BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0387.5
(124 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC214094 175 5e-45
TC205443 170 2e-43
TC205445 150 1e-37
TC214371 weakly similar to UP|Q99738 (Q99738) Pinin, partial (3%) 119 5e-28
TC205444 similar to UP|Q89SB2 (Q89SB2) Bll2493 protein, partial ... 64 2e-11
TC234319 similar to UP|Q8L9P8 (Q8L9P8) RALF, partial (55%) 29 0.49
TC218505 UP|Q7XY14 (Q7XY14) C-type cytochrome biogenesis protein... 27 1.8
TC233011 similar to UP|Q9SDX4 (Q9SDX4) Dynamin homolog, partial ... 27 2.4
TC228041 similar to UP|Q9LPZ8 (Q9LPZ8) T23J18.3, partial (11%) 27 3.2
BM732210 similar to GP|13506739|gb| WRKY DNA-binding protein 6 {... 26 4.1
BF068319 26 5.4
AI440940 26 5.4
CO985232 26 5.4
BF070582 similar to GP|10281006|dbj pseudo-response regulator 5 ... 25 7.0
BE608652 similar to GP|10177819|db dihydroorotate dehydrogenase ... 25 7.0
AW433166 weakly similar to SP|Q9ZRS8|R37A_P 60S ribosomal protei... 25 9.2
TC223491 similar to UP|Q9FG35 (Q9FG35) Emb|CAB82953.1, partial (... 25 9.2
TC219379 similar to UP|Q941E8 (Q941E8) AT3g04880/T9J14_17, parti... 25 9.2
AW397451 similar to PIR|S20007|S200 beta-conglycinin alpha chain... 25 9.2
TC234646 25 9.2
>TC214094
Length = 807
Score = 175 bits (443), Expect = 5e-45
Identities = 90/122 (73%), Positives = 101/122 (82%), Gaps = 3/122 (2%)
Frame = +1
Query: 1 MEVAVELEDDLFFADLSKQLSLLIMDEDDDPLASCAVHP-QSFSGAIHPPPQSAILYEQV 59
MEVA+ELEDDLFFADLSK+++LLIMDED+DPLASC Q+FSGAIHPPPQ A +YE
Sbjct: 106 MEVAMELEDDLFFADLSKEIALLIMDEDEDPLASCPPDSLQAFSGAIHPPPQFAFIYEHA 285
Query: 60 LRRQSKGTGVFIPQSTQPRRKQRKGR--TSSYAKYQKQSQDTRMISHVPIKNPFKETNDR 117
LRR+SKGTGVFIPQ+TQPRRKQRKGR +SYAK+QKQSQDTRM S VP KN FK N
Sbjct: 286 LRRESKGTGVFIPQATQPRRKQRKGRANNNSYAKHQKQSQDTRMASQVPNKNSFKSRNG* 465
Query: 118 AY 119
Y
Sbjct: 466 GY 471
>TC205443
Length = 784
Score = 170 bits (430), Expect = 2e-43
Identities = 87/121 (71%), Positives = 98/121 (80%), Gaps = 1/121 (0%)
Frame = +3
Query: 1 MEVAVELEDDLFFADLSKQLSLLIMDEDDDPLASCAVHP-QSFSGAIHPPPQSAILYEQV 59
MEVAVELEDDLFFADLSKQ+S LIMDED+DPL +C Q+F G+I+PPPQS LYEQ
Sbjct: 75 MEVAVELEDDLFFADLSKQISQLIMDEDEDPLPTCPPDSLQTFPGSIYPPPQSGFLYEQA 254
Query: 60 LRRQSKGTGVFIPQSTQPRRKQRKGRTSSYAKYQKQSQDTRMISHVPIKNPFKETNDRAY 119
L RQSKGTGVFIPQSTQPRRK RKGR+SS AKYQKQ+QDT+ +S VPI + FK N Y
Sbjct: 255 LIRQSKGTGVFIPQSTQPRRKHRKGRSSSNAKYQKQTQDTKTVSQVPITSSFKPKNG*GY 434
Query: 120 I 120
I
Sbjct: 435 I 437
>TC205445
Length = 706
Score = 150 bits (380), Expect = 1e-37
Identities = 82/120 (68%), Positives = 90/120 (74%)
Frame = +2
Query: 1 MEVAVELEDDLFFADLSKQLSLLIMDEDDDPLASCAVHPQSFSGAIHPPPQSAILYEQVL 60
MEVAVELEDDLFFADLSKQ+S LIMDED+DPL +C P S QS LYEQ L
Sbjct: 50 MEVAVELEDDLFFADLSKQISQLIMDEDEDPLPTCP--PDSL--------QSGFLYEQAL 199
Query: 61 RRQSKGTGVFIPQSTQPRRKQRKGRTSSYAKYQKQSQDTRMISHVPIKNPFKETNDRAYI 120
RQSKGTGVFIPQSTQPRRK RKGR+SS AKYQKQ+QDT+ +S VPI + FK N YI
Sbjct: 200 IRQSKGTGVFIPQSTQPRRKHRKGRSSSNAKYQKQTQDTKTVSQVPITSSFKPKNG*GYI 379
>TC214371 weakly similar to UP|Q99738 (Q99738) Pinin, partial (3%)
Length = 779
Score = 119 bits (297), Expect = 5e-28
Identities = 61/90 (67%), Positives = 69/90 (75%), Gaps = 7/90 (7%)
Frame = +1
Query: 40 QSFSGAIHPPPQSAILYEQVLRRQSKGTGVFIPQSTQPRRKQRKGR-TSSYAKYQKQSQD 98
Q+FSGAIHPPPQ A ++E LRR+SKGTGVFIPQ+T PRRKQRKGR +SYAK+QKQSQD
Sbjct: 346 QAFSGAIHPPPQFAFIFEHALRRESKGTGVFIPQATHPRRKQRKGRANNSYAKHQKQSQD 525
Query: 99 TRMISHVPIKNPFKETND------RAYIDP 122
TRM+S VP KN FK N YIDP
Sbjct: 526 TRMVSQVPNKNSFKSRNG*EYYIILDYIDP 615
Score = 62.8 bits (151), Expect = 4e-11
Identities = 32/56 (57%), Positives = 39/56 (69%)
Frame = +3
Query: 1 MEVAVELEDDLFFADLSKQLSLLIMDEDDDPLASCAVHPQSFSGAIHPPPQSAILY 56
MEVA+ELEDDLFFAD SK++++LIMDED+DPLASC PP +LY
Sbjct: 87 MEVAMELEDDLFFADSSKEIAVLIMDEDEDPLASC------------PPDSLQVLY 218
>TC205444 similar to UP|Q89SB2 (Q89SB2) Bll2493 protein, partial (4%)
Length = 430
Score = 63.9 bits (154), Expect = 2e-11
Identities = 30/35 (85%), Positives = 33/35 (93%)
Frame = +3
Query: 1 MEVAVELEDDLFFADLSKQLSLLIMDEDDDPLASC 35
MEVAVELEDDLFFADLSKQ+S LIMDED+DPL +C
Sbjct: 54 MEVAVELEDDLFFADLSKQISQLIMDEDEDPLPTC 158
>TC234319 similar to UP|Q8L9P8 (Q8L9P8) RALF, partial (55%)
Length = 421
Score = 29.3 bits (64), Expect = 0.49
Identities = 15/54 (27%), Positives = 29/54 (52%), Gaps = 1/54 (1%)
Frame = -2
Query: 11 LFFADLSKQLSLLIMDEDDDPLASC-AVHPQSFSGAIHPPPQSAILYEQVLRRQ 63
L A++ + +SL M+ P +H S GA+ PP SA++ +++ R++
Sbjct: 243 LVLANMRRLISLSNMNSSSAPSMEMEGIHVISIPGAVPAPPASAVVADEIRRKR 82
>TC218505 UP|Q7XY14 (Q7XY14) C-type cytochrome biogenesis protein, complete
Length = 1218
Score = 27.3 bits (59), Expect = 1.8
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 63 QSKGTGVFIPQSTQPRRKQRKGRTSSYAKYQKQSQDTRMISHVPIKNP 110
+ + + V + Q QPR K++ + QSQD M H+P + P
Sbjct: 1007 EMRASSVMLQQKKQPRVKEKHSQLCKSKVSCLQSQDPWMQQHIPKEWP 864
>TC233011 similar to UP|Q9SDX4 (Q9SDX4) Dynamin homolog, partial (3%)
Length = 347
Score = 26.9 bits (58), Expect = 2.4
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Frame = +2
Query: 7 LEDDLFFADLSKQLSLLIMDEDDD--------PLASCAVH 38
+ED L +DL Q L+ DEDDD PL+S ++H
Sbjct: 179 IEDLLELSDLMHQAMTLLPDEDDDESSNS*RLPLSSRSLH 298
>TC228041 similar to UP|Q9LPZ8 (Q9LPZ8) T23J18.3, partial (11%)
Length = 465
Score = 26.6 bits (57), Expect = 3.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 49 PPQSAILYEQVLRRQSKGTGVFIPQSTQPRRKQR 82
PP SA ++LRR + P+S PRR++R
Sbjct: 375 PPASAATPRRLLRRHRRPPPRSDPRSPSPRRRER 274
>BM732210 similar to GP|13506739|gb| WRKY DNA-binding protein 6 {Arabidopsis
thaliana}, partial (20%)
Length = 425
Score = 26.2 bits (56), Expect = 4.1
Identities = 16/43 (37%), Positives = 19/43 (43%)
Frame = +3
Query: 39 PQSFSGAIHPPPQSAILYEQVLRRQSKGTGVFIPQSTQPRRKQ 81
PQ F PPQ L Q L QSK +G+ + Q P Q
Sbjct: 69 PQDFIAG-STPPQLPQLIAQALYNQSKFSGLQLSQDVGPNNSQ 194
>BF068319
Length = 368
Score = 25.8 bits (55), Expect = 5.4
Identities = 13/49 (26%), Positives = 25/49 (50%)
Frame = -2
Query: 32 LASCAVHPQSFSGAIHPPPQSAILYEQVLRRQSKGTGVFIPQSTQPRRK 80
+A+C VH A+H +LY ++ R + K F ++ +P+R+
Sbjct: 301 IAACEVHT-----AMHNNSYPFLLYREIARNKRKEGNAFQNRNRKPKRE 170
>AI440940
Length = 302
Score = 25.8 bits (55), Expect = 5.4
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 62 RQSKGTGVFIPQSTQPRRKQRKGRTSSYAKYQKQSQDTR-MISHVP 106
R + G +F S PRRK R+GR S K K ++ R I++VP
Sbjct: 45 RHAAGVALFHSGSF-PRRKARRGRNSPERKQFKARRNLRSRIANVP 179
>CO985232
Length = 777
Score = 25.8 bits (55), Expect = 5.4
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 69 VFIPQSTQPRRKQRKGRTSSYAKYQKQSQDTRMISHVPIKNP 110
V + Q QPR K++ + QSQD M H+P + P
Sbjct: 406 VMLQQKKQPRVKEKHSQLCKSKVSCLQSQDPWMQQHIPKEWP 531
>BF070582 similar to GP|10281006|dbj pseudo-response regulator 5 {Arabidopsis
thaliana}, partial (7%)
Length = 410
Score = 25.4 bits (54), Expect = 7.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 55 LYEQVLRRQSKGTGVFIPQSTQPRRKQRKGRTSSYAKYQKQSQDTRMI 102
L++ V RRQS TG+ PQ +++ + + A + S D I
Sbjct: 304 LWQHVWRRQSSTTGINGPQDESVAQQKVEATAENNAASNRSSGDAACI 161
>BE608652 similar to GP|10177819|db dihydroorotate dehydrogenase precursor
{Arabidopsis thaliana}, partial (33%)
Length = 438
Score = 25.4 bits (54), Expect = 7.0
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -2
Query: 64 SKGTGVFIPQSTQPRRKQRKGRTSSYAKYQKQSQDTRMISHVP 106
S GTGV P ST+P+ + K T+S + ++ T + + +P
Sbjct: 326 SWGTGVTEPTSTKPKPRASKPSTASAFLSKPAARPTGLENFLP 198
>AW433166 weakly similar to SP|Q9ZRS8|R37A_P 60S ribosomal protein L37a.
[Douglas-fir] {Pseudotsuga menziesii}, partial (39%)
Length = 169
Score = 25.0 bits (53), Expect = 9.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 41 SFSGAIHPPPQSAILYEQVLRRQSK 65
+FS ++HP A LY+ + R+SK
Sbjct: 129 AFSQSLHPHTPIAFLYQAIFPRKSK 55
>TC223491 similar to UP|Q9FG35 (Q9FG35) Emb|CAB82953.1, partial (19%)
Length = 600
Score = 25.0 bits (53), Expect = 9.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 69 VFIPQSTQPRRKQRKGRTSSYAKYQK 94
+F+PQ + R K + SSY K QK
Sbjct: 460 LFLPQKERERNKPYRAIFSSYVKVQK 537
>TC219379 similar to UP|Q941E8 (Q941E8) AT3g04880/T9J14_17, partial (81%)
Length = 1003
Score = 25.0 bits (53), Expect = 9.2
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 30 DPLASCAVHPQSFSGAIHPPPQSAILYEQVL-RRQSKGTGVFIPQSTQPR 78
+PL + P+S + + +PPP +++ S + IP ST PR
Sbjct: 180 EPLPTTPPEPRSVAESTNPPPPTSVASSPAAPAPASPSSPTNIPASTPPR 329
>AW397451 similar to PIR|S20007|S200 beta-conglycinin alpha chain precursor -
soybean, partial (10%)
Length = 187
Score = 25.0 bits (53), Expect = 9.2
Identities = 12/31 (38%), Positives = 18/31 (57%)
Frame = -2
Query: 58 QVLRRQSKGTGVFIPQSTQPRRKQRKGRTSS 88
Q LRR +G+G+ Q P KQ + R++S
Sbjct: 126 QQLRRHVRGSGLSFSQ*AIPNDKQNEARSTS 34
>TC234646
Length = 648
Score = 25.0 bits (53), Expect = 9.2
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 14 ADLSKQLSLLIMDEDDDPLASCAV 37
++L L+L ++D +DD L+ C+V
Sbjct: 224 SNLQSHLNLALLDVEDDSLSMCSV 295
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.316 0.131 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,914,104
Number of Sequences: 63676
Number of extensions: 61494
Number of successful extensions: 416
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of query: 124
length of database: 12,639,632
effective HSP length: 85
effective length of query: 39
effective length of database: 7,227,172
effective search space: 281859708
effective search space used: 281859708
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0387.5