {Arabidopsis thaliana},
partial (19%)
Length = 425
Score = 63.9 bits (154), Expect = 3e-10
Identities = 34/137 (24%), Positives = 68/137 (48%), Gaps = 5/137 (3%)
Frame = +1
Query: 407 LAFDATYKKNKYRRPLVIFSCVNHRNQTTVVGGAVIGNEKEETYVWLLEQLLEAMDKKSP 466
+ FD TY+ Y L I+ V++ T A++ +E +++ W L+ L M K+P
Sbjct: 10 VVFDTTYRVEAYDMLLGIWLGVDNNGMTCFFSCALLRDENIQSFSWALKAFLGFMKGKAP 189
Query: 467 TTVITDGDKAMRNAIRRVFPNASHRLCAWHLMCNATD--NIKIPDFLPKFKT---CMFGD 521
T++TD + ++ AI P H C WH++ +D ++ + ++K ++
Sbjct: 190 QTILTDHNMWLKEAIAVELPQTKHAFCIWHILSKFSDWFSLLLGSQYDEWKAEFHRLYNL 369
Query: 522 FQIGDFKRKWESLVEEF 538
Q+ DF+ W +V+++
Sbjct: 370 EQVEDFEEGWRQMVDQY 420
>BM178397 similar to GP|4914326|gb| F14N23.12 {Arabidopsis thaliana}, partial
(20%)
Length = 422
Score = 61.2 bits (147), Expect = 2e-09
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Frame = +1
Query: 477 MRNAIRRVFPNASHRLCAWHLMC------NATDNIKIPDFLPKFKTCMFGDFQIGDFKRK 530
++ A+ P H C W ++ NA + D+ +F ++ + DF+
Sbjct: 13 LKEALSTEMPTTKHAFCIWMIVAKFPSWFNAVLGERYNDWKAEFYR-LYNLESVEDFELG 189
Query: 531 WESLVEEFNLHENPWIIDMYARRHTWAAAYFRGKFFAGFRTTSRCEGFNAQLGKFVKRRY 590
W + F LH N ++++Y+ R WA + R F AG TT + + NA + +F+ +
Sbjct: 190 WREMACSFGLHSNRHMVNLYSSRSLWALPFLRSHFLAGMTTTGQSKSINAFIQRFLSAQT 369
Query: 591 NLKEFLQ 597
L F++
Sbjct: 370 RLAHFVE 390
>BI973310
Length = 457
Score = 60.8 bits (146), Expect = 2e-09
Identities = 33/131 (25%), Positives = 60/131 (45%)
Frame = +3
Query: 524 IGDFKRKWESLVEEFNLHENPWIIDMYARRHTWAAAYFRGKFFAGFRTTSRCEGFNAQLG 583
I +F+ W SL+E F + +N W+ +Y R W Y R FF E +
Sbjct: 6 IDEFESYWHSLLERFYVMDNEWLQSIYNSRQHWVPVYLRETFFGEISLNEGNEYLISFFD 185
Query: 584 KFVKRRYNLKEFLQHFHHCLEYMRHREVEADFRSGYGDPGLKAPPIFQSIELSASRILTR 643
+V L+ ++ + + +E++AD+ + P LK P +E A+ + TR
Sbjct: 186 GYVFSSTTLQVLVRQYEKAVSSWHEKELKADYDTTNSSPVLKTP---SPMEKQAASLYTR 356
Query: 644 QLFFRFRPTIV 654
++F +F+ +V
Sbjct: 357 KIFMKFQEELV 389
>BI424115 similar to GP|15982769|gb| At2g27110/T20P8.16 {Arabidopsis
thaliana}, partial (9%)
Length = 402
Score = 47.4 bits (111), Expect = 3e-05
Identities = 19/70 (27%), Positives = 37/70 (52%)
Frame = +2
Query: 671 SMHTVKRSQESSREWLVSYYTTTYEFRCSCMRMESIGLACAHIIAVLVDLNIHNIPKSLV 730
S V + ++ + ++V+ + + CSC E G+ C HI+ V N+ +P +
Sbjct: 8 STFRVAKFEDDQKAYMVTLNHSELKANCSCQMFEYAGILCKHILTVFTVTNVLTLPPHYI 187
Query: 731 LERWSQGAKD 740
L+RW++ AK+
Sbjct: 188 LKRWTRNAKN 217
>BM309807 similar to GP|5764395|gb| far-red impaired response protein
{Arabidopsis thaliana}, partial (15%)
Length = 428
Score = 45.8 bits (107), Expect = 8e-05
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Frame = +3
Query: 634 ELSASRILTRQLFFRFRPTIVSAADMIITNCEDTLGMSMHTVKR----SQESSREWLVSY 689
E S + T +F +F+ ++ A C+ + T+ + E E+LV++
Sbjct: 48 EKQMSTVYTHAIFKKFQVEVLGVA-----GCQSRIEAGDGTIAKFIVQDYEKDEEFLVTW 212
Query: 690 YTTTYEFRCSCMRMESIGLACAHIIAVLVDLNIHNIPKSLVLERWSQGAK 739
+ E C C E G C H ++VL +P +L+RW++ AK
Sbjct: 213 NELSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSCVPSHYILKRWTKDAK 362
>TC233004 weakly similar to PIR|G96565|G96565 F6D8.26 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(8%)
Length = 551
Score = 45.1 bits (105), Expect = 1e-04
Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 12/167 (7%)
Frame = +1
Query: 585 FVKRRYNLKEFLQHFHHCLEYMRHREVEADFRSGYGDPGLKAPPIFQSIELSASRILTRQ 644
+V + + KEF+ + L +E AD + LK F E+ +++ T++
Sbjct: 7 YVHKHTSFKEFVDKYDLVLHRKHLKEAMADLETRNVSFELKTRCNF---EVQLAKVYTKE 177
Query: 645 LFFRFRPTIVSAADMIITNCEDTLGMSMH------------TVKRSQESSREWLVSYYTT 692
+F +F+ + + +C +T +S++ V+ +++ + + V Y TT
Sbjct: 178 IFQKFQSEVEG-----MYSCFNTRQVSVNGSIITYVVKERVEVEGNEKGVKSFEVLYETT 342
Query: 693 TYEFRCSCMRMESIGLACAHIIAVLVDLNIHNIPKSLVLERWSQGAK 739
+ RC C G C + VL I IP +L RW + K
Sbjct: 343 ELDIRCICSLFNYKGYLCRRALNVLNYNGIEEIPSRYILHRWRRDFK 483
>BE806360 similar to GP|6175165|gb| Mutator-like transposase {Arabidopsis
thaliana}, partial (17%)
Length = 431
Score = 41.6 bits (96), Expect = 0.002
Identities = 32/140 (22%), Positives = 54/140 (37%), Gaps = 14/140 (10%)
Frame = +2
Query: 441 VIGNEKEETYVWLLEQLLEAMDKKSPT----TVITDGDKAMRNAIRRVFPNASHRLCAWH 496
V+ E ++ ++W L +L ++ + T+++D K + + + FP A H C H
Sbjct: 11 VVDEENDDNWMWFLSELHNLLEIHTENMLRLTILSDRQKGIVDGVEASFPTAFHGFCMQH 190
Query: 497 LMCNATDNIKIPDFLPKFKTCMFGDFQIGDFKRKWESL--VEEFNLHENPWIIDMYARR- 553
L F +F M + WE+ + E NL + W + Y +
Sbjct: 191 LS---------DSFRKEFNNTMLVNLL-------WEAANALTELNLKQRFWRLKRYHKML 322
Query: 554 -------HTWAAAYFRGKFF 566
WA AYF G F
Sbjct: 323 HIDSRIPSLWATAYFEGHRF 382
>TC228242 weakly similar to UP|Q9LIE5 (Q9LIE5) Far-red impaired response
protein; Mutator-like transposase-like protein;
phytochrome A signaling protein-like, partial (25%)
Length = 1354
Score = 37.7 bits (86), Expect = 0.022
Identities = 47/206 (22%), Positives = 75/206 (35%), Gaps = 8/206 (3%)
Frame = +2
Query: 624 LKAPPIFQSIELSASRILTRQLFFRFRPTIVSAADMIITNCEDTLGMSMHTVKRSQESSR 683
LK P +E S + I T +F + + ++ A +H V E+++
Sbjct: 32 LKTP---SPLEKSVAGIFTHAVFKKIQAEVIGAVACHPKADRQDDTTIVHRV-HDMETNK 199
Query: 684 EWLVSYYTTTYEFRCSCMRMESIGLACAHIIAVLVDLNIHNIPKSLVLERWSQGAKDHLC 743
++ V E C C E G C H + VL P +L+RW++ AK
Sbjct: 200 DFFVVVNQVKSELSCICRLFEYRGYLCRHALFVLQYSGQSVFPSQYILKRWTKDAKVRNI 379
Query: 744 ETPGSSPSLFRDSAVLVRYVCMLEACRKMCTLACPLIDDFRQTWEIVG--GHTQHLENKN 801
S L R ++ +C A L ++ + E G H H +K+
Sbjct: 380 MGEESEHMLTR-----------VQRYNDLCQRALKLSEEGSLSQESYGIAFHALHEAHKS 526
Query: 802 NPSVPEG------VTGTPSANAGLTT 821
SV GTP A+ L+T
Sbjct: 527 CVSVNNSSKSSPTEAGTPGAHGQLST 604
>TC207649 similar to UP|Q9SY66 (Q9SY66) F14N23.12 (At1g10240/F14N23_12),
partial (30%)
Length = 971
Score = 37.0 bits (84), Expect = 0.037
Identities = 30/102 (29%), Positives = 43/102 (41%)
Frame = +2
Query: 633 IELSASRILTRQLFFRFRPTIVSAADMIITNCEDTLGMSMHTVKRSQESSREWLVSYYTT 692
+E A+ ILT F + + +V AA + ED + HT E R+ V +
Sbjct: 251 MESHAATILTPFAFSKLQEQLVLAAHYASFSIEDGFLVRHHT---KAEGGRK--VYWAPQ 415
Query: 693 TYEFRCSCMRMESIGLACAHIIAVLVDLNIHNIPKSLVLERW 734
CSC + E G+ C H + VL N IP + RW
Sbjct: 416 EGIISCSCHQFEFTGILCRHSLRVLSTGNCFQIPDRYLPIRW 541
>TC210254 similar to GB|AAM26637.1|20855902|AY101516 AT3g06940/F17A9_9
{Arabidopsis thaliana;} , partial (6%)
Length = 814
Score = 35.8 bits (81), Expect = 0.083
Identities = 19/40 (47%), Positives = 22/40 (54%), Gaps = 1/40 (2%)
Frame = +1
Query: 821 THRRRGRPCGPSTSRLRA-KRPLKCSTCKVIGHNRLTCPL 859
T R GRP + KR L+CS CK +GHNR TC L
Sbjct: 307 TKRPPGRPKMKQVESIDIIKRQLQCSKCKGLGHNRKTCKL 426
>TC230490 similar to UP|Q8LEE4 (Q8LEE4) Zinc finger protein, partial (19%)
Length = 574
Score = 32.7 bits (73), Expect = 0.70
Identities = 20/43 (46%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Frame = +3
Query: 822 HRRRGRPCG-----PSTSRLRA-KRPLKCSTCKVIGHNRLTCP 858
H RR P PS R A +RP KC CK GHN TCP
Sbjct: 327 HNRRTCPQAVPFAVPSKRRNAASRRPYKCRLCKKEGHNIRTCP 455
>BI320730
Length = 162
Score = 31.6 bits (70), Expect = 1.6
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 839 KRPLKCSTCKVIGHNRLTC 857
KR L CS CK +GHN+ TC
Sbjct: 5 KRHLHCSRCKGLGHNKSTC 61
>AW707105 similar to GP|6175248|gb|A jasmonic acid 1 {Lycopersicon
esculentum}, partial (27%)
Length = 373
Score = 30.8 bits (68), Expect = 2.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 800 KNNPSVPEGVTGTPSANAGLTTHRRRGRPCGPSTSR 835
KN+ + ++ TPS N+ L+TH+ R PS++R
Sbjct: 197 KNSSDIKLNISRTPSINSPLSTHQSNSRTLFPSSTR 304
>TC222311 similar to UP|Q9FYH7 (Q9FYH7) F17F8.23, partial (21%)
Length = 421
Score = 30.4 bits (67), Expect = 3.5
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +1
Query: 665 EDTLGMSMHTVKRSQESSREWLVSYYTTTYEFRCSCMRMESIGLACAHIIAVLVDLNIHN 724
E+ + +H V + ES+R W+ Y T + RCS M+ + CA + +DL +
Sbjct: 178 ENLRQLCVHRV--ANESNRSWVWWDYVTDFHVRCS-MKEKRYSKDCAEEVMKSLDLPVDK 348
Query: 725 IPKSL 729
I K +
Sbjct: 349 IKKCM 363
>TC220753
Length = 1312
Score = 30.0 bits (66), Expect = 4.6
Identities = 16/43 (37%), Positives = 22/43 (50%), Gaps = 7/43 (16%)
Frame = +2
Query: 823 RRRGRPCGPSTSRLRAK-------RPLKCSTCKVIGHNRLTCP 858
+RR P+T+R+ + R KCS CK GHN+ CP
Sbjct: 446 KRRQISGRPATTRIHNEMDESIPNRLKKCSLCKTEGHNQSNCP 574
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.351 0.156 0.561
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,331,905
Number of Sequences: 63676
Number of extensions: 652115
Number of successful extensions: 6258
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 4677
Number of HSP's successfully gapped in prelim test: 189
Number of HSP's that attempted gapping in prelim test: 1462
Number of HSP's gapped (non-prelim): 5036
length of query: 862
length of database: 12,639,632
effective HSP length: 105
effective length of query: 757
effective length of database: 5,953,652
effective search space: 4506914564
effective search space used: 4506914564
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0476b.3