BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0403.9
(139 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203367 similar to UP|Q6V7X5 (Q6V7X5) 10 kDa photosystem II pol... 249 3e-67
TC203253 similar to UP|Q6V7X5 (Q6V7X5) 10 kDa photosystem II pol... 247 1e-66
TC203728 similar to UP|Q6V7X5 (Q6V7X5) 10 kDa photosystem II pol... 213 2e-56
TC203909 weakly similar to UP|Q6V7X5 (Q6V7X5) 10 kDa photosystem... 191 7e-50
CD395464 133 3e-32
AI900722 weakly similar to SP|P06183|PSBR_ Photosystem II 10 kDa... 132 5e-32
BE190199 weakly similar to SP|Q40163|PSBR Photosystem II 10 kDa ... 117 1e-27
AW424360 similar to SP|P06183|PSBR_ Photosystem II 10 kDa polype... 113 3e-26
AI855558 similar to SP|Q40519|PSBR_ Photosystem II 10 kDa polype... 90 4e-19
TC203818 similar to UP|Q6V7X5 (Q6V7X5) 10 kDa photosystem II pol... 89 9e-19
AW781435 weakly similar to SP|P06183|PSBR_ Photosystem II 10 kDa... 72 9e-14
TC203853 weakly similar to UP|Q9SXF7 (Q9SXF7) Amino acid transpo... 72 9e-14
CD409444 68 2e-12
AI965507 similar to SP|P10690|PSBR_ Photosystem II 10 kDa polype... 59 1e-09
CD409459 homologue to GP|1418984|emb| photosystem II 10 kD polyp... 52 1e-07
AI959892 similar to SP|Q40519|PSBR_ Photosystem II 10 kDa polype... 49 1e-06
BG511811 SP|P10690|PSBR Photosystem II 10 kDa polypeptide chlor... 36 0.005
CA852999 28 1.9
TC226242 similar to UP|Q9AUE1 (Q9AUE1) Ferredoxin, partial (59%) 28 1.9
TC226241 similar to UP|FER3_MAIZE (P27788) Ferredoxin III, chlor... 28 1.9
>TC203367 similar to UP|Q6V7X5 (Q6V7X5) 10 kDa photosystem II polypeptide,
complete
Length = 759
Score = 249 bits (636), Expect = 3e-67
Identities = 124/139 (89%), Positives = 132/139 (94%)
Frame = +3
Query: 1 MASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNL 60
MASSVMASV+LKPA F++EKSSVRGLPSLSR+S+SFRVVASGGKKIKTD PYG GGM L
Sbjct: 111 MASSVMASVALKPAPFTVEKSSVRGLPSLSRNSSSFRVVASGGKKIKTDKPYGINGGMAL 290
Query: 61 RNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 120
R GVDASGRK +GKGVYQ+VDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL
Sbjct: 291 REGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 470
Query: 121 LGLLAGGALLVYNTSALSQ 139
LGLLAGGALLVYNTSAL+Q
Sbjct: 471 LGLLAGGALLVYNTSALAQ 527
>TC203253 similar to UP|Q6V7X5 (Q6V7X5) 10 kDa photosystem II polypeptide,
complete
Length = 1184
Score = 247 bits (630), Expect = 1e-66
Identities = 123/139 (88%), Positives = 131/139 (93%)
Frame = +2
Query: 1 MASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNL 60
MASSVMASV+LKPA F++EKSSVRGLPSLSR+S+SFRVVASGGKKIKTD PYG GGM L
Sbjct: 80 MASSVMASVALKPAPFTVEKSSVRGLPSLSRNSSSFRVVASGGKKIKTDKPYGINGGMAL 259
Query: 61 RNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 120
R+G DASGRK +GKGVYQ+VDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL
Sbjct: 260 RDGTDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 439
Query: 121 LGLLAGGALLVYNTSALSQ 139
LGLLAGGALLVYNTSAL Q
Sbjct: 440 LGLLAGGALLVYNTSALVQ 496
>TC203728 similar to UP|Q6V7X5 (Q6V7X5) 10 kDa photosystem II polypeptide,
complete
Length = 805
Score = 213 bits (543), Expect = 2e-56
Identities = 107/139 (76%), Positives = 122/139 (86%)
Frame = +2
Query: 1 MASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNL 60
MASSVMASV+LKPA F++EKSSVRGLPSLSR+S+SFRVVA+GGKKIKTD PYG GGM L
Sbjct: 389 MASSVMASVALKPAPFTVEKSSVRGLPSLSRNSSSFRVVATGGKKIKTDKPYGINGGMAL 568
Query: 61 RNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 120
R+G DASGRK +G GVY V+KY ANVDGYSPIY+TKDWS TGD+Y G +TG +I AVTL
Sbjct: 569 RDGTDASGRKGKGNGVYHIVNKYRANVDGYSPIYNTKDWSSTGDIYTGSSTG*SICAVTL 748
Query: 121 LGLLAGGALLVYNTSALSQ 139
LGLLAGGAL+VYNT+AL Q
Sbjct: 749 LGLLAGGALIVYNTNALVQ 805
>TC203909 weakly similar to UP|Q6V7X5 (Q6V7X5) 10 kDa photosystem II
polypeptide, complete
Length = 1112
Score = 191 bits (486), Expect = 7e-50
Identities = 94/139 (67%), Positives = 111/139 (79%)
Frame = +3
Query: 1 MASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNL 60
MASSVMASV LKPA F++EKSSVRGLPSLS++S+SFRVVASGGKKIKTD PYG GGM L
Sbjct: 696 MASSVMASVXLKPAPFTVEKSSVRGLPSLSKNSSSFRVVASGGKKIKTDKPYGINGGMAL 875
Query: 61 RNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 120
+ G+DASG K + KG+Y ++DKYG NVD Y PIY+TKD SPT ++YA TT L I +TL
Sbjct: 876 KEGIDASGXK*KEKGIYHFIDKYGTNVDSYXPIYNTKD*SPTNNIYANNTTNLTI*TITL 1055
Query: 121 LGLLAGGALLVYNTSALSQ 139
L LL LL+YNT+AL Q
Sbjct: 1056LNLLTNNTLLIYNTNALXQ 1112
>CD395464
Length = 616
Score = 133 bits (334), Expect = 3e-32
Identities = 61/69 (88%), Positives = 63/69 (90%)
Frame = +1
Query: 41 SGGKKIKTDTPYGTGGGMNLRNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWS 100
SGGKKIKTD PYG GGM LR GVDASGRK +GKGVYQ+VDKYGANVDGYSPIYDTKDWS
Sbjct: 409 SGGKKIKTDKPYGINGGMALREGVDASGRKGQGKGVYQFVDKYGANVDGYSPIYDTKDWS 588
Query: 101 PTGDVYAGG 109
PTGDVYAGG
Sbjct: 589 PTGDVYAGG 615
>AI900722 weakly similar to SP|P06183|PSBR_ Photosystem II 10 kDa polypeptide
chloroplast precursor, partial (43%)
Length = 379
Score = 132 bits (332), Expect = 5e-32
Identities = 72/121 (59%), Positives = 83/121 (68%)
Frame = +2
Query: 19 EKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASGRKPRGKGVYQ 78
EK++V+GLPSL ++S SFRVV SGGK IKTD P G GG +R G DA GRK GK +Q
Sbjct: 17 EKNAVKGLPSLQKNSCSFRVVDSGGKTIKTDKPDGINGGTAVREGGDACGRKGMGKDDHQ 196
Query: 79 YVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGALLVYNTSALS 138
V ++ AN DG PIYDTKDW+ GD YAG TT I AVTLL GGALL Y+TSA
Sbjct: 197 VVHQHRANADGNRPIYDTKDWAANGDDYAGVTTDEDIRAVTLLDAHDGGALLGYSTSAED 376
Query: 139 Q 139
Q
Sbjct: 377 Q 379
>BE190199 weakly similar to SP|Q40163|PSBR Photosystem II 10 kDa polypeptide
chloroplast precursor. [Tomato] {Lycopersicon
esculentum}, partial (82%)
Length = 373
Score = 117 bits (294), Expect = 1e-27
Identities = 67/120 (55%), Positives = 77/120 (63%)
Frame = +2
Query: 18 LEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASGRKPRGKGVY 77
L + V GLPSLSR S+SF VVA GG + T PYG GG+ R+GVDASG G GVY
Sbjct: 11 LRSA*VGGLPSLSRYSSSFIVVAGGG*PLPTVGPYGFPGGLAFRDGVDASGGSGLGMGVY 190
Query: 78 QYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGALLVYNTSAL 137
V Y A+V G PI + WSP DVYAG TGLA WAVT LG+LA GAL+ Y T A+
Sbjct: 191 HLVVAYCADVFGRRPICVSLGWSPPCDVYAGRPTGLAFWAVTALGVLACGALVAYGTRAV 370
>AW424360 similar to SP|P06183|PSBR_ Photosystem II 10 kDa polypeptide
chloroplast precursor, partial (48%)
Length = 361
Score = 113 bits (282), Expect = 3e-26
Identities = 55/67 (82%), Positives = 61/67 (90%)
Frame = +1
Query: 17 SLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASGRKPRGKGV 76
++EKSSVRGLPSLSR+S+SFRVVASGGKKIKTD PYG GGM LR GVDASGRK +GKGV
Sbjct: 160 TVEKSSVRGLPSLSRNSSSFRVVASGGKKIKTDKPYGINGGMALREGVDASGRKGKGKGV 339
Query: 77 YQYVDKY 83
YQ+VDKY
Sbjct: 340 YQFVDKY 360
>AI855558 similar to SP|Q40519|PSBR_ Photosystem II 10 kDa polypeptide
chloroplast precursor (PII10). [Common tobacco], partial
(32%)
Length = 411
Score = 89.7 bits (221), Expect = 4e-19
Identities = 43/44 (97%), Positives = 43/44 (97%)
Frame = +2
Query: 96 TKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGALLVYNTSALSQ 139
TKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGALLVYNTSAL Q
Sbjct: 2 TKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGALLVYNTSALVQ 133
>TC203818 similar to UP|Q6V7X5 (Q6V7X5) 10 kDa photosystem II polypeptide,
partial (35%)
Length = 776
Score = 88.6 bits (218), Expect = 9e-19
Identities = 45/52 (86%), Positives = 50/52 (95%)
Frame = -2
Query: 1 MASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPY 52
MASSVMASV+LKPA F++EKSSVRGLPSLSR+S+SFRVVASGGKKIKTD PY
Sbjct: 157 MASSVMASVALKPAPFTVEKSSVRGLPSLSRNSSSFRVVASGGKKIKTDKPY 2
>AW781435 weakly similar to SP|P06183|PSBR_ Photosystem II 10 kDa polypeptide
chloroplast precursor, partial (42%)
Length = 322
Score = 72.0 bits (175), Expect = 9e-14
Identities = 40/96 (41%), Positives = 52/96 (53%)
Frame = +2
Query: 11 LKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASGRK 70
LKPA +L+KS V+G PS +S F+VVA GKKIK P+G G + LR GVD SGRK
Sbjct: 2 LKPALLTLKKS*VKGFPSF*GNSFYFKVVAKVGKKIKIANPFGLNGALVLREGVDPSGRK 181
Query: 71 PRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVY 106
+ K Q +Y Y ++ T D+Y
Sbjct: 182 GKEKAFSQLCTQYPGYCQWYQSLFTTTGLVSNADIY 289
>TC203853 weakly similar to UP|Q9SXF7 (Q9SXF7) Amino acid transporter-like
protein 1, partial (21%)
Length = 904
Score = 72.0 bits (175), Expect = 9e-14
Identities = 35/36 (97%), Positives = 36/36 (99%)
Frame = +1
Query: 104 DVYAGGTTGLAIWAVTLLGLLAGGALLVYNTSALSQ 139
DVYAGGTTGLAIWAVTLLGLLAGGALLVYNTSAL+Q
Sbjct: 745 DVYAGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ 852
>CD409444
Length = 653
Score = 67.8 bits (164), Expect = 2e-12
Identities = 35/41 (85%), Positives = 40/41 (97%)
Frame = +2
Query: 2 ASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASG 42
ASSVMASV+LKPA F++EKSSVRGLPSLSR+S+SFRVVASG
Sbjct: 530 ASSVMASVALKPAPFTVEKSSVRGLPSLSRNSSSFRVVASG 652
>AI965507 similar to SP|P10690|PSBR_ Photosystem II 10 kDa polypeptide
chloroplast precursor. [Spinach] {Spinacia oleracea},
partial (26%)
Length = 121
Score = 58.5 bits (140), Expect = 1e-09
Identities = 30/38 (78%), Positives = 33/38 (85%)
Frame = +2
Query: 102 TGDVYAGGTTGLAIWAVTLLGLLAGGALLVYNTSALSQ 139
T DVY+GGTTGLAI A TLL LLAGGALL YNTSA++Q
Sbjct: 8 TDDVYSGGTTGLAICAETLLDLLAGGALLDYNTSAVTQ 121
>CD409459 homologue to GP|1418984|emb| photosystem II 10 kD polypeptide
{Lycopersicon esculentum}, partial (20%)
Length = 494
Score = 51.6 bits (122), Expect = 1e-07
Identities = 25/27 (92%), Positives = 27/27 (99%)
Frame = -2
Query: 112 GLAIWAVTLLGLLAGGALLVYNTSALS 138
GLAIWAVTLLGLLAGGALLVY+TSAL+
Sbjct: 484 GLAIWAVTLLGLLAGGALLVYHTSALA 404
>AI959892 similar to SP|Q40519|PSBR_ Photosystem II 10 kDa polypeptide
chloroplast precursor (PII10). [Common tobacco],
partial (23%)
Length = 103
Score = 48.5 bits (114), Expect = 1e-06
Identities = 21/32 (65%), Positives = 26/32 (80%)
Frame = -1
Query: 61 RNGVDASGRKPRGKGVYQYVDKYGANVDGYSP 92
R+GVDASG K + KGV+Q+V KYG NV G+SP
Sbjct: 97 RDGVDASGSKGQAKGVFQFVAKYGGNVHGFSP 2
>BG511811 SP|P10690|PSBR Photosystem II 10 kDa polypeptide chloroplast
precursor. [Spinach] {Spinacia oleracea}, partial (12%)
Length = 337
Score = 36.2 bits (82), Expect = 0.005
Identities = 17/18 (94%), Positives = 18/18 (99%)
Frame = +1
Query: 122 GLLAGGALLVYNTSALSQ 139
GLLAGGALLVYNTSAL+Q
Sbjct: 4 GLLAGGALLVYNTSALAQ 57
>CA852999
Length = 545
Score = 27.7 bits (60), Expect = 1.9
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Frame = +2
Query: 21 SSVRGLPSLSRS-----SASFRVVASGGKKIKTDTPYGT 54
SS+R + S+SRS ++SFRV A K+K P GT
Sbjct: 200 SSLRSVKSVSRSFGLKSASSFRVTAMASYKVKLIGPDGT 316
>TC226242 similar to UP|Q9AUE1 (Q9AUE1) Ferredoxin, partial (59%)
Length = 450
Score = 27.7 bits (60), Expect = 1.9
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Frame = +3
Query: 21 SSVRGLPSLSRS-----SASFRVVASGGKKIKTDTPYGT 54
SS+R + S+SRS ++SFRV A K+K P GT
Sbjct: 153 SSLRSVKSVSRSFGLKSASSFRVTAMASYKVKLIGPDGT 269
>TC226241 similar to UP|FER3_MAIZE (P27788) Ferredoxin III, chloroplast
precursor (Fd III), partial (72%)
Length = 764
Score = 27.7 bits (60), Expect = 1.9
Identities = 19/51 (37%), Positives = 25/51 (48%)
Frame = +1
Query: 4 SVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGT 54
S +A+ P+ F KS R +SS+SFRV A K+K P GT
Sbjct: 157 STVATTMKCPSSFGSVKSISRSFGL--KSSSSFRVTAMASYKVKLIGPDGT 303
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.312 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,214,626
Number of Sequences: 63676
Number of extensions: 64502
Number of successful extensions: 255
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of query: 139
length of database: 12,639,632
effective HSP length: 87
effective length of query: 52
effective length of database: 7,099,820
effective search space: 369190640
effective search space used: 369190640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0403.9