TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0476b.2
         (264 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC232958                                                               29  1.9
TC213552 similar to UP|Q9C5X8 (Q9C5X8) Molybdenum cofactor sulfu...    29  1.9
CK606478                                                               28  3.2
AI941113                                                               28  4.2
BU547067                                                               28  4.2
TC213463 similar to UP|Q8H3D7 (Q8H3D7) Leaf senescence related p...    28  5.5
TC206118 similar to UP|Q40724 (Q40724) Transcriptional activator...    27  7.2
TC220751 UP|Q8CBJ2 (Q8CBJ2) Mus musculus 16 days neonate cerebel...    27  7.2
TC231381                                                               27  7.2
TC228959 homologue to GB|AAS99683.1|46518403|BT012539 At5g15710 ...    27  9.4

>TC232958 
          Length = 758

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
 Frame = +1

Query: 5   QDVLYHVFHRLPAYIVCRFKCVGKR-VDYTRIPRFCEEQADHMLSVGDLHIFTSPVSDYH 63
           QD++  +  RLP   + RFK V K  +     PRF +   D   ++ D  +F +  S   
Sbjct: 67  QDLITEILLRLPVKSLVRFKSVCKSWLFLISDPRFAKSHFDLFAALADRILFIA--SSAP 240

Query: 64  QVTGVGLHNLLEDGPAA-------GVPTDFFNVVARSGKILSSWNGLIVVRLRWKKVLRL 116
           ++  +  +  L D  A+         P  +F+ V    +I+ S  G I++      +  L
Sbjct: 241 ELRSIDFNASLHDDSASVAVTVDLPAPKPYFHFV----EIIGSCRGFILLHC----LSHL 396

Query: 117 LICNPVT 123
            + NP T
Sbjct: 397 CVWNPTT 417


>TC213552 similar to UP|Q9C5X8 (Q9C5X8) Molybdenum cofactor sulfurase,
           partial (12%)
          Length = 704

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 216 NYHYMNFIDDATLMPYIMAYSHTDHTSVRLDL 247
           +Y   N+I+D  L  ++  Y+HT H  +R+ +
Sbjct: 553 HYKVTNYIEDMNLQAFVYDYTHTLHILIRMHI 458


>CK606478 
          Length = 815

 Score = 28.5 bits (62), Expect = 3.2
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
 Frame = +3

Query: 206 VNEWIYFMSDNYHYMNF-------IDDATLMPYIMAYSHTDHTSVRLDLPNNALEYLFHG 258
           +NEWIYF + N  ++++       +D AT + Y+ +++   H    ++  N  L+  F G
Sbjct: 48  LNEWIYFHNVNGKFLSWMQRMQIALDVATGLDYLHSFTSPPHIHKDINSSNILLDGDFRG 227


>AI941113 
          Length = 206

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 17/69 (24%), Positives = 34/69 (48%)
 Frame = +2

Query: 117 LICNPVTSSWAPLRTRCGEYDANANVNIIIIPATAPTRNDYRLLSVTRQNKIFPPYVLKE 176
           ++CNPVT S + L       + N ++N +++  T   +  Y+++ V  +    P  + K 
Sbjct: 5   VVCNPVTGSCSELPPLHFALE-NQSLNAVVMSTTFNDQMSYKIVLVFGE---LPNLLFKV 172

Query: 177 YNQIADQWQ 185
           YN  +  W+
Sbjct: 173 YNSGSSCWE 199


>BU547067 
          Length = 732

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 185 QVLNPDMNLGDRKLNISKPAIVNEWIY 211
           QVL  + NL D+K N+S P+  N  +Y
Sbjct: 305 QVLMSNENLEDKKCNVSSPSTANPSVY 225


>TC213463 similar to UP|Q8H3D7 (Q8H3D7) Leaf senescence related protein-like,
           partial (10%)
          Length = 674

 Score = 27.7 bits (60), Expect = 5.5
 Identities = 23/77 (29%), Positives = 36/77 (45%), Gaps = 12/77 (15%)
 Frame = -3

Query: 52  LHIFTSPVSDYHQVTGVGLHNLLEDGPAAGVPTDFFNVVAR--------SGKILSSWNG- 102
           LH+F SP S +H+      H +     + G  T F  +  R        +  IL++++G 
Sbjct: 411 LHLFGSPFSSFHETKS---HVIFYSPHSTGSFTSFSKIGHRFV*LITFSANGILTNYSGT 241

Query: 103 ---LIVVRLRWKKVLRL 116
              L+V  LR KK+L L
Sbjct: 240 *ETLVVCCLRSKKILPL 190


>TC206118 similar to UP|Q40724 (Q40724) Transcriptional activator protein,
           partial (7%)
          Length = 526

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -1

Query: 91  ARSGKILSSWNGLIVVRLRWKKVLRLLICNPVTSSWAPLRT 131
           +RSG   S  N ++VV +RWK        N V  SW   RT
Sbjct: 172 SRSGNS*SRSNSVVVVAIRWK*PWPEKTDNGVRDSWDAART 50


>TC220751 UP|Q8CBJ2 (Q8CBJ2) Mus musculus 16 days neonate cerebellum cDNA,
           RIKEN full-length enriched library, clone:9630015E22
           product:odd Oz/ten-m homolog 1 (Drosophila), full insert
           sequence. (Fragment), partial (7%)
          Length = 444

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 91  ARSGKILSSWNGLIVVRLRWKKVLRLLICNPVTSSWAPLRT 131
           +RSG   S  N ++VV +RWK        N V  SW   RT
Sbjct: 169 SRSGNS*SRSNSVVVVAIRWK*PWPEKTDNGVRDSWDAART 47


>TC231381 
          Length = 564

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 91  ARSGKILSSWNGLIVVRLRWKKVLRLLICNPVTSSWAPLRT 131
           +RSG   S  N ++VV +RWK        N V  SW   RT
Sbjct: 176 SRSGNS*SRSNSVVVVAIRWK*PWPEKTDNGVRDSWDAART 54


>TC228959 homologue to GB|AAS99683.1|46518403|BT012539 At5g15710 {Arabidopsis
           thaliana;} , partial (59%)
          Length = 1137

 Score = 26.9 bits (58), Expect = 9.4
 Identities = 35/167 (20%), Positives = 61/167 (35%), Gaps = 3/167 (1%)
 Frame = +2

Query: 96  ILSSWNGLIVVRLRWKKVLRLLICNPVTSSWAPLRTRCGEYDANANVNIIIIPATAPTRN 155
           ++ S  GL+          + L+CNP+T +W  L +       N    ++++        
Sbjct: 38  LVGSSGGLVCFSGHDGLTFKTLVCNPLTQTWRALPS----MHYNQQRQLVLVVDRVDQSF 205

Query: 156 DYRLLSVTRQNKIFPPYVLKEYNQIADQWQV--LNPDMNLGDRKLNISKPAIVNEWIYFM 213
                S    +K  P  V   Y+   D W V  + P +NL   K+               
Sbjct: 206 KVIATSDIYGDKSLPTEV---YDSKTDSWTVHQIMPAVNLCSSKM-------------AY 337

Query: 214 SDNYHYMNFIDDATLMPYIMAYSHTDHTSVRLDLPNNALE-YLFHGS 259
            D+  Y+  +    LM Y +   H +H   +   P + L+ YL  G+
Sbjct: 338 CDSRLYLETLSPLGLMMYRLDTGHWEHIPAK--FPRSLLDGYLVAGT 472


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.325    0.140    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,998,466
Number of Sequences: 63676
Number of extensions: 212407
Number of successful extensions: 1243
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of query: 264
length of database: 12,639,632
effective HSP length: 96
effective length of query: 168
effective length of database: 6,526,736
effective search space: 1096491648
effective search space used: 1096491648
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)