BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0403.5
(44 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC214248 similar to UP|Q9FMJ2 (Q9FMJ2) Ankyrin-like protein, par... 74 2e-14
TC214376 similar to UP|Q9FMJ2 (Q9FMJ2) Ankyrin-like protein, par... 72 5e-14
BG047009 similar to GP|21928175|gb| AT5g64030/MBM17_13 {Arabidop... 62 7e-11
TC208418 weakly similar to UP|Q9FMJ2 (Q9FMJ2) Ankyrin-like prote... 52 7e-08
TC225949 similar to UP|O23292 (O23292) Ankyrin like protein, par... 44 2e-05
TC213911 similar to UP|Q9LW67 (Q9LW67) Ankyrin-like protein, par... 43 4e-05
BE474744 similar to GP|8778438|gb| F18O14.20 {Arabidopsis thalia... 42 5e-05
TC215851 similar to UP|O23292 (O23292) Ankyrin like protein, par... 42 7e-05
TC226261 similar to UP|O22285 (O22285) Expressed protein (At2g39... 42 7e-05
TC226260 similar to UP|O22285 (O22285) Expressed protein (At2g39... 41 1e-04
TC226259 similar to UP|Q94KE1 (Q94KE1) At1g77260/T14N5_19, parti... 40 2e-04
AW666199 38 0.001
TC205038 similar to UP|Q94II3 (Q94II3) ERD3 protein, partial (48%) 34 0.019
TC205037 similar to UP|Q94II3 (Q94II3) ERD3 protein, partial (83%) 33 0.033
TC204678 similar to UP|Q94EJ6 (Q94EJ6) AT4g18030/T6K21_210, part... 32 0.073
TC215262 similar to UP|Q94C19 (Q94C19) At1g26850/T2P11_4, partia... 31 0.16
TC206612 similar to GB|AAP37736.1|30725428|BT008377 At4g00740 {A... 27 1.8
BE190848 26 5.2
TC205827 25 6.8
TC211126 weakly similar to UP|Q6Z2U2 (Q6Z2U2) UbiE/COQ5 methyltr... 25 8.9
>TC214248 similar to UP|Q9FMJ2 (Q9FMJ2) Ankyrin-like protein, partial (60%)
Length = 1596
Score = 73.9 bits (180), Expect = 2e-14
Identities = 34/41 (82%), Positives = 36/41 (86%)
Frame = +3
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHKLPEDVEICNGMSSL 41
GKLLLELNRVLRPGGFFVWS TP+Y KLPEDVEI N M +L
Sbjct: 429 GKLLLELNRVLRPGGFFVWSATPIYQKLPEDVEIWNEMKAL 551
>TC214376 similar to UP|Q9FMJ2 (Q9FMJ2) Ankyrin-like protein, partial (62%)
Length = 2142
Score = 72.4 bits (176), Expect = 5e-14
Identities = 33/41 (80%), Positives = 35/41 (84%)
Frame = +3
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHKLPEDVEICNGMSSL 41
GKLLLELNRVLRPGGFFVWS TP+Y KLPEDVEI M +L
Sbjct: 528 GKLLLELNRVLRPGGFFVWSATPIYQKLPEDVEIWKAMKTL 650
>BG047009 similar to GP|21928175|gb| AT5g64030/MBM17_13 {Arabidopsis
thaliana}, partial (7%)
Length = 181
Score = 62.0 bits (149), Expect = 7e-11
Identities = 29/41 (70%), Positives = 33/41 (79%)
Frame = +2
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHKLPEDVEICNGMSSL 41
GKLLLELNRVLRPGGFFV S TP+Y KLP+ V IC + +L
Sbjct: 20 GKLLLELNRVLRPGGFFVSSATPIYXKLPQHV*ICKAIKTL 142
>TC208418 weakly similar to UP|Q9FMJ2 (Q9FMJ2) Ankyrin-like protein, partial
(13%)
Length = 700
Score = 52.0 bits (123), Expect = 7e-08
Identities = 23/38 (60%), Positives = 26/38 (67%)
Frame = +2
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHKLPEDVEICNGM 38
GK L ELNR+LRPGGFF WS TPVY D ++ N M
Sbjct: 86 GKPLYELNRILRPGGFFAWSATPVYRDDERDQKVWNAM 199
>TC225949 similar to UP|O23292 (O23292) Ankyrin like protein, partial (49%)
Length = 1729
Score = 43.5 bits (101), Expect = 2e-05
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = +2
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHKLPEDVEICNGMSSLL 42
G LLLEL+R+LRPGG+F +S+ Y + ED+ I MS L+
Sbjct: 446 GLLLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSDLV 571
>TC213911 similar to UP|Q9LW67 (Q9LW67) Ankyrin-like protein, partial (29%)
Length = 537
Score = 42.7 bits (99), Expect = 4e-05
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = +2
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHKLPEDVEICNGMSSLL 42
G LLLEL+R+LRPGG+F +S+ Y + ED I MS+L+
Sbjct: 167 GILLLELDRILRPGGYFAYSSPEAYAQDEEDRRIWKEMSALV 292
>BE474744 similar to GP|8778438|gb| F18O14.20 {Arabidopsis thaliana}, partial
(16%)
Length = 420
Score = 42.4 bits (98), Expect = 5e-05
Identities = 20/43 (46%), Positives = 29/43 (66%)
Frame = +2
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHKLPEDVEICNGMSSLLC 43
GKLLLE+NR+LRPGG+F+ ST H E+ E +++ +C
Sbjct: 119 GKLLLEMNRILRPGGYFIMSTK---HDSIEEEEAMTTLTASIC 238
>TC215851 similar to UP|O23292 (O23292) Ankyrin like protein, partial (43%)
Length = 1511
Score = 42.0 bits (97), Expect = 7e-05
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = +2
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHKLPEDVEICNGMSSLL 42
G LLLEL+R+LRPGG+F +S+ Y + ED I MS+L+
Sbjct: 365 GILLLELDRLLRPGGYFAYSSPEAYAQDEEDRRIWREMSTLV 490
>TC226261 similar to UP|O22285 (O22285) Expressed protein
(At2g39750/T5I7.5), partial (45%)
Length = 1329
Score = 42.0 bits (97), Expect = 7e-05
Identities = 22/46 (47%), Positives = 29/46 (62%), Gaps = 3/46 (6%)
Frame = +3
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVY---HKLPEDVEICNGMSSLLC 43
G LLLE+NR+LR GG+FVW+ PVY L E E +++ LC
Sbjct: 33 GILLLEVNRMLRAGGYFVWAAQPVYKHEEVLEEQWEEMLNLTTRLC 170
>TC226260 similar to UP|O22285 (O22285) Expressed protein (At2g39750/T5I7.5),
partial (79%)
Length = 2458
Score = 41.2 bits (95), Expect = 1e-04
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +2
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVY 25
G LLLE+NR+LR GG+FVW+ PVY
Sbjct: 896 GILLLEVNRMLRAGGYFVWAAQPVY 970
>TC226259 similar to UP|Q94KE1 (Q94KE1) At1g77260/T14N5_19, partial (48%)
Length = 1001
Score = 40.4 bits (93), Expect = 2e-04
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +2
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVY 25
G LLLE NR+LR GG+FVW+ PVY
Sbjct: 191 GILLLEANRLLRAGGYFVWAAQPVY 265
>AW666199
Length = 469
Score = 37.7 bits (86), Expect = 0.001
Identities = 18/42 (42%), Positives = 29/42 (68%)
Frame = +2
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHKLPEDVEICNGMSSLL 42
G LLLEL+R+L+P G+F +S+ Y + ED++I +S L+
Sbjct: 35 GILLLELDRLLKPRGYFTYSSPETYTQDKEDLKILKEISYLI 160
>TC205038 similar to UP|Q94II3 (Q94II3) ERD3 protein, partial (48%)
Length = 889
Score = 33.9 bits (76), Expect = 0.019
Identities = 14/27 (51%), Positives = 21/27 (76%)
Frame = +2
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHK 27
G LLE++R+LRPGGF+V S P+ ++
Sbjct: 554 GVYLLEIHRILRPGGFWVLSGPPINYE 634
>TC205037 similar to UP|Q94II3 (Q94II3) ERD3 protein, partial (83%)
Length = 2018
Score = 33.1 bits (74), Expect = 0.033
Identities = 14/27 (51%), Positives = 21/27 (76%)
Frame = +3
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHK 27
G L+E++R+LRPGGF+V S PV ++
Sbjct: 612 GIYLMEIHRILRPGGFWVLSGPPVNYE 692
Score = 25.0 bits (53), Expect = 8.9
Identities = 9/13 (69%), Positives = 13/13 (99%)
Frame = +3
Query: 3 LLLELNRVLRPGG 15
+LLE++R+LRPGG
Sbjct: 1377 VLLEMDRILRPGG 1415
>TC204678 similar to UP|Q94EJ6 (Q94EJ6) AT4g18030/T6K21_210, partial (91%)
Length = 2339
Score = 32.0 bits (71), Expect = 0.073
Identities = 13/27 (48%), Positives = 20/27 (73%)
Frame = +1
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHK 27
G L+E++RVLRPGG+++ S P+ K
Sbjct: 961 GMYLMEVDRVLRPGGYWILSGPPINWK 1041
>TC215262 similar to UP|Q94C19 (Q94C19) At1g26850/T2P11_4, partial (97%)
Length = 2422
Score = 30.8 bits (68), Expect = 0.16
Identities = 13/27 (48%), Positives = 20/27 (73%)
Frame = +3
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHK 27
G ++E++RVLRPGG++V S P+ K
Sbjct: 948 GIYMMEVDRVLRPGGYWVLSGPPINWK 1028
>TC206612 similar to GB|AAP37736.1|30725428|BT008377 At4g00740 {Arabidopsis
thaliana;} , partial (98%)
Length = 2328
Score = 27.3 bits (59), Expect = 1.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 5 LELNRVLRPGGFFVWSTTPV 24
+E++R+LRPGG+ V S PV
Sbjct: 1013 IEVDRLLRPGGYLVISGPPV 1072
>BE190848
Length = 392
Score = 25.8 bits (55), Expect = 5.2
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +3
Query: 2 KLLLELNRVLRPGGFFVWST---TPVYHKLPEDVEICNGMSS 40
KLL ++ +L+PGG+F+ T + ++ K +VE + SS
Sbjct: 150 KLLHNVSSLLKPGGYFLGITPDSSTIWAKYQRNVEAYHNKSS 275
>TC205827
Length = 2695
Score = 25.4 bits (54), Expect = 6.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 4 LLELNRVLRPGGFFVWSTTPVYHKL 28
L E+ RVL+PGG FV T H L
Sbjct: 481 LSEVKRVLKPGGKFVCLTLAESHVL 555
>TC211126 weakly similar to UP|Q6Z2U2 (Q6Z2U2) UbiE/COQ5
methyltransferase-like, partial (59%)
Length = 900
Score = 25.0 bits (53), Expect = 8.9
Identities = 10/16 (62%), Positives = 13/16 (80%)
Frame = +3
Query: 4 LLELNRVLRPGGFFVW 19
L E+ RVLRPGG +V+
Sbjct: 285 LKEVRRVLRPGGLYVF 332
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.325 0.146 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,796,821
Number of Sequences: 63676
Number of extensions: 30104
Number of successful extensions: 193
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of query: 44
length of database: 12,639,632
effective HSP length: 20
effective length of query: 24
effective length of database: 11,366,112
effective search space: 272786688
effective search space used: 272786688
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0403.5