TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0476a.7
         (109 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC228309 similar to UP|Q6Z916 (Q6Z916) Pentatricopeptide (PPR) r...    59  5e-10
TC228310 similar to UP|Q6Z916 (Q6Z916) Pentatricopeptide (PPR) r...    48  8e-07
TC218810 weakly similar to UP|Q8L857 (Q8L857) 3-beta-hydroxyster...    26  2.5
TC218158 similar to UP|Q7XAF8 (Q7XAF8) Papillar cell-specific pe...    26  3.3
TC230395                                                               25  5.6
TC205735 similar to UP|O48939 (O48939) Polyphosphoinositide bind...    25  7.4
TC227130 similar to UP|Q8GSD7 (Q8GSD7) MRNA capping enzyme-like ...    24  9.6
TC223607 similar to GB|AAO39924.1|28372884|BT003696 At4g04630 {A...    24  9.6
TC212160                                                               24  9.6
AW705229                                                               24  9.6

>TC228309 similar to UP|Q6Z916 (Q6Z916) Pentatricopeptide (PPR)
           repeat-containing protein-like, partial (68%)
          Length = 673

 Score = 58.5 bits (140), Expect = 5e-10
 Identities = 30/44 (68%), Positives = 34/44 (77%)
 Frame = +3

Query: 13  IYQDTVKAIVACLANTVDSAESVLRVAATGHDKRLYFKVSPSLY 56
           I Q++  AIVA LANT+  AESV RVAATGHDKRL+ KV  SLY
Sbjct: 282 ISQESANAIVAWLANTIGGAESVFRVAATGHDKRLFLKVILSLY 413


>TC228310 similar to UP|Q6Z916 (Q6Z916) Pentatricopeptide (PPR)
           repeat-containing protein-like, partial (48%)
          Length = 600

 Score = 47.8 bits (112), Expect = 8e-07
 Identities = 23/31 (74%), Positives = 25/31 (80%)
 Frame = +1

Query: 26  ANTVDSAESVLRVAATGHDKRLYFKVSPSLY 56
           ANT+  AESV RVAATGHDKRL+ KV  SLY
Sbjct: 352 ANTIGGAESVFRVAATGHDKRLFLKVILSLY 444


>TC218810 weakly similar to UP|Q8L857 (Q8L857) 3-beta-hydroxysteroid
           dehydrogenase, partial (47%)
          Length = 831

 Score = 26.2 bits (56), Expect = 2.5
 Identities = 15/42 (35%), Positives = 25/42 (58%)
 Frame = +1

Query: 15  QDTVKAIVACLANTVDSAESVLRVAATGHDKRLYFKVSPSLY 56
           +D    I   +A++ + A +VL+  A G+D  L+FKV  SL+
Sbjct: 334 EDMSHQIALSVASSWNIAVNVLKSLAEGNDWVLFFKVVLSLF 459


>TC218158 similar to UP|Q7XAF8 (Q7XAF8) Papillar cell-specific pectin
           methylesterase-like protein, partial (59%)
          Length = 1291

 Score = 25.8 bits (55), Expect = 3.3
 Identities = 11/38 (28%), Positives = 16/38 (41%)
 Frame = -3

Query: 6   CGSSGVAIYQDTVKAIVACLANTVDSAESVLRVAATGH 43
           CG+ G     DT  A   CL +T+     +  +   GH
Sbjct: 398 CGAEGCPAINDTTIACDNCLVDTIPDHHQIRLLLINGH 285


>TC230395 
          Length = 516

 Score = 25.0 bits (53), Expect = 5.6
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 24  CLANTVDSAESVLRVAATGHDKRLYFKVSPSLY*ILTHFVHVWFSV 69
           CL +T+DS  S L    T H          + Y ++   +H WF +
Sbjct: 384 CLKSTLDSTNSTL*EILTSH----------TTYKVVLRTLHAWFMI 491


>TC205735 similar to UP|O48939 (O48939) Polyphosphoinositide binding protein
           Ssh1p, partial (38%)
          Length = 967

 Score = 24.6 bits (52), Expect = 7.4
 Identities = 11/16 (68%), Positives = 12/16 (74%)
 Frame = +2

Query: 91  *CALSLDTFTIIVNFI 106
           *C  SLD FT I+NFI
Sbjct: 119 *CLKSLDCFTFILNFI 166


>TC227130 similar to UP|Q8GSD7 (Q8GSD7) MRNA capping enzyme-like protein,
           partial (8%)
          Length = 682

 Score = 24.3 bits (51), Expect = 9.6
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +1

Query: 47  LYFKVSPSLY*ILTHFVHVWFSVC*SNFGLN*F 79
           LY+ VS SL *+L     VW S   SN GLN F
Sbjct: 385 LYYVVS*SLR*VLLCC*AVWCS*YGSNSGLNPF 483


>TC223607 similar to GB|AAO39924.1|28372884|BT003696 At4g04630 {Arabidopsis
           thaliana;} , partial (29%)
          Length = 617

 Score = 24.3 bits (51), Expect = 9.6
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = -2

Query: 13  IYQDTVKAIVACLANTVDS 31
           IY   VKA++ACL NT +S
Sbjct: 547 IYIPNVKALLACLDNT*ES 491


>TC212160 
          Length = 957

 Score = 24.3 bits (51), Expect = 9.6
 Identities = 10/22 (45%), Positives = 15/22 (67%)
 Frame = -1

Query: 44  DKRLYFKVSPSLY*ILTHFVHV 65
           D++LY   SPSL+ +  H VH+
Sbjct: 498 DRQLYQSRSPSLFSVCLHDVHL 433


>AW705229 
          Length = 441

 Score = 24.3 bits (51), Expect = 9.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 27  NTVDSAESVLRVAATGHDKRLYFKVSPSLY 56
           NT   A S +R  A  +D  L+FKVS  LY
Sbjct: 237 NTSSKASSGIRKRA--YDPELFFKVSGKLY 320


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.366    0.161    0.597 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,946,000
Number of Sequences: 63676
Number of extensions: 54979
Number of successful extensions: 732
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of query: 109
length of database: 12,639,632
effective HSP length: 85
effective length of query: 24
effective length of database: 7,227,172
effective search space: 173452128
effective search space used: 173452128
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 51 (24.3 bits)