TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0399.4
         (1400 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete             697  0.0
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co...   693  0.0
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro...   240  4e-63
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ...   177  2e-44
BI784757                                                              174  2e-43
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)       157  3e-38
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi...   144  3e-34
TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement p...   143  6e-34
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V...   132  1e-30
BU549979                                                              130  3e-30
AI959950                                                              129  7e-30
BG508993                                                              129  9e-30
TC232995                                                              127  3e-29
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti...   125  1e-28
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag...   125  1e-28
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti...   108  3e-28
BI321712                                                              121  2e-27
TC213445                                                               91  2e-26
CO982036                                                              117  5e-26
CO981347                                                               94  5e-26

>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
          Length = 4731

 Score =  697 bits (1799), Expect = 0.0
 Identities = 436/1314 (33%), Positives = 703/1314 (53%), Gaps = 33/1314 (2%)
 Frame = +1

Query: 113  LQTMRRQFELLQMET-NESIADFFNRIISLTNLMKACGEKM-TDQAIVEKVL----RTLT 166
            L+  R+   + Q +T +E  +D    + +LT + +   +   TD  I    L    R L 
Sbjct: 955  LKKHRKGLSVCQSDTESEQESDSDRDVNALTGIFETAEDSSDTDSEITFDELAASYRKLC 1134

Query: 167  PKFDHVVVAIEESKKLENLKIEELQGSLEAHEQRIVERSS*----KSKSTDQALQAQTSK 222
             K + ++    + KK+    I +L+   EAH++ I E         SK  +     +   
Sbjct: 1135 IKSEKILQQEAQLKKV----IADLEAEKEAHKEEISELKGEVGFLNSKLENMTKSIKMLN 1302

Query: 223  KGGFS-------GK--GGYRGKGKSKDYKNSS*KQSQFQNQEDHDQPESSSRRGGGSSNY 273
            KG  +       GK  G  RG G +      +   ++F   ++      S  R   S ++
Sbjct: 1303 KGSDTLDEVLLLGKNAGNQRGLGFNPKSAGRT-TMTEFVPAKNRTGATMSQHR---SRHH 1470

Query: 274  KGGKRKFDRKKIRCFNCNKIGHFSSECKAPSGGDTRGRTSDEANLAKEGSITNEEPVTLM 333
               ++K  RKK RC  C K GH    C    G    G  S  +   K   +   + V+L+
Sbjct: 1471 GMQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSNSR-KKMMWVPKHKAVSLV 1647

Query: 334  MVTEEGESNPATCNITDEEHVTLMMVTKEGGNYPGTWYLDSGCSNHMTGNKEWLINLDEN 393
            +                  H +L    KE       WYLDSGCS HMTG KE+L+N++  
Sbjct: 1648 V------------------HTSLRASAKED------WYLDSGCSRHMTGVKEFLLNIEPC 1755

Query: 394  KKSRVRFADDRFISAEGIGDVLVKREDGKDVVISEVLYVPGMKTNLISMGQLLEKDFSMS 453
              S V F D       G+G ++    DG    +++VL V G+  NLIS+ QL ++ F+++
Sbjct: 1756 STSYVTFGDGSKGKIIGMGKLV---HDGLPS-LNKVLLVKGLTANLISISQLCDEGFNVN 1923

Query: 454  MKKRHLEVFDPNERKIMKVPLTPNRTF--QVKLTAIDSQCLTAELEDNSWLWHQRFGHLN 511
              K    V +     +MK   + +  +    + T+  S CL+++ ED   +WHQRFGHL+
Sbjct: 1924 FTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSK-EDEVRIWHQRFGHLH 2100

Query: 512  FKDLSSLKSKDMVHGLSQIKLPS-KVCENCLVSKQPRAPFSSFTPTRSTAVLDVIYSDVC 570
             + +  +  K  V G+  +K+   ++C  C + KQ +          ++ VL++++ D+ 
Sbjct: 2101 LRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLM 2280

Query: 571  GPFETASIGGNKYFASFIDEYSRKMWVYLLKTKSEVFSVFKVFKTMAKKQSGRSIKVLRT 630
            GP +  S+GG +Y    +D++SR  WV  ++ KSE F VFK      +++    IK +R+
Sbjct: 2281 GPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQREKDCVIKRIRS 2460

Query: 631  DEGGEYCSNEMSNFCEENGILHEVTAPYTPQHNGVAERRNRTVLNMVRSMLKGKSLPHRF 690
            D G E+ ++  + FC   GI HE +A  TPQ NG+ ER+NRT+    R ML  K LP+  
Sbjct: 2461 DHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNL 2640

Query: 691  CGEAVMTAVYVLNLCPTKSVDSQVPEAVWSGRKPSVKHLRIFGCLCHKHIPDQRRRKLDD 750
              EA+ TA Y+ N    +         +W GRKPSVKH  IFG  C+     ++RRK+D 
Sbjct: 2641 WAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDP 2820

Query: 751  KSETMIFIGYSSTG-AYKLYNPRTSQVEFSRDVVFEEHSAWKGK--ETMVVNDSMQRVNL 807
            KS+  IF+GYS+   AY+++N RT  V  S +VV ++ S  + K  E  V        + 
Sbjct: 2821 KSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPARKKDVEEDVRTSGDNVADA 3000

Query: 808  DLDHDDSEGIESAV----VDVPGTSQNQNQIQVHNPRPI----RTKTLPARFSDYQLIAE 859
                +++E  +SA     ++ P   ++  +IQ  +P+ +      + +  R  + ++++ 
Sbjct: 3001 AKSGENAENSDSATDESNINQPD-KRSSTRIQKMHPKELIIGDPNRGVTTRSREVEIVSN 3177

Query: 860  TEFNSDGDMIHMALLADANPVKFEEAIKNKTWRLAMKEELASIERNKTWDLVDLPANKTP 919
            + F           ++   P   +EA+ ++ W  AM+EEL   +RN+ W+LV  P     
Sbjct: 3178 SCF-----------VSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNV 3324

Query: 920  ISVKWVFKVKLNPDGSISKHKARLVVRGFMQRGGLDYSEVFAPVARLETVRMIVALASWK 979
            I  KW+FK K N +G I+++KARLV +G+ Q  G+D+ E FAPVARLE++R+++ +A   
Sbjct: 3325 IGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACIL 3504

Query: 980  NWDLWQLDVKSAFLNGPLEEEVYITQPPGFEIKGSEHKVLKLRKALYGLKQAPRAWNKRI 1039
             + L+Q+DVKSAFLNG L EEVY+ QP GF        V +L+KALYGLKQAPRAW +R+
Sbjct: 3505 KFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERL 3684

Query: 1040 DTFLSQTGFHKCSVEHGVYVKSCDSGGVLLLCLYVDDLLITGSSYSKIQAVKRSLNNEFE 1099
              FL+Q G+ K  ++  ++VK  D+  +++  +YVDD++  G S   ++   + + +EFE
Sbjct: 3685 TEFLTQQGYRKGGIDKTLFVKQ-DAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFE 3861

Query: 1100 MTDLGKLSYFLGIEFVQTGEGILMHQRKYILEVLKRFNLLSCNPAETPVEGNLKLGLCEE 1159
            M+ +G+L+YFLG++  Q  + I + Q +Y   ++K+F + + +   TP   +LKL   E 
Sbjct: 3862 MSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEA 4041

Query: 1160 EAEVDSTMFRQLVGCLRFICHSRLEISYGVGLVSRFMSCPRQSHLAAAKRILRYLKGTPN 1219
               VD +++R ++G L ++  SR +I+Y VG+ +R+ + P+ SHL   KRIL+Y+ GT +
Sbjct: 4042 GTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSD 4221

Query: 1220 HGVFFPKHLPSQKEDGNLHLVAYTDSDWCGDQVDRRSTMGYVFFFGKAPISWSSKKQAAV 1279
            +G+ +           N  LV Y D+DW G   DR+ST G  F+ G   ISW SKKQ  V
Sbjct: 4222 YGIMY-------CHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCV 4380

Query: 1280 ALSTCEAEYIAACSAACQGLWIQALLEELGLKTDEAVQLMVDNKSAIDLAKNPVSHGRSK 1339
            +LST EAEYIAA S+  Q +W++ +L+E  ++ D  + L  DN SAI+++KNPV H R+K
Sbjct: 4381 SLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQD-VMTLYCDNMSAINISKNPVQHSRTK 4557

Query: 1340 HIETKYHFLRDQVSKEKIKLQHCGTDLQIADVFTKPLKADRFKTLKKMMNVLVL 1393
            HI+ ++H++RD V  + I L+H  T+ QIAD+FTK L A++F+ L+  + + +L
Sbjct: 4558 HIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKLGICLL 4719



 Score = 90.5 bits (223), Expect = 5e-18
 Identities = 61/201 (30%), Positives = 98/201 (48%), Gaps = 7/201 (3%)
 Frame = +1

Query: 107 KLKKVKLQTMRRQFELLQMETNESIADFFNRIISLTNLMKACGEKMTDQAIVEKVLRTLT 166
           K+K  +LQ +  +FE L+M+  E I DF   I+ + N   A GE++TD+ +V K+LR+L 
Sbjct: 361 KVKMSRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLP 540

Query: 167 PKFDHVVVAIEESKKLENLKIEELQGSLEAHEQRIVERSS*KSK-----STDQALQAQ-- 219
            +FD  V AIEE++ + N++++EL GSL+  E  + +R+  KSK     S D+  + +  
Sbjct: 541 KRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSNDEGEEDEYD 720

Query: 220 TSKKGGFSGKGGYRGKGKSKDYKNSS*KQSQFQNQEDHDQPESSSRRGGGSSNYKGGKRK 279
                G +      GK  +K            + Q+ H Q      R G     +   + 
Sbjct: 721 LDTDEGLTNAVVLLGKQFNKVLNRMD------KRQKPHVQNIPFDIRKGSKYQKRSDVKP 882

Query: 280 FDRKKIRCFNCNKIGHFSSEC 300
              K I+C  C   GH  +EC
Sbjct: 883 SHSKGIQCHGCEGYGHIIAEC 945


>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
          Length = 4734

 Score =  693 bits (1788), Expect = 0.0
 Identities = 419/1256 (33%), Positives = 678/1256 (53%), Gaps = 21/1256 (1%)
 Frame = +1

Query: 159  EKVLRTLTPKFDHVVVAIEESKKLENLKIEELQGS---LEAHEQRIVERSS*KSKSTDQA 215
            EK+L+    +   V+  +E  K+    +I EL+G    L +  + + +     +K +D  
Sbjct: 1147 EKILQQ-EAQLKKVIANLEAEKEAHEEEISELKGEVGFLNSKLENMTKSIKMLNKGSDML 1323

Query: 216  LQA-QTSKKGGFSGKGGYRGKGKSKDYKNSS*KQSQFQNQEDHDQPESSSRRGGGSSNYK 274
             +  Q  K  G     G+  K   +         ++F   ++      S  R   S ++ 
Sbjct: 1324 DEVLQLGKNVGNQRGLGFNHKSAGRT------TMTEFVPAKNSTGATMSQHR---SRHHG 1476

Query: 275  GGKRKFDRKKIRCFNCNKIGHFSSECKAPSGGDTRGRTSDEANLAKEGSITNEEPVTLMM 334
              ++K  RKK RC  C K GH    C    G    G  S  +   K   +   + V+L++
Sbjct: 1477 TQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSSSG-RKMMWVPKHKIVSLVV 1653

Query: 335  VTEEGESNPATCNITDEEHVTLMMVTKEGGNYPGTWYLDSGCSNHMTGNKEWLINLDENK 394
                              H +L    KE       WYLDSGCS HMTG KE+L+N++   
Sbjct: 1654 ------------------HTSLRASAKED------WYLDSGCSRHMTGVKEFLVNIEPCS 1761

Query: 395  KSRVRFADDRFISAEGIGDVLVKREDGKDVVISEVLYVPGMKTNLISMGQLLEKDFSMSM 454
             S V F D       G+G ++    DG    +++VL V G+  NLIS+ QL ++ F+++ 
Sbjct: 1762 TSYVTFGDGSKGKITGMGKLV---HDGLPS-LNKVLLVKGLTANLISISQLCDEGFNVNF 1929

Query: 455  KKRHLEVFDPNERKIMKVPLTPNRTF--QVKLTAIDSQCLTAELEDNSWLWHQRFGHLNF 512
             K    V +     +MK   + +  +    + T+  S CL ++ ED   +WHQRFGHL+ 
Sbjct: 1930 TKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLFSK-EDEVKIWHQRFGHLHL 2106

Query: 513  KDLSSLKSKDMVHGLSQIKLPS-KVCENCLVSKQPRAPFSSFTPTRSTAVLDVIYSDVCG 571
            + +  +  K  V G+  +K+   ++C  C + KQ +          ++ VL++++ D+ G
Sbjct: 2107 RGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMG 2286

Query: 572  PFETASIGGNKYFASFIDEYSRKMWVYLLKTKSEVFSVFKVFKTMAKKQSGRSIKVLRTD 631
            P +  S+GG +Y    +D++SR  WV  ++ KS+ F VFK      +++    IK +R+D
Sbjct: 2287 PMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSD 2466

Query: 632  EGGEYCSNEMSNFCEENGILHEVTAPYTPQHNGVAERRNRTVLNMVRSMLKGKSLPHRFC 691
             G E+ +++ + FC   GI HE +A  TPQ NG+ ER+NRT+    R ML  K LP+   
Sbjct: 2467 HGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLW 2646

Query: 692  GEAVMTAVYVLNLCPTKSVDSQVPEAVWSGRKPSVKHLRIFGCLCHKHIPDQRRRKLDDK 751
             EA+ TA Y+ N    +         +W GRKP+VKH  IFG  C+     ++RRK+D K
Sbjct: 2647 AEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPK 2826

Query: 752  SETMIFIGYSSTG-AYKLYNPRTSQVEFSRDVVFEEHSAWKGKETMVVNDSMQRVNLDLD 810
            S+  IF+GYS+   AY+++N RT  V  S +VV ++ +  + K+     +   R + D  
Sbjct: 2827 SDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTPARKKDV----EEDVRTSGDNV 2994

Query: 811  HDDSEGIESA-----VVDVPGTSQNQNQ----IQVHNPRPI----RTKTLPARFSDYQLI 857
             D ++  E+A       D P  +Q   +    IQ  +P+ +      + +  R  + +++
Sbjct: 2995 ADTAKSAENAENSDSATDEPNINQPDKRPSIRIQKMHPKELIIGDPNRGVTTRSREIEIV 3174

Query: 858  AETEFNSDGDMIHMALLADANPVKFEEAIKNKTWRLAMKEELASIERNKTWDLVDLPANK 917
            + + F           ++   P   +EA+ ++ W  AM+EEL   +RN+ W+LV  P   
Sbjct: 3175 SNSCF-----------VSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGT 3321

Query: 918  TPISVKWVFKVKLNPDGSISKHKARLVVRGFMQRGGLDYSEVFAPVARLETVRMIVALAS 977
              I  KW+FK K N +G I+++KARLV +G+ Q  G+D+ E FAPVARLE++R+++ +A 
Sbjct: 3322 NVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVAC 3501

Query: 978  WKNWDLWQLDVKSAFLNGPLEEEVYITQPPGFEIKGSEHKVLKLRKALYGLKQAPRAWNK 1037
               + L+Q+DVKSAFLNG L EE Y+ QP GF        V +L+KALYGLKQAPRAW +
Sbjct: 3502 ILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYE 3681

Query: 1038 RIDTFLSQTGFHKCSVEHGVYVKSCDSGGVLLLCLYVDDLLITGSSYSKIQAVKRSLNNE 1097
            R+  FL+Q G+ K  ++  ++VK  D+  +++  +YVDD++  G S   ++   + + +E
Sbjct: 3682 RLTEFLTQQGYRKGGIDKTLFVKQ-DAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSE 3858

Query: 1098 FEMTDLGKLSYFLGIEFVQTGEGILMHQRKYILEVLKRFNLLSCNPAETPVEGNLKLGLC 1157
            FEM+ +G+L+YFLG++  Q  + I + Q KY   ++K+F + + +   TP   +LKL   
Sbjct: 3859 FEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKD 4038

Query: 1158 EEEAEVDSTMFRQLVGCLRFICHSRLEISYGVGLVSRFMSCPRQSHLAAAKRILRYLKGT 1217
            E    VD +++R ++G L ++  SR +I+Y VG+ +R+ + P+ SHL   KRIL+Y+ GT
Sbjct: 4039 EAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGT 4218

Query: 1218 PNHGVFFPKHLPSQKEDGNLHLVAYTDSDWCGDQVDRRSTMGYVFFFGKAPISWSSKKQA 1277
             ++G+ +     S        LV Y D+DW G   DR+ST G  F+ G   ISW SKKQ 
Sbjct: 4219 SDYGIMYCHCSDSM-------LVGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQN 4377

Query: 1278 AVALSTCEAEYIAACSAACQGLWIQALLEELGLKTDEAVQLMVDNKSAIDLAKNPVSHGR 1337
             V+LST EAEYIAA S+  Q +W++ +L+E  ++ D  + L  DN SAI+++KNPV H R
Sbjct: 4378 CVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQD-VMTLYCDNMSAINISKNPVQHSR 4554

Query: 1338 SKHIETKYHFLRDQVSKEKIKLQHCGTDLQIADVFTKPLKADRFKTLKKMMNVLVL 1393
            +KHI+ ++H++RD V  + I L+H  T+ QIAD+FTK L A++F+ L+  + + +L
Sbjct: 4555 TKHIDIRHHYIRDLVDDKVITLEHVDTEEQIADIFTKALDANQFEKLRGKLGICLL 4722



 Score = 93.6 bits (231), Expect = 5e-19
 Identities = 62/201 (30%), Positives = 99/201 (48%), Gaps = 7/201 (3%)
 Frame = +1

Query: 107 KLKKVKLQTMRRQFELLQMETNESIADFFNRIISLTNLMKACGEKMTDQAIVEKVLRTLT 166
           K+K  +LQ +  +FE L+M+  E I DF   I+ + N   A GE+MTD+ +V K+LR+L 
Sbjct: 361 KVKMSRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLP 540

Query: 167 PKFDHVVVAIEESKKLENLKIEELQGSLEAHEQRIVERSS*KSK-----STDQALQAQ-- 219
            +FD  V AIEE++ + N++++EL GSL+  E  + +R+  KSK     S D+  + +  
Sbjct: 541 KRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRTEKKSKNLAFVSNDEGEEDEYD 720

Query: 220 TSKKGGFSGKGGYRGKGKSKDYKNSS*KQSQFQNQEDHDQPESSSRRGGGSSNYKGGKRK 279
                G +      GK  +K            + Q+ H +      R G     K  ++ 
Sbjct: 721 LDTDEGLTNAVVLLGKQFNKVLNRMD------RRQKPHVRNIPFDIRKGSEYQKKSDEKP 882

Query: 280 FDRKKIRCFNCNKIGHFSSEC 300
              K I+C  C   GH  +EC
Sbjct: 883 SHSKGIQCHGCEGYGHIKAEC 945


>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
            (7%)
          Length = 804

 Score =  240 bits (612), Expect = 4e-63
 Identities = 117/222 (52%), Positives = 157/222 (70%)
 Frame = +1

Query: 1163 VDSTMFRQLVGCLRFICHSRLEISYGVGLVSRFMSCPRQSHLAAAKRILRYLKGTPNHGV 1222
            VD T FR+L+G LR++C+SR  I + V L+SRFM  PR SH+ AAKR+LR +KGT   GV
Sbjct: 7    VDVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGV 186

Query: 1223 FFPKHLPSQKEDGNLHLVAYTDSDWCGDQVDRRSTMGYVFFFGKAPISWSSKKQAAVALS 1282
             FP    S K D    L+ YTDSDW  D    +ST GY+F +  AP++ SSKKQ  +ALS
Sbjct: 187  LFPFKAKSGKPD----LLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALS 354

Query: 1283 TCEAEYIAACSAACQGLWIQALLEELGLKTDEAVQLMVDNKSAIDLAKNPVSHGRSKHIE 1342
            TCEAEY+AA   ACQ +W+  LLEEL L+  + V L++DNKSAI+LAK+P  HGRSKHIE
Sbjct: 355  TCEAEYVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIE 534

Query: 1343 TKYHFLRDQVSKEKIKLQHCGTDLQIADVFTKPLKADRFKTL 1384
             ++H++RDQVSK  + +++C  + Q+AD+ TKP++  RFK +
Sbjct: 535  LRFHYIRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQI 660


>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
            (japonica cultivar-group)}, partial (10%)
          Length = 463

 Score =  177 bits (450), Expect = 2e-44
 Identities = 87/151 (57%), Positives = 109/151 (71%)
 Frame = -3

Query: 893  LAMKEELASIERNKTWDLVDLPANKTPISVKWVFKVKLNPDGSISKHKARLVVRGFMQRG 952
            +AM+EEL   ERN  W LV+ P N   I  KWVF+ KL+  G I ++KARLV +G+ Q  
Sbjct: 461  IAMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEE 282

Query: 953  GLDYSEVFAPVARLETVRMIVALASWKNWDLWQLDVKSAFLNGPLEEEVYITQPPGFEIK 1012
            G+DY E +APVARLE +RM++A  S  N+ L+Q+DVKSAFLNG ++EEVY+ QPPGFEI 
Sbjct: 281  GIDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIP 102

Query: 1013 GSEHKVLKLRKALYGLKQAPRAWNKRIDTFL 1043
                 V KL+KALYGLKQAPRAW +RI  FL
Sbjct: 101  DKPTHVYKLQKALYGLKQAPRAWYERISNFL 9


>BI784757 
          Length = 430

 Score =  174 bits (441), Expect = 2e-43
 Identities = 81/137 (59%), Positives = 102/137 (74%)
 Frame = +1

Query: 521 KDMVHGLSQIKLPSKVCENCLVSKQPRAPFSSFTPTRSTAVLDVIYSDVCGPFETASIGG 580
           ++MV GL QIK PS+VC+ CL  KQ R+ F    P R+   L+VIYSDVCGP +T S+GG
Sbjct: 19  REMVLGLPQIKPPSEVCDGCLQCKQSRSTFKQNVPIRAKEKLEVIYSDVCGPMQTESLGG 198

Query: 581 NKYFASFIDEYSRKMWVYLLKTKSEVFSVFKVFKTMAKKQSGRSIKVLRTDEGGEYCSNE 640
           N+YF SFIDE +RK+WVYL++ KS+ F VF+ FK MAKKQSG  IK+LRT+ GGEY S E
Sbjct: 199 NRYFISFIDELTRKVWVYLIRRKSDFFEVFEKFKNMAKKQSGSLIKILRTNGGGEYVSTE 378

Query: 641 MSNFCEENGILHEVTAP 657
              FC++ GI+HEVT P
Sbjct: 379 FQEFCDQQGIIHEVTPP 429


>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
          Length = 493

 Score =  157 bits (397), Expect = 3e-38
 Identities = 71/138 (51%), Positives = 101/138 (72%)
 Frame = +3

Query: 1253 DRRSTMGYVFFFGKAPISWSSKKQAAVALSTCEAEYIAACSAACQGLWIQALLEELGLKT 1312
            DR+ST G+VFF G    +W SKKQ  V LSTCEAEY+AA S  C  +W++ LL+EL +  
Sbjct: 12   DRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKMPQ 191

Query: 1313 DEAVQLMVDNKSAIDLAKNPVSHGRSKHIETKYHFLRDQVSKEKIKLQHCGTDLQIADVF 1372
            +E +++ VDNKSA+ LAKNPV H +SKHI+T+YHF+R+ + K+++KL++  +  Q AD+F
Sbjct: 192  EEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAADIF 371

Query: 1373 TKPLKADRFKTLKKMMNV 1390
            TKPLK + F  L+ M+ V
Sbjct: 372  TKPLKLETFVKLRSMLGV 425


>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
            partial (34%)
          Length = 407

 Score =  144 bits (363), Expect = 3e-34
 Identities = 65/125 (52%), Positives = 92/125 (73%)
 Frame = -2

Query: 911  VDLPANKTPISVKWVFKVKLNPDGSISKHKARLVVRGFMQRGGLDYSEVFAPVARLETVR 970
            V LP  KTP+  +WV+ VK+ P G + + KARLV +G+ Q  G+DY + F+PVA+L TVR
Sbjct: 406  VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227

Query: 971  MIVALASWKNWDLWQLDVKSAFLNGPLEEEVYITQPPGFEIKGSEHKVLKLRKALYGLKQ 1030
            + +A+A+  +W L QLD+K+AFL+G LEE++Y+ QPPGF  +G    V KL ++LYGLKQ
Sbjct: 226  LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47

Query: 1031 APRAW 1035
            +PRAW
Sbjct: 46   SPRAW 32


>TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement pol
           polyprotein, partial (4%)
          Length = 919

 Score =  143 bits (360), Expect = 6e-34
 Identities = 76/200 (38%), Positives = 119/200 (59%)
 Frame = +1

Query: 485 TAIDSQCLTAELEDNSWLWHQRFGHLNFKDLSSLKSKDMVHGLSQIKLPSKVCENCLVSK 544
           T + +  +   +   S ++     + +F D    + K +V+ L  + +   VC+ C + K
Sbjct: 178 TRVLNHTINVVIHPISIVYRPTINNFHFLD*IIFQEK-IVYDLPIMNILDGVCDTCEIGK 354

Query: 545 QPRAPFSSFTPTRSTAVLDVIYSDVCGPFETASIGGNKYFASFIDEYSRKMWVYLLKTKS 604
           + R  F +    R   +L +++ D+C   E  + G N YF +FID++S+KMWVY LK KS
Sbjct: 355 KHRESFPTGKSWRMKKLLKIVHLDLC-TVEIPTHGDNNYFITFIDDFSKKMWVYFLKQKS 531

Query: 605 EVFSVFKVFKTMAKKQSGRSIKVLRTDEGGEYCSNEMSNFCEENGILHEVTAPYTPQHNG 664
           E  + FK+FK  A+KQ+G  +K L  D+G EY S  +  F E++GI H++T  YTPQHNG
Sbjct: 532 EACNAFKMFKAFAEKQNGCKVKALIIDKGQEYLSYTI--FFEKHGIQHQLTTKYTPQHNG 705

Query: 665 VAERRNRTVLNMVRSMLKGK 684
           V ER+N+T+++MVR MLK K
Sbjct: 706 VTERKNKTIMDMVRCMLKAK 765


>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
            vinifera}, partial (34%)
          Length = 409

 Score =  132 bits (331), Expect = 1e-30
 Identities = 58/128 (45%), Positives = 90/128 (70%)
 Frame = +3

Query: 879  PVKFEEAIKNKTWRLAMKEELASIERNKTWDLVDLPANKTPISVKWVFKVKLNPDGSISK 938
            P    EA+ +  WR AM +E+ ++E N TW+LV LP  KT +  +WV+ VK+ P+G + +
Sbjct: 21   PSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGPNGKVDR 200

Query: 939  HKARLVVRGFMQRGGLDYSEVFAPVARLETVRMIVALASWKNWDLWQLDVKSAFLNGPLE 998
             KARLV +G+ Q  G++Y + F+PV  L TVR+ +A+A+ ++W L QLD+K+AFL+G LE
Sbjct: 201  LKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAFLHGDLE 380

Query: 999  EEVYITQP 1006
            E++Y+ QP
Sbjct: 381  EDIYMEQP 404


>BU549979 
          Length = 615

 Score =  130 bits (328), Expect = 3e-30
 Identities = 66/194 (34%), Positives = 109/194 (56%), Gaps = 2/194 (1%)
 Frame = -1

Query: 1191 LVSRFMSCPRQSHLAAAKRILRYLKGTPNHGVFFPKHLPSQKEDGNLHLVAYTDSDWCGD 1250
            ++ R+ S P   H   AK+++RYL+GT ++ + +       K+   L ++ Y+DSD+ G 
Sbjct: 615  VLGRYQSNPGIDHWKTAKKVMRYLQGTKDYMLMY-------KQTNCLEVIGYSDSDFAGC 457

Query: 1251 QVDRRSTMGYVFFFGKAPISWSSKKQAAVALSTCEAEYIAACSAACQGLWIQALLEELGL 1310
               RRST GY+F      +SW S KQ  +A ST E E++    A   G+W+++ +  L +
Sbjct: 456  VDSRRSTSGYIFMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRV 277

Query: 1311 --KTDEAVQLMVDNKSAIDLAKNPVSHGRSKHIETKYHFLRDQVSKEKIKLQHCGTDLQI 1368
                   ++L  DN +A+ +AKN  S  RSKHI+ KY  +R++V ++K+ ++H  T+L I
Sbjct: 276  VDSISRPLKLYCDNFAAVFMAKNNKSGNRSKHIDIKYLVIRERVKEKKVVIEHVNTELMI 97

Query: 1369 ADVFTKPLKADRFK 1382
             D  TK +    FK
Sbjct: 96   VDPLTKGMTPKNFK 55


>AI959950 
          Length = 466

 Score =  129 bits (325), Expect = 7e-30
 Identities = 62/130 (47%), Positives = 90/130 (68%)
 Frame = -1

Query: 894  AMKEELASIERNKTWDLVDLPANKTPISVKWVFKVKLNPDGSISKHKARLVVRGFMQRGG 953
            AM+EEL   ++N    LV LP  K  + VKW+F  KL+ DG + ++KARLV +G+ Q+ G
Sbjct: 391  AMQEELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQEG 212

Query: 954  LDYSEVFAPVARLETVRMIVALASWKNWDLWQLDVKSAFLNGPLEEEVYITQPPGFEIKG 1013
            +DY + FA VARLE + ++++ A++ N  L+Q+DVKSAFLNG +++EVY+ QPPGFE + 
Sbjct: 211  IDYPKTFALVARLEVICILLSFATYSNMKLYQMDVKSAFLNGLIQKEVYVEQPPGFENET 32

Query: 1014 SEHKVLKLRK 1023
                V KL K
Sbjct: 31   LHQHVFKLNK 2


>BG508993 
          Length = 374

 Score =  129 bits (324), Expect = 9e-30
 Identities = 67/130 (51%), Positives = 86/130 (65%)
 Frame = +1

Query: 1215 KGTPNHGVFFPKHLPSQKEDGNLHLVAYTDSDWCGDQVDRRSTMGYVFFFGKAPISWSSK 1274
            KGT + G+F+    PS     N  LV + DSD+ GD  DR+ST G+VFF G    +WSSK
Sbjct: 4    KGTIDFGLFYS---PSN----NYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSK 162

Query: 1275 KQAAVALSTCEAEYIAACSAACQGLWIQALLEELGLKTDEAVQLMVDNKSAIDLAKNPVS 1334
            KQ  V L TCEAEY+AA S  C  +W++ LLEEL L   E+ ++ VDN+SA +LAKN V 
Sbjct: 163  KQGIVTLFTCEAEYVAATSCTCHAIWLRRLLEELQLLQKESTKIYVDNRSAQELAKNSVF 342

Query: 1335 HGRSKHIETK 1344
            H RSKHI+T+
Sbjct: 343  HERSKHIDTR 372


>TC232995 
          Length = 1009

 Score =  127 bits (320), Expect = 3e-29
 Identities = 66/171 (38%), Positives = 101/171 (58%)
 Frame = +2

Query: 1003 ITQPPGFEIKGSEHKVLKLRKALYGLKQAPRAWNKRIDTFLSQTGFHKCSVEHGVYVKSC 1062
            + QPPGFEI    + V KL+KALYGLKQAPRAW +R+  FL +  F +  V+  +++K  
Sbjct: 2    VEQPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKR- 178

Query: 1063 DSGGVLLLCLYVDDLLITGSSYSKIQAVKRSLNNEFEMTDLGKLSYFLGIEFVQTGEGIL 1122
                +LL+ +YVDD++   ++ S  +     + +EFEM+ +G+L YFLG++  QT  GI 
Sbjct: 179  KHNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIF 358

Query: 1123 MHQRKYILEVLKRFNLLSCNPAETPVEGNLKLGLCEEEAEVDSTMFRQLVG 1173
            ++Q KY  E++KRF + S     TP+  N  L   E    +D   +R  +G
Sbjct: 359  INQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIG 511


>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
          Length = 558

 Score =  125 bits (315), Expect = 1e-28
 Identities = 79/184 (42%), Positives = 112/184 (59%), Gaps = 5/184 (2%)
 Frame = +1

Query: 934  GSISKHKARLVVRGFMQRGGLDYSEVFAPVARLETVRMIVALASWKNWDLWQLDVKSAFL 993
            G+I + KARLV + + Q  G DY+  F+PVA++  V ++ ++A   +W L+ LD K+AFL
Sbjct: 28   GTIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFL 207

Query: 994  NGPLEEEVYITQPPGFEIKG-SEHKVLKLRKALYGLKQAPRAWNKRIDTFL---SQTGFH 1049
            +G LEEEVY+ QP GF  +G S + V +L ++ YGLKQ+PRAW      FL   +   + 
Sbjct: 208  HGYLEEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAW-----PFLYCGAAIWYD 372

Query: 1050 KCSVEHGVYVKSCDS-GGVLLLCLYVDDLLITGSSYSKIQAVKRSLNNEFEMTDLGKLSY 1108
                +H V+   C S  G + L +YVDD+ ITGS    I  +K  L  +F+  DLGKL Y
Sbjct: 373  SHEADHSVFY--CHSPQGCIYLIVYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRY 546

Query: 1109 FLGI 1112
            FLGI
Sbjct: 547  FLGI 558


>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
            (30%)
          Length = 687

 Score =  125 bits (314), Expect = 1e-28
 Identities = 60/148 (40%), Positives = 90/148 (60%)
 Frame = +2

Query: 1235 GNLHLVAYTDSDWCGDQVDRRSTMGYVFFFGKAPISWSSKKQAAVALSTCEAEYIAACSA 1294
            GN  L  Y D+DW G  +DRRST GY  F G   +SW SKKQ  VA S+ EAEY +    
Sbjct: 5    GNTQLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMV 184

Query: 1295 ACQGLWIQALLEELGLKTDEAVQLMVDNKSAIDLAKNPVSHGRSKHIETKYHFLRDQVSK 1354
             C+ +WI+  L+EL    +  ++L  DN++A+ +A NPV H R+KHIE   HF+R+++  
Sbjct: 185  TCELMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLS 364

Query: 1355 EKIKLQHCGTDLQIADVFTKPLKADRFK 1382
            ++I  +  G++ Q  D+ TK L+  + +
Sbjct: 365  KEIVTEFIGSNDQPVDILTKSLRGPKIQ 448


>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
          Length = 1213

 Score =  108 bits (269), Expect(2) = 3e-28
 Identities = 62/190 (32%), Positives = 101/190 (52%)
 Frame = +3

Query: 1068 LLLCLYVDDLLITGSSYSKIQAVKRSLNNEFEMTDLGKLSYFLGIEFVQTGEGILMHQRK 1127
            L++ +YVDD++   +S    +     + + FE +  G+L + LG++ +Q   GI +HQ K
Sbjct: 489  LIIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQEK 668

Query: 1128 YILEVLKRFNLLSCNPAETPVEGNLKLGLCEEEAEVDSTMFRQLVGCLRFICHSRLEISY 1187
            Y    LKRF +    P  TP+  +  +   E+        +  ++  L ++  SR +I +
Sbjct: 669  YTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIVF 848

Query: 1188 GVGLVSRFMSCPRQSHLAAAKRILRYLKGTPNHGVFFPKHLPSQKEDGNLHLVAYTDSDW 1247
             V L +RF S P+ SH+ A KRILRYL GT NH ++F       K+     L+ Y D  +
Sbjct: 849  VVCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWF-------KKRSEFDLLGYCDVYF 1007

Query: 1248 CGDQVDRRST 1257
             GD+V+R+ST
Sbjct: 1008 AGDKVERKST 1037



 Score = 37.0 bits (84), Expect(2) = 3e-28
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = +2

Query: 1014 SEHKVLKLRKAL---YGLKQAPRAWNKRIDTFLSQTGFHKCSVEHGVYVKS 1061
            S H V + RK L   YGLKQA RAW +R+ +FL   GF +   +  ++ K+
Sbjct: 320  SNHWV*R*RKTLSCVYGLKQALRAWYERLSSFLVSNGFTRGITDPALFRKA 472


>BI321712 
          Length = 399

 Score =  121 bits (303), Expect = 2e-27
 Identities = 59/127 (46%), Positives = 86/127 (67%)
 Frame = -3

Query: 1070 LCLYVDDLLITGSSYSKIQAVKRSLNNEFEMTDLGKLSYFLGIEFVQTGEGILMHQRKYI 1129
            LCLYVDDL+ TG++ S  +  K+ ++NEFEMTD+G ++Y+LGIE  Q  +GI + Q  Y 
Sbjct: 385  LCLYVDDLIFTGNNPSMFEEFKKDMSNEFEMTDMGLMAYYLGIEVKQEDKGIFITQEGYA 206

Query: 1130 LEVLKRFNLLSCNPAETPVEGNLKLGLCEEEAEVDSTMFRQLVGCLRFICHSRLEISYGV 1189
             EVLK+F +   NP  TP+E   KL   E+   VD T+++ L+G LR++  +R +I Y V
Sbjct: 205  KEVLKKFKMDDANPVGTPMECGSKLSKHEKGENVDPTLYKSLIGSLRYLTCTRPDILYVV 26

Query: 1190 GLVSRFM 1196
            G+VSR+M
Sbjct: 25   GVVSRYM 5


>TC213445 
          Length = 705

 Score = 91.3 bits (225), Expect(2) = 2e-26
 Identities = 48/99 (48%), Positives = 64/99 (64%)
 Frame = +1

Query: 1251 QVDRRSTMGYVFFFGKAPISWSSKKQAAVALSTCEAEYIAACSAACQGLWIQALLEELGL 1310
            + DR ST     F G A +SW SKKQ +V LST EAEYI+A S   Q  W++  L + GL
Sbjct: 400  KTDRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYGL 579

Query: 1311 KTDEAVQLMVDNKSAIDLAKNPVSHGRSKHIETKYHFLR 1349
            K D  + +  DN SAI+L+KN + + R+KHIE ++HFLR
Sbjct: 580  KLDH-IPIRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693



 Score = 47.8 bits (112), Expect(2) = 2e-26
 Identities = 24/69 (34%), Positives = 42/69 (60%)
 Frame = +2

Query: 1177 FICHSRLEISYGVGLVSRFMSCPRQSHLAAAKRILRYLKGTPNHGVFFPKHLPSQKEDGN 1236
            ++  SR  I + V +  R+ + P++SHL+  KRI+RYL G  N G+++PK       + +
Sbjct: 215  YLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPK-------NSS 373

Query: 1237 LHLVAYTDS 1245
             +LV Y+D+
Sbjct: 374  YNLVGYSDA 400


>CO982036 
          Length = 674

 Score =  117 bits (292), Expect = 5e-26
 Identities = 79/213 (37%), Positives = 112/213 (52%), Gaps = 1/213 (0%)
 Frame = -2

Query: 1070 LCLYVDDLLITGSSYSKIQAVKRSLNNEFEMTDLGKLSYFLGIEFVQTGEGILMHQRKYI 1129
            L +YVD ++ITGSS + IQ +   LN+ F +  LGKL YF+ IE V++   +L   R  I
Sbjct: 646  LLVYVD-IIITGSSCTLIQNLTSKLNSSFPLKLLGKLDYFVEIE-VKSMPDLLFSLRTSI 473

Query: 1130 LEVLKRFNLLSCNPAETPVEGNLKLGLCEEEAEVDSTMFRQLVGCLRFICHSRLEISYGV 1189
             E+  R       P  +P+    KL   + +     T +R +VG L++    R EIS+ V
Sbjct: 472  FEIFCRKPR*QAQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEISFAV 293

Query: 1190 GLVSRFMSCPRQSHLAAAKRILRYLKGTPNHGVFFPKHLPSQKEDGNLHLVAYTDSDWCG 1249
              V +FMS P  SH    KRILRYLKG+ ++G+     + SQ     L +  + D+DW  
Sbjct: 292  NKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQP----LPIRGFCDADWAS 125

Query: 1250 DQVDRRSTMGYVFFFGKAPIS-WSSKKQAAVAL 1281
               D+RST G   F G   IS W  K+Q A A+
Sbjct: 124  AVDDKRSTSGAAVFLGPNLISWWXXKQQVAFAV 26


>CO981347 
          Length = 624

 Score = 94.0 bits (232), Expect(2) = 5e-26
 Identities = 47/116 (40%), Positives = 64/116 (54%)
 Frame = +2

Query: 606 VFSVFKVFKTMAKKQSGRSIKVLRTDEGGEYCSNEMSNFCEENGILHEVTAPYTPQHNGV 665
           +F  F+   T+   Q G  +KVLRTD G E+   + + FC + GI      P+TP  NG+
Sbjct: 104 IF*KFRE*HTLIGNQLGTKLKVLRTDNGLEFVLEQFNEFCRKIGIKRHKIVPHTP*QNGL 283

Query: 666 AERRNRTVLNMVRSMLKGKSLPHRFCGEAVMTAVYVLNLCPTKSVDSQVPEAVWSG 721
           AER N T+L  VR ML    LP  F GEA  T  Y++N CP+ ++  + P   WSG
Sbjct: 284 AERMNMTILERVRCMLLSARLPKTFWGEAANTTSYLINRCPSSTLGFKTPMEAWSG 451



 Score = 43.9 bits (102), Expect(2) = 5e-26
 Identities = 17/36 (47%), Positives = 26/36 (72%)
 Frame = +3

Query: 572 PFETASIGGNKYFASFIDEYSRKMWVYLLKTKSEVF 607
           P    + GG+ YF + ID++SR++W+Y+LK KSE F
Sbjct: 3   PSRVKTHGGSSYFLTIIDDFSRRVWLYVLKNKSESF 110


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.320    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,382,955
Number of Sequences: 63676
Number of extensions: 844605
Number of successful extensions: 4125
Number of sequences better than 10.0: 170
Number of HSP's better than 10.0 without gapping: 3978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4058
length of query: 1400
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1291
effective length of database: 5,698,948
effective search space: 7357341868
effective search space used: 7357341868
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)