TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0476a.1
         (57 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CA800241                                                               84  1e-17
TC212139 similar to UP|Q94EN5 (Q94EN5) Beta-1,3-glucanase  (Frag...    27  2.8
BI974474                                                               26  4.8
BE348035 weakly similar to GP|5882738|gb|A Contains 3 PF|01535 D...    25  6.3
TC208502 similar to GB|AAN31116.1|23506209|AY149962 At3g06130/F2...    25  8.2
TC216286 similar to UP|Q8GTR0 (Q8GTR0) Sugar transporter, partia...    25  8.2
TC216288 homologue to UP|Q8GTR0 (Q8GTR0) Sugar transporter, part...    25  8.2

>CA800241 
          Length = 433

 Score = 84.3 bits (207), Expect = 1e-17
 Identities = 41/56 (73%), Positives = 47/56 (83%)
 Frame = +3

Query: 1  RRRRVIYRSTHELDANDVVSISMWVESHLNCVFFYEDFSNSDPFILGIQTE*QLQR 56
          R+ R I RST+ELD +D VSISMWVESH N VFFYEDFS+S+PF LGIQTE QLQ+
Sbjct: 12 RQERAIRRSTYELDDDDAVSISMWVESHQNLVFFYEDFSDSNPFTLGIQTEWQLQQ 179


>TC212139 similar to UP|Q94EN5 (Q94EN5) Beta-1,3-glucanase  (Fragment) ,
           partial (29%)
          Length = 560

 Score = 26.6 bits (57), Expect = 2.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 8   RSTHELDANDVVSISMWVESHLNCVF 33
           +ST   D ND+ +IS    SH +CVF
Sbjct: 156 KSTQSCDFNDMATISTTNPSHGSCVF 233


>BI974474 
          Length = 343

 Score = 25.8 bits (55), Expect = 4.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 26  ESHLNCVFFYEDFSNSDPFILG 47
           + H N VFFY D     PFI G
Sbjct: 135 QCHFNVVFFYHDKMPK*PFIYG 200


>BE348035 weakly similar to GP|5882738|gb|A Contains 3 PF|01535 DUF17
           domains. {Arabidopsis thaliana}, partial (5%)
          Length = 469

 Score = 25.4 bits (54), Expect = 6.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 3   RRVIYRSTHELDANDVVSISMWVESHLNCVFFYE 36
           R  + +  H   A+D   + +WVE  L C+ FY+
Sbjct: 323 RNKVVKIVHNRFASDPS*L*IWVEGALICISFYQ 222


>TC208502 similar to GB|AAN31116.1|23506209|AY149962 At3g06130/F28L1_7
           {Arabidopsis thaliana;} , partial (19%)
          Length = 867

 Score = 25.0 bits (53), Expect = 8.2
 Identities = 12/27 (44%), Positives = 16/27 (58%)
 Frame = -2

Query: 1   RRRRVIYRSTHELDANDVVSISMWVES 27
           RRR  I R  H +D++   SI  W+ES
Sbjct: 590 RRRVAIRRRVHVIDSHRRPSIHHWLES 510


>TC216286 similar to UP|Q8GTR0 (Q8GTR0) Sugar transporter, partial (45%)
          Length = 1342

 Score = 25.0 bits (53), Expect = 8.2
 Identities = 10/41 (24%), Positives = 19/41 (45%)
 Frame = +1

Query: 5    VIYRSTHELDANDVVSISMWVESHLNCVFFYEDFSNSDPFI 45
            +IY +  ++  N +  +  W+ S L C F  +  S    F+
Sbjct: 1069 IIYVTVRDIIFNRLNFVPFWIRSSLACKFCLQSLSMGGSFV 1191


>TC216288 homologue to UP|Q8GTR0 (Q8GTR0) Sugar transporter, partial (16%)
          Length = 886

 Score = 25.0 bits (53), Expect = 8.2
 Identities = 10/41 (24%), Positives = 19/41 (45%)
 Frame = +1

Query: 5   VIYRSTHELDANDVVSISMWVESHLNCVFFYEDFSNSDPFI 45
           +IY +  ++  N +  +  W+ S L C F  +  S    F+
Sbjct: 562 IIYVTVRDIIFNRLNFVPFWIRSSLACKFCLQSLSMGGSFV 684


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.335    0.144    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,938,234
Number of Sequences: 63676
Number of extensions: 31425
Number of successful extensions: 300
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of query: 57
length of database: 12,639,632
effective HSP length: 33
effective length of query: 24
effective length of database: 10,538,324
effective search space: 252919776
effective search space used: 252919776
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 52 (24.6 bits)