TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0391.14
         (76 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW278243                                                               64  1e-11
TC224160                                                               39  2e-09
TC209668 homologue to UP|PAL2_CICAR (Q9SMK9) Phenylalanine ammon...    27  1.5
TC215150 homologue to UP|Q9XGX6 (Q9XGX6) Cellulose synthase cata...    26  4.3
TC219623                                                               25  5.6
TC205413 homologue to GB|AAP12863.1|30017259|BT006214 At4g19050 ...    25  9.5
TC216541                                                               25  9.5

>AW278243 
          Length = 372

 Score = 64.3 bits (155), Expect = 1e-11
 Identities = 26/68 (38%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
 Frame = +1

Query: 4  FSFSYFLQIQPIIASSRVVLELKDVEYQWHAFI--KNGNTVYVGLLWIPAVLIYLMDIQI 61
          F+F+YFLQI+P++  +R +++  ++ Y WH F+   N N + V  +W P V IYL+DI +
Sbjct: 28 FAFAYFLQIRPLVDPTRAIIKEDNINYSWHDFVSKNNHNALTVVSVWAPVVAIYLLDIYV 207

Query: 62 WYAIYSSL 69
          +Y + S++
Sbjct: 208FYTLVSAV 231


>TC224160 
          Length = 932

 Score = 38.5 bits (88), Expect(2) = 2e-09
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +3

Query: 47  LWIPAVLIYLMDIQIWYAIYSSL 69
           LW P +L+Y MD QIWYA++++L
Sbjct: 582 LWAPVLLVYFMDTQIWYALFTTL 650



 Score = 37.7 bits (86), Expect(2) = 2e-09
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = +1

Query: 4   FSFSYFLQIQPIIASSRVVLELKDVEYQWHAF 35
           F FS+F+QI+P++  ++ ++ +  V Y WHAF
Sbjct: 448 FLFSFFVQIKPLVRPTKDIMSIPRVNYGWHAF 543


>TC209668 homologue to UP|PAL2_CICAR (Q9SMK9) Phenylalanine ammonia-lyase 2
           , partial (43%)
          Length = 940

 Score = 27.3 bits (59), Expect = 1.5
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 10  LQIQPIIASSRVVLELKDVEYQWHAFIKNGNTV 42
           LQI  ++A    +++ K ++ QWH  ++N NT+
Sbjct: 223 LQI*QLVAIRA*IMDSKVLKLQWHPIVQNFNTL 321


>TC215150 homologue to UP|Q9XGX6 (Q9XGX6) Cellulose synthase catalytic
           subunit, partial (12%)
          Length = 712

 Score = 25.8 bits (55), Expect = 4.3
 Identities = 14/36 (38%), Positives = 16/36 (43%)
 Frame = +3

Query: 32  WHAFIKNGNTVYVGLLWIPAVLIYLMDIQIWYAIYS 67
           WH FI N NT    +LW   VL    +  I Y   S
Sbjct: 537 WHCFICNTNTNVPPVLWCSYVL*ANSEAHILYVYIS 644


>TC219623 
          Length = 626

 Score = 25.4 bits (54), Expect = 5.6
 Identities = 7/26 (26%), Positives = 18/26 (68%)
 Frame = +2

Query: 44  VGLLWIPAVLIYLMDIQIWYAIYSSL 69
           +G+LW+  +L+ L ++ +W  +++ L
Sbjct: 254 IGILWVGLLLLGL*ELMVWEILFAPL 331


>TC205413 homologue to GB|AAP12863.1|30017259|BT006214 At4g19050 {Arabidopsis
           thaliana;} , complete
          Length = 1073

 Score = 24.6 bits (52), Expect = 9.5
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -2

Query: 2   IFFSFSYFLQIQPIIASSRVVLELKDVEYQWHAFIKNGNTVYVGLLWIPAVLIYL 56
           +FF    FL+++ +  S   +   + +EY  H F+K G      LLW    +I L
Sbjct: 640 LFFEAHNFLKVRMVYVS---IYTEQPLEYCLHNFLKVGRKW*TKLLWEYGFIIKL 485


>TC216541 
          Length = 726

 Score = 24.6 bits (52), Expect = 9.5
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
 Frame = +3

Query: 12  IQPIIASSRVVLELK-DVEYQWHAFIKNGNTVYVGL-----LWIPAVLIYLMDIQIWYAI 65
           I P +ASS   L +   V Y     + +G+ + + L     L +  VL+ LMD+Q  Y  
Sbjct: 156 ISPSVASSTPHLPVHLAVSYFLGVLLLDGHLLLLALELELDLHMQNVLVCLMDLQQIYPY 335

Query: 66  YSSLKMKL 73
             SLK+ L
Sbjct: 336 LRSLKLLL 359


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.333    0.146    0.478 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,322,501
Number of Sequences: 63676
Number of extensions: 55880
Number of successful extensions: 509
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of query: 76
length of database: 12,639,632
effective HSP length: 52
effective length of query: 24
effective length of database: 9,328,480
effective search space: 223883520
effective search space used: 223883520
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 52 (24.6 bits)