BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0391.5
(359 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204675 homologue to UP|Q8GV76 (Q8GV76) Auxin efflux carrier pr... 218 4e-57
TC220216 similar to UP|Q8LKH0 (Q8LKH0) PIN1-like auxin transport... 215 2e-56
AW596376 weakly similar to GP|10441744|gb| PIN1-like auxin trans... 215 3e-56
TC227967 homologue to UP|Q84WX3 (Q84WX3) Auxin efflux carrier pr... 207 6e-54
TC222695 weakly similar to UP|Q6ZIB5 (Q6ZIB5) PIN1-like auxin tr... 182 6e-53
TC233634 similar to UP|Q8LKH0 (Q8LKH0) PIN1-like auxin transport... 194 4e-50
BG839278 homologue to GP|25986771|gb auxin efflux carrier protei... 165 3e-41
TC211544 weakly similar to UP|Q84YG8 (Q84YG8) Auxin efflux carri... 156 2e-38
TC234581 homologue to UP|Q84YG8 (Q84YG8) Auxin efflux carrier pr... 154 5e-38
TC227966 similar to UP|Q8H1L0 (Q8H1L0) PIN-like protein, partial... 121 4e-28
BE191508 similar to GP|10441744|gb| PIN1-like auxin transport pr... 112 3e-25
TC220979 similar to UP|Q7X9P6 (Q7X9P6) PIN1-like protein, partia... 97 1e-20
BI974039 similar to GP|25956262|dbj PIN1-like auxin transport pr... 70 1e-12
TC231645 similar to UP|AEC1_ARATH (Q9C6B8) Auxin efflux carrier ... 57 1e-08
BI427388 homologue to GP|21435938|gb| PIN1-like auxin transport ... 31 0.99
TC216999 similar to UP|Q9AUH6 (Q9AUH6) F-box containing protein ... 30 1.3
TC232536 similar to UP|Q6SW48 (Q6SW48) UL95, partial (4%) 30 1.7
BE610975 30 2.2
TC230252 similar to UP|Q40793 (Q40793) Tyrosine-rich hydroxyprol... 30 2.2
TC222870 29 2.9
>TC204675 homologue to UP|Q8GV76 (Q8GV76) Auxin efflux carrier protein,
partial (40%)
Length = 2164
Score = 218 bits (554), Expect = 4e-57
Identities = 111/187 (59%), Positives = 137/187 (72%), Gaps = 2/187 (1%)
Frame = +1
Query: 175 SETSQELQSKEEEEA--EHRPGRKLRILLILTKVGKKLIKNPNTYATFIGLIWSSIHFRW 232
S ++ EL K +H P + LIL V +KLI+NPNTY++ IG+IWS + FRW
Sbjct: 481 SSSTAELHPKSAVAVAGKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGVIWSLVAFRW 660
Query: 233 GVHMPDVVNQSITILSSGGLGMATFSLGLFMASNSTIIACGPRMTMVAIGLKFLVGPALM 292
V MP ++ +SI+ILS GLGMA FSLGLFMA IIACG + A+ ++FL GPA+M
Sbjct: 661 HVQMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFAMAVRFLTGPAVM 840
Query: 293 AVASIVIGLRDTMLKVAIVQAALPQGIVPFVFAREYNVHPAILSTGVLLGMLIALPVALT 352
A ASI +GLR T+L+VAIVQAALPQGIVPFVFA+EYNVHPAILST V+ GMLIALP+ L
Sbjct: 841 AAASIAVGLRGTLLRVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLL 1020
Query: 353 YYVLLAL 359
YY+LL L
Sbjct: 1021YYILLGL 1041
>TC220216 similar to UP|Q8LKH0 (Q8LKH0) PIN1-like auxin transport protein,
partial (36%)
Length = 970
Score = 215 bits (548), Expect = 2e-56
Identities = 112/187 (59%), Positives = 138/187 (72%), Gaps = 2/187 (1%)
Frame = +2
Query: 175 SETSQELQSKEEEEAE--HRPGRKLRILLILTKVGKKLIKNPNTYATFIGLIWSSIHFRW 232
S ++ EL+ K + EA+ P + LIL V +KLI+NPNTY++ GL WS I F+W
Sbjct: 68 SSSTAELRPKAQGEAKPTSMPPTSVMTRLILIMVWRKLIRNPNTYSSLFGLTWSLISFKW 247
Query: 233 GVHMPDVVNQSITILSSGGLGMATFSLGLFMASNSTIIACGPRMTMVAIGLKFLVGPALM 292
V MP +V +SI+ILS GLGMA FSLGLFMA IIACG + A+ ++FL GPA+M
Sbjct: 248 NVVMPAIVAKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVASFAMAVRFLTGPAVM 427
Query: 293 AVASIVIGLRDTMLKVAIVQAALPQGIVPFVFAREYNVHPAILSTGVLLGMLIALPVALT 352
AVASIV+GLR +L +AIVQAALPQGIVPFVFA+EYNVHP ILSTGV+ GMLIALP+ L
Sbjct: 428 AVASIVVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLV 607
Query: 353 YYVLLAL 359
YY+LL L
Sbjct: 608 YYILLGL 628
>AW596376 weakly similar to GP|10441744|gb| PIN1-like auxin transport protein
{Populus tremula x Populus tremuloides}, partial (16%)
Length = 416
Score = 215 bits (547), Expect = 3e-56
Identities = 111/138 (80%), Positives = 122/138 (87%), Gaps = 1/138 (0%)
Frame = +1
Query: 175 SETSQELQSKEEEE-AEHRPGRKLRILLILTKVGKKLIKNPNTYATFIGLIWSSIHFRWG 233
+ TS E+QSKEEEE AEHR K R+LLIL KVG KLI NPNTYATFIGLIW+SIHFRWG
Sbjct: 1 TRTSLEIQSKEEEEEAEHRTQSKTRMLLILMKVGNKLIINPNTYATFIGLIWASIHFRWG 180
Query: 234 VHMPDVVNQSITILSSGGLGMATFSLGLFMASNSTIIACGPRMTMVAIGLKFLVGPALMA 293
V MPDVVNQSI IL+SGGLGMATFSLGLFMAS++ II CGPRMT+VA+GLKFL GPA+MA
Sbjct: 181 VDMPDVVNQSIEILASGGLGMATFSLGLFMASSNRIIVCGPRMTLVAMGLKFLAGPAIMA 360
Query: 294 VASIVIGLRDTMLKVAIV 311
VASIVIGLRD MLKVAI+
Sbjct: 361 VASIVIGLRDRMLKVAII 414
>TC227967 homologue to UP|Q84WX3 (Q84WX3) Auxin efflux carrier protein PIN1,
partial (56%)
Length = 1532
Score = 207 bits (527), Expect = 6e-54
Identities = 106/192 (55%), Positives = 133/192 (69%), Gaps = 5/192 (2%)
Frame = +2
Query: 173 GESETSQELQSKEEEEA-----EHRPGRKLRILLILTKVGKKLIKNPNTYATFIGLIWSS 227
G E +E+ E E+ + P + LIL V +KLI+NPNTY++ IGL WS
Sbjct: 578 GNREMDREMNQLEGEKVGDGKPKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTWSL 757
Query: 228 IHFRWGVHMPDVVNQSITILSSGGLGMATFSLGLFMASNSTIIACGPRMTMVAIGLKFLV 287
+ F+W V MP ++ +SI+ILS GLGMA FSLGLFMA +IACG A+ ++FL
Sbjct: 758 VSFKWNVEMPAIIAKSISILSDAGLGMAMFSLGLFMALQPRVIACGNSTAAFAMAVRFLT 937
Query: 288 GPALMAVASIVIGLRDTMLKVAIVQAALPQGIVPFVFAREYNVHPAILSTGVLLGMLIAL 347
GPA+MA ASI +GL+ +L VAIVQAALPQGIVPFVFA+EYNVHP ILST V+ GMLIAL
Sbjct: 938 GPAVMAAASIAVGLKGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIAL 1117
Query: 348 PVALTYYVLLAL 359
P+ L YY+LL L
Sbjct: 1118PITLVYYILLGL 1153
>TC222695 weakly similar to UP|Q6ZIB5 (Q6ZIB5) PIN1-like auxin transport
protein-like, partial (41%)
Length = 1059
Score = 182 bits (461), Expect(2) = 6e-53
Identities = 95/234 (40%), Positives = 136/234 (57%), Gaps = 8/234 (3%)
Frame = +1
Query: 132 LLPQIIFLQSMIWYNLLLFLHEL-DAAIPARTMPATPPSQGT-------GESETSQELQS 183
L+ Q LQ+ IW LLLF+ E I T P T G + + +
Sbjct: 220 LVVQSSVLQATIWLPLLLFVMEFWRTGIEGTTTTTVKPRSKTMINKNEGGGGKDVEAVDV 399
Query: 184 KEEEEAEHRPGRKLRILLILTKVGKKLIKNPNTYATFIGLIWSSIHFRWGVHMPDVVNQS 243
KEE E +L ++ V +KL NPN+Y IG+ W+ I RW + MP ++ S
Sbjct: 400 KEELMLEESVTSRLPFCKVMKLVWRKLATNPNSYGCVIGISWAFISNRWNLEMPSMLEGS 579
Query: 244 ITILSSGGLGMATFSLGLFMASNSTIIACGPRMTMVAIGLKFLVGPALMAVASIVIGLRD 303
I I+S G G A FS+G+FMA +IACGP MT++ + LKF+ GPA A+ +I +GLR
Sbjct: 580 IQIMSKAGTGTAMFSMGIFMALQEKLIACGPSMTLIGLVLKFIAGPAATAIGAIAVGLRG 759
Query: 304 TMLKVAIVQAALPQGIVPFVFAREYNVHPAILSTGVLLGMLIALPVALTYYVLL 357
+L+V I+QAA+PQ I F+FA+EY +HP +LST V+ GM+++LPV + YY +L
Sbjct: 760 DVLRVVIIQAAVPQSITSFIFAKEYGLHPEVLSTAVIFGMIVSLPVLVAYYAIL 921
Score = 43.9 bits (102), Expect(2) = 6e-53
Identities = 21/64 (32%), Positives = 34/64 (52%)
Frame = +2
Query: 62 NNVYKMSLKLIYADCIQKLLAILALTLIIKISARGGLKWIITGLSLSTLPNTLILGIPLM 121
N+ M+ I AD I K + ++ L L K + + W I SL L N +++G+P++
Sbjct: 11 NSARGMNFSFIAADTISKFIIMVVLALWAKCTPKCTFCWSIISFSLCNLTNAVVVGVPMV 190
Query: 122 KAMY 125
K MY
Sbjct: 191 KPMY 202
>TC233634 similar to UP|Q8LKH0 (Q8LKH0) PIN1-like auxin transport protein,
partial (41%)
Length = 817
Score = 194 bits (494), Expect = 4e-50
Identities = 94/157 (59%), Positives = 119/157 (74%)
Frame = +2
Query: 1 MISLGDVYHVVTATVPLYVTMILAFISVKWWKLFTPDQCSGINKFVANFSIPLLSFQVIS 60
MI+L D+YHV+TA VPLYV MILA+ SVKWWK+FTPDQCSGIN+FVA F++PLLSF IS
Sbjct: 89 MITLWDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIS 268
Query: 61 SNNVYKMSLKLIYADCIQKLLAILALTLIIKISARGGLKWIITGLSLSTLPNTLILGIPL 120
+NN Y M+ K I AD +QK + + L + + S+RG L+W IT SLSTLPNTL++GIPL
Sbjct: 269 TNNPYAMNYKFIAADSLQKAIVLAVLLVWSRTSSRGSLEWSITLFSLSTLPNTLVMGIPL 448
Query: 121 MKAMYKDEADALLPQIIFLQSMIWYNLLLFLHELDAA 157
+K MY D + L+ QI+ LQ +IWY L+LFL E A
Sbjct: 449 LKGMYGDASGTLMVQIVVLQCIIWYTLMLFLFEYRGA 559
>BG839278 homologue to GP|25986771|gb auxin efflux carrier protein {Medicago
truncatula}, partial (19%)
Length = 744
Score = 165 bits (418), Expect = 3e-41
Identities = 78/143 (54%), Positives = 107/143 (74%)
Frame = +2
Query: 1 MISLGDVYHVVTATVPLYVTMILAFISVKWWKLFTPDQCSGINKFVANFSIPLLSFQVIS 60
MI+ GD Y V++A +PLYV MILA+ SV+WWK+F+PDQCSGIN+FVA F++PLLSF IS
Sbjct: 314 MITWGDFYTVMSAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 493
Query: 61 SNNVYKMSLKLIYADCIQKLLAILALTLIIKISARGGLKWIITGLSLSTLPNTLILGIPL 120
NN Y M+ + I AD +QK++ + AL + SA G L+W+IT SLSTLPNTL++GIPL
Sbjct: 494 LNNPYAMNFRFIAADTLQKIIMLFALAIWTNFSANGSLEWMITIFSLSTLPNTLVMGIPL 673
Query: 121 MKAMYKDEADALLPQIIFLQSMI 143
+ AMY + + L+ Q++ Q +I
Sbjct: 674 LIAMYGEYSGLLMVQVVVXQCII 742
>TC211544 weakly similar to UP|Q84YG8 (Q84YG8) Auxin efflux carrier protein,
partial (26%)
Length = 573
Score = 156 bits (394), Expect = 2e-38
Identities = 74/151 (49%), Positives = 105/151 (69%)
Frame = +3
Query: 7 VYHVVTATVPLYVTMILAFISVKWWKLFTPDQCSGINKFVANFSIPLLSFQVISSNNVYK 66
+Y++V A VPLYV MILA+ SV WWK+FTP+QCSGIN+ VA +S+P L+F ++ NN Y
Sbjct: 96 IYNIVAALVPLYVPMILAYASVLWWKIFTPEQCSGINRLVALYSVPFLNFNFLAFNNPYA 275
Query: 67 MSLKLIYADCIQKLLAILALTLIIKISARGGLKWIITGLSLSTLPNTLILGIPLMKAMYK 126
M+L+ I AD +QK++ + AL L + G L IT S ST PNTLI+G+P + AMY
Sbjct: 276 MNLRFIAADTLQKVIILGALFLWSAFTKCGNLD*TITLFSFSTFPNTLIVGVPFLTAMYG 455
Query: 127 DEADALLPQIIFLQSMIWYNLLLFLHELDAA 157
D + +L+ QI +Q ++W+ L+LFL+E A
Sbjct: 456 DSSGSLMSQIFVMQGVVWFTLMLFLYEYRGA 548
>TC234581 homologue to UP|Q84YG8 (Q84YG8) Auxin efflux carrier protein,
partial (21%)
Length = 595
Score = 154 bits (390), Expect = 5e-38
Identities = 79/129 (61%), Positives = 96/129 (74%)
Frame = +2
Query: 231 RWGVHMPDVVNQSITILSSGGLGMATFSLGLFMASNSTIIACGPRMTMVAIGLKFLVGPA 290
R + MP +V SI+ILS GLGMA FSLGLFMA IIACG + ++ ++FL GPA
Sbjct: 2 RGHIEMPTIVKGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVAAFSMAVRFLTGPA 181
Query: 291 LMAVASIVIGLRDTMLKVAIVQAALPQGIVPFVFAREYNVHPAILSTGVLLGMLIALPVA 350
++A SI IGLR +L VAIVQAALPQGIVPFVFA+EYN+H ILST V+ GMLIALP+
Sbjct: 182 VIAATSIGIGLRGVLLHVAIVQAALPQGIVPFVFAKEYNLHADILSTAVIFGMLIALPIT 361
Query: 351 LTYYVLLAL 359
+ YYVLL +
Sbjct: 362 ILYYVLLGV 388
>TC227966 similar to UP|Q8H1L0 (Q8H1L0) PIN-like protein, partial (52%)
Length = 992
Score = 121 bits (304), Expect = 4e-28
Identities = 59/113 (52%), Positives = 83/113 (73%)
Frame = +1
Query: 45 FVANFSIPLLSFQVISSNNVYKMSLKLIYADCIQKLLAILALTLIIKISARGGLKWIITG 104
FVA F++PLLSF I+SNN Y+M+L+ + AD +QK++ ++ L + I+ RG L+W IT
Sbjct: 4 FVALFAVPLLSFHFIASNNPYEMNLRFLAADTLQKIIILVLLAVWSNITKRGCLEWAITL 183
Query: 105 LSLSTLPNTLILGIPLMKAMYKDEADALLPQIIFLQSMIWYNLLLFLHELDAA 157
SLSTLPNTL++GIPL+K MY D + +L+ QI+ LQ +IWY L+LFL E A
Sbjct: 184 FSLSTLPNTLVMGIPLLKGMYGDFSGSLMVQIVVLQCIIWYTLMLFLFEFRGA 342
>BE191508 similar to GP|10441744|gb| PIN1-like auxin transport protein
{Populus tremula x Populus tremuloides}, partial (9%)
Length = 478
Score = 112 bits (279), Expect = 3e-25
Identities = 51/57 (89%), Positives = 55/57 (96%)
Frame = -3
Query: 1 MISLGDVYHVVTATVPLYVTMILAFISVKWWKLFTPDQCSGINKFVANFSIPLLSFQ 57
MISL DVYHVVTATVPLYVTM LA+ISVKWWKLFTP+QCSGINKFVANFS+P+LSFQ
Sbjct: 173 MISLADVYHVVTATVPLYVTMFLAYISVKWWKLFTPEQCSGINKFVANFSVPILSFQ 3
>TC220979 similar to UP|Q7X9P6 (Q7X9P6) PIN1-like protein, partial (25%)
Length = 660
Score = 96.7 bits (239), Expect = 1e-20
Identities = 50/95 (52%), Positives = 63/95 (65%), Gaps = 5/95 (5%)
Frame = +2
Query: 175 SETSQELQSKEEEEAE-----HRPGRKLRILLILTKVGKKLIKNPNTYATFIGLIWSSIH 229
S ++ EL K AE H P + LIL V +KLI+NPNTY++ IG++WS I
Sbjct: 365 SSSTAELHPKAAGAAEAPASKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGVVWSLIA 544
Query: 230 FRWGVHMPDVVNQSITILSSGGLGMATFSLGLFMA 264
FRW VHMP ++ +SI+ILS GLGMA FSLGLFMA
Sbjct: 545 FRWHVHMPKIIEKSISILSDAGLGMAMFSLGLFMA 649
>BI974039 similar to GP|25956262|dbj PIN1-like auxin transport protein
{Cucumis sativus}, partial (7%)
Length = 421
Score = 70.5 bits (171), Expect = 1e-12
Identities = 34/60 (56%), Positives = 43/60 (71%)
Frame = +1
Query: 260 GLFMASNSTIIACGPRMTMVAIGLKFLVGPALMAVASIVIGLRDTMLKVAIVQAALPQGI 319
GLFMA +IACG A+ ++FL GPA+MA AS+ +GL+ +L VAIVQAALPQGI
Sbjct: 241 GLFMALQPRVIACGNSTAAFAMAVRFLTGPAVMAAASVAVGLKGVLLHVAIVQAALPQGI 420
>TC231645 similar to UP|AEC1_ARATH (Q9C6B8) Auxin efflux carrier component 1
(PIN-FORMED protein) (AtPIN1), partial (7%)
Length = 761
Score = 57.0 bits (136), Expect = 1e-08
Identities = 25/42 (59%), Positives = 30/42 (70%)
Frame = -3
Query: 318 GIVPFVFAREYNVHPAILSTGVLLGMLIALPVALTYYVLLAL 359
GIVPF+FAREY +HP I S V GMLI+LP+ YY+ L L
Sbjct: 708 GIVPFIFAREYGLHPDIWSNRVXFGMLISLPITFLYYIFLGL 583
>BI427388 homologue to GP|21435938|gb| PIN1-like auxin transport protein
{Populus tremula x Populus tremuloides}, partial (3%)
Length = 422
Score = 30.8 bits (68), Expect = 0.99
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 339 VLLGMLIALPVALTYYVLLAL 359
V+ GMLI+LP+ L YY+ L L
Sbjct: 224 VIFGMLISLPITLLYYIFLGL 286
>TC216999 similar to UP|Q9AUH6 (Q9AUH6) F-box containing protein TIR1,
partial (38%)
Length = 1338
Score = 30.4 bits (67), Expect = 1.3
Identities = 20/59 (33%), Positives = 27/59 (44%)
Frame = +3
Query: 242 QSITILSSGGLGMATFSLGLFMASNSTIIACGPRMTMVAIGLKFLVGPALMAVASIVIG 300
+ I LS+GG M G F + C P T +++ L FLV A+MA IG
Sbjct: 798 KKILALSNGGWSMKQDGTGDFKYKPARRFLCYPWQTKLSLQLLFLVWAAVMAGHKATIG 974
>TC232536 similar to UP|Q6SW48 (Q6SW48) UL95, partial (4%)
Length = 662
Score = 30.0 bits (66), Expect = 1.7
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Frame = -3
Query: 159 PARTMPATPPSQGTGES--------ETSQELQSKEEEEAEHRPGRK----LRILLILTKV 206
P R P PP +GE E ++ Q +EEE+ H P L L++ ++
Sbjct: 606 PPRPRPPPPPEHNSGEESPPEEPPQEIKEQQQQREEEQHSHSPSNS*VAVLSALILHFQM 427
Query: 207 GKKLIKNPNTYATFIGLIWSSIH 229
KK K P + +++S+++
Sbjct: 426 YKK--KKPRCNNVALMMLFSNLN 364
>BE610975
Length = 295
Score = 29.6 bits (65), Expect = 2.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 158 IPARTMPATPPSQGTGESETSQELQSKEEEEAE 190
I T ATP +G E E ++E+ +EEEEAE
Sbjct: 61 ITMSTQTATPVIKGEEEKEGTKEVVQEEEEEAE 159
>TC230252 similar to UP|Q40793 (Q40793) Tyrosine-rich hydroxyproline-rich
glycoprotein (Fragment), partial (42%)
Length = 506
Score = 29.6 bits (65), Expect = 2.2
Identities = 26/84 (30%), Positives = 41/84 (47%), Gaps = 3/84 (3%)
Frame = +1
Query: 101 IITGLSLSTLPNTLILGIPLMKAMYKDEADALLPQIIFLQSMIWYNLLLFLHELDAAIPA 160
++ +S ST+PN+L+L + + LL QI S I Y+LLL L + +
Sbjct: 16 LLLQVSTSTIPNSLLLQV--------SSSTTLLLQIS--SSSIPYSLLL*LSSSTSCVSP 165
Query: 161 RTMPATPP---SQGTGESETSQEL 181
+P+ PP +G+G S Q L
Sbjct: 166 TPLPSAPPPFDCEGSG*SLQLQVL 237
>TC222870
Length = 694
Score = 29.3 bits (64), Expect = 2.9
Identities = 33/120 (27%), Positives = 59/120 (48%), Gaps = 3/120 (2%)
Frame = +2
Query: 47 ANFSIPLLSFQVISSNNVYKMSLKLIYADCIQKLLAILALTLIIKISARGGLKWIITGLS 106
+N S+P+L +V S + Y + Y D +Q L ++ +T+ I+ S RG K II +
Sbjct: 317 SNVSVPMLDEEVRSVMHSYGIMNDKHYVDPLQVLESL--VTIFIEGSGRGLCKRIIAVIK 490
Query: 107 LSTLPNTLILGIPLMKAMYKDEADALLPQIIFLQSMIWY---NLLLFLHELDAAIPARTM 163
+ NT LG+ + K + L Q++ L++ + N L+ H + AA A+ +
Sbjct: 491 AA---NT--LGLSFFEGFNKQPIELL--QLLSLKAQDSFEEANFLVQTHPMPAASIAQIL 649
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.325 0.140 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,504,362
Number of Sequences: 63676
Number of extensions: 207237
Number of successful extensions: 1558
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1556
length of query: 359
length of database: 12,639,632
effective HSP length: 98
effective length of query: 261
effective length of database: 6,399,384
effective search space: 1670239224
effective search space used: 1670239224
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0391.5