BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0400a.6
(619 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203888 homologue to UP|DHSA_ARATH (O82663) Succinate dehydroge... 244 8e-65
TC203715 homologue to UP|DHSA_ARATH (O82663) Succinate dehydroge... 86 6e-17
BF070149 homologue to SP|O82663|DHSA Succinate dehydrogenase [ub... 42 8e-04
TC227571 homologue to UP|O65808 (O65808) Magnesium chelatase sub... 33 0.49
AI444066 similar to GP|9294409|dbj polygalacturonase inhibitor-l... 31 1.4
TC215216 similar to UP|Q8LPT9 (Q8LPT9) R1, partial (44%) 29 5.4
TC204931 UP|O65808 (O65808) Magnesium chelatase subunit , complete 29 5.4
TC209376 UP|Q9SLW5 (Q9SLW5) Protoporphyrinogen IX oxidase, complete 29 7.1
TC215438 UP|GSHC_SOYBN (P48640) Glutathione reductase, chloropla... 29 7.1
TC203696 similar to UP|DHSA_ARATH (O82663) Succinate dehydrogena... 29 7.1
BE611303 weakly similar to PIR|T02949|T029 H+-transporting two-s... 28 9.2
>TC203888 homologue to UP|DHSA_ARATH (O82663) Succinate dehydrogenase
[ubiquinone] flavoprotein subunit, mitochondrial (FP)
(Flavoprotein subunit of complex II) , partial (94%)
Length = 2344
Score = 244 bits (623), Expect = 8e-65
Identities = 195/597 (32%), Positives = 285/597 (47%), Gaps = 42/597 (7%)
Frame = +3
Query: 59 FDFVVIGSGIAGLRYALEVAKYG-SVAVITKAESHECNTNYAQGGVSAVL--CPSDSVEN 115
+D VV+G+G AGLR A+ ++++G + A ITK +T AQGG++A L D
Sbjct: 309 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRW 488
Query: 116 HMKDTIVAGAYLCDEESVRVVCTEGPERVRELIAMGASFDHGEDGNLHLMREGGHSHR-- 173
HM DT+ +L D+++++ +C E P+ V EL G F EDG ++ GG S
Sbjct: 489 HMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNYG 668
Query: 174 ------RIVHAADMTGKEIERALLKAAVNNPNIFVFEHHFAIDLLTSQDGSDIICLGADI 227
R AAD TG + L A+ + F F +FA+DL+ + DG+ C G
Sbjct: 669 KGGQAYRCACAADRTGHALLHTLYGQAMRHNTQF-FVEYFALDLVMNSDGT---CQGVIA 836
Query: 228 LNTETLEVVRFLSKVTLLASGGAGHIYPKTTNPLVATGDGIAMAHRAQAVISNMEFVQFH 287
LN E + RF + T+LA+GG G Y T+ TGDG AM RA + ++EFVQFH
Sbjct: 837 LNMEDGTLHRFKAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGIPLEDLEFVQFH 1016
Query: 288 PTALADEGLPIKPTKLRDNAFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVA 346
PT + G LITE RG+GGIL N ERFM Y A +LA RDVV+
Sbjct: 1017PTGIYGAGC------------LITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVS 1160
Query: 347 RSIDDQLKKRD-----DKYVLLDISHKPKEEILSHFPNIASFCLQY-GLDITRHPIPVVP 400
R++ ++++ ++ L ++H P + + P I+ + G+D+T+ PIPV+P
Sbjct: 1161RAMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLP 1340
Query: 401 AAHYMCGGVRAGLEGE----------TNVQGLYVAGEVACTGLHGANRLASNSLLEALVF 450
HY GG+ GE V GL AGE AC +HGANRL +NSLL+ +VF
Sbjct: 1341TVHYNMGGIPTNHYGEVVTIKGDNPDAVVPGLMAAGETACASVHGANRLGANSLLDIVVF 1520
Query: 451 AR----RAVQPSVDQMKSSSLDLTASNLWPRPIVPLSLESDVMNKILSL-TKELRKELQS 505
R R + K L+ A R I L + N SL T ++R +Q
Sbjct: 1521GRACANRVAEIRRPGEKQKPLEKDAGQ---RTIAWL---DKLRNSNGSLPTSQIRLNMQR 1682
Query: 506 IMWYYVGIVRSTMRLETAELKIGNLEAKWEEYLFQHG---------WKPTMVAPEICEMR 556
+M + R+ ET E ++ WE + H W ++ E E+
Sbjct: 1683VMQTNAAVFRTQ---ETLEEGCQLIDKTWESF---HDVQVKDRSLIWNSDLI--ETIELE 1838
Query: 557 NLFCCAKLVVSSALSRHESRGLHYTIDFPYLEESERLPTIIFPSSRVKSTRSFRQLH 613
NL A + + SA +R ESRG H DF ++ + + K +R +H
Sbjct: 1839NLLINACITMYSAEARKESRGAHAREDFKVRDDGNWMKHTVGFWENEKVRLDYRPVH 2009
>TC203715 homologue to UP|DHSA_ARATH (O82663) Succinate dehydrogenase
[ubiquinone] flavoprotein subunit, mitochondrial (FP)
(Flavoprotein subunit of complex II) , partial (41%)
Length = 1172
Score = 85.5 bits (210), Expect = 6e-17
Identities = 73/250 (29%), Positives = 109/250 (43%), Gaps = 24/250 (9%)
Frame = +2
Query: 388 GLDITRHPIPVVPAAHYMCGGVRAGLEGETN----------VQGLYVAGEVACTGLHGAN 437
G+D+T+ PIPV+P HY GG+ GE V GL AGE AC +HGAN
Sbjct: 20 GVDVTKEPIPVLPTVHYNMGGIPTNHHGEVITIKGDDPDAVVPGLMAAGETACASVHGAN 199
Query: 438 RLASNSLLEALVFAR----RAVQPSVDQMKSSSLDLTASNLWPRPIVPLSLESDVMNKIL 493
RL +NSLL+ +VF R R + K L+ A + ++ + N
Sbjct: 200 RLGANSLLDIVVFGRACANRVSEIQRPGEKQKPLEKDAG------MKTIAWLDKLRNSNG 361
Query: 494 SL-TKELRKELQSIMWYYVGIVRSTMRLETAELKIGNLEAKWEEYLFQHG---------W 543
SL T ++R +Q IM + R+ ET E ++ WE + H W
Sbjct: 362 SLPTSKIRLNMQRIMQNNAAVFRTQ---ETLEEGCQLIDKAWESF---HDVKLKDRSLIW 523
Query: 544 KPTMVAPEICEMRNLFCCAKLVVSSALSRHESRGLHYTIDFPYLEESERLPTIIFPSSRV 603
++ E E+ NL A + + SA +R ESRG H DF ++ + + +
Sbjct: 524 NSDLI--ETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDEKWMKHTLGYWDNE 697
Query: 604 KSTRSFRQLH 613
K +R +H
Sbjct: 698 KVRLDYRPVH 727
>BF070149 homologue to SP|O82663|DHSA Succinate dehydrogenase [ubiquinone]
flavoprotein subunit mitochondrial (EC 1.3.5.1) (FP),
partial (16%)
Length = 402
Score = 42.0 bits (97), Expect = 8e-04
Identities = 26/84 (30%), Positives = 33/84 (38%), Gaps = 10/84 (11%)
Frame = +2
Query: 393 RHPIPVVPAAHYMCGGVRAGLEGE----------TNVQGLYVAGEVACTGLHGANRLASN 442
+ PIPV+P HY GG+ GE V GL AGE AC +HG
Sbjct: 2 KEPIPVLPTVHYNMGGIPTNHHGEVITIKGDDPDAVVPGLMAAGETACASVHGCK*ALVQ 181
Query: 443 SLLEALVFARRAVQPSVDQMKSSS 466
L+F VQ + K +
Sbjct: 182 IHFLTLLFLVELVQIEFQKSKGQA 253
>TC227571 homologue to UP|O65808 (O65808) Magnesium chelatase subunit ,
partial (41%)
Length = 2033
Score = 32.7 bits (73), Expect = 0.49
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -2
Query: 356 RDDKYVL-LDISHKPKEEILSHFPNIASFCLQYGLDITRHPIPVVPAAHYMCG 407
RD YVL L + H + +FP ++FCL L T + + +CG
Sbjct: 691 RDSPYVLILSVPHNTSATVSGYFPPFSAFCLSINLSTTILALCIAAVVGIVCG 533
>AI444066 similar to GP|9294409|dbj polygalacturonase inhibitor-like protein
{Arabidopsis thaliana}, partial (27%)
Length = 336
Score = 31.2 bits (69), Expect = 1.4
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +3
Query: 508 WYYVGIVRSTMRLETAELKIGNLEAKWEEYLFQHGWKPTMVAPEICEMRNL 558
WY + R+T R+ L+ G + +E+ F+ G+ ++PEIC++ +L
Sbjct: 93 WYGISCDRNTHRVAEISLRAGPVYTTFEKP-FRPGYMSGSISPEICKLTHL 242
>TC215216 similar to UP|Q8LPT9 (Q8LPT9) R1, partial (44%)
Length = 2282
Score = 29.3 bits (64), Expect = 5.4
Identities = 20/79 (25%), Positives = 38/79 (47%)
Frame = +3
Query: 444 LLEALVFARRAVQPSVDQMKSSSLDLTASNLWPRPIVPLSLESDVMNKILSLTKELRKEL 503
LLE L+ AR+ +QPS+ + +S DL + ++L+S V + +EL
Sbjct: 69 LLEGLLEARQELQPSLSKSQSRLKDLI--------FLDVALDSTVRTAVERSYEELNNAG 224
Query: 504 QSIMWYYVGIVRSTMRLET 522
+ Y++ +V + L +
Sbjct: 225 PEKIMYFISLVLENLALSS 281
>TC204931 UP|O65808 (O65808) Magnesium chelatase subunit , complete
Length = 4482
Score = 29.3 bits (64), Expect = 5.4
Identities = 14/38 (36%), Positives = 19/38 (49%), Gaps = 1/38 (2%)
Frame = -3
Query: 356 RDDKYVL-LDISHKPKEEILSHFPNIASFCLQYGLDIT 392
RD YVL L + H + +FP ++FCL L T
Sbjct: 3271 RDSPYVLILSVPHNTSAIVSGYFPPFSAFCLSINLSTT 3158
>TC209376 UP|Q9SLW5 (Q9SLW5) Protoporphyrinogen IX oxidase, complete
Length = 1733
Score = 28.9 bits (63), Expect = 7.1
Identities = 13/45 (28%), Positives = 25/45 (54%)
Frame = +3
Query: 46 ISSSCKKDDPTKYFDFVVIGSGIAGLRYALEVAKYGSVAVITKAE 90
++SS D+P V+G+G++GL A ++ +G + +AE
Sbjct: 24 MASSATDDNPRSVKRVAVVGAGVSGLAAAYKLKSHGLDVTVFEAE 158
>TC215438 UP|GSHC_SOYBN (P48640) Glutathione reductase, chloroplast precursor
(GR) (GRase) , complete
Length = 2144
Score = 28.9 bits (63), Expect = 7.1
Identities = 25/77 (32%), Positives = 35/77 (44%), Gaps = 11/77 (14%)
Frame = +2
Query: 20 VSKVLQIHKCQFSGTPLYKN-------RKLVKVISSSCKKDDPTKY---FDFVVIGSGIA 69
++K L + + F PL K+ R+ V + S DP FD IG+G
Sbjct: 110 IAKALPLSRPSFLSLPLPKSLLSLSTRRRTFIVRAESQNGADPVPAHYDFDLFTIGAGSG 289
Query: 70 GLRYALEVAKYG-SVAV 85
G+R A A YG SVA+
Sbjct: 290 GVRAARFAANYGASVAI 340
>TC203696 similar to UP|DHSA_ARATH (O82663) Succinate dehydrogenase
[ubiquinone] flavoprotein subunit, mitochondrial (FP)
(Flavoprotein subunit of complex II) , partial (17%)
Length = 681
Score = 28.9 bits (63), Expect = 7.1
Identities = 18/63 (28%), Positives = 28/63 (43%)
Frame = +3
Query: 551 EICEMRNLFCCAKLVVSSALSRHESRGLHYTIDFPYLEESERLPTIIFPSSRVKSTRSFR 610
E E+ NL A + + SA +R ESRG H DF ++ + + K +R
Sbjct: 174 ETIELENLLINACITMYSAEARKESRGAHAREDFKVRDDGSWMKHTVGFWENEKVRLDYR 353
Query: 611 QLH 613
+H
Sbjct: 354 PVH 362
>BE611303 weakly similar to PIR|T02949|T029 H+-transporting two-sector ATPase
(EC 3.6.3.14) chain I - common tobacco chloroplast,
partial (51%)
Length = 325
Score = 28.5 bits (62), Expect = 9.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 461 QMKSSSLDLTASNLWPRPIVPLSLE 485
Q+ S L+L + LWP P++ +SLE
Sbjct: 197 QLSLSGLELFPAVLWPHPVIRMSLE 123
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,098,230
Number of Sequences: 63676
Number of extensions: 372211
Number of successful extensions: 1570
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1560
length of query: 619
length of database: 12,639,632
effective HSP length: 103
effective length of query: 516
effective length of database: 6,081,004
effective search space: 3137798064
effective search space used: 3137798064
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0400a.6