BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0383.7
(316 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC205462 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MS... 47 9e-06
TC205461 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MS... 47 9e-06
TC225553 weakly similar to UP|Q06106 (Q06106) Ypr112cp, partial ... 44 1e-04
BM523130 43 2e-04
CD393416 weakly similar to GP|15822703|gb| RNA-binding protein p... 42 3e-04
BM086366 42 5e-04
TC225576 similar to UP|Q9AT32 (Q9AT32) Poly(A)-binding protein, ... 41 6e-04
TC204084 UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein, co... 41 8e-04
TC227320 similar to UP|Q93YF1 (Q93YF1) Nucleic acid binding prot... 41 8e-04
TC212751 weakly similar to UP|Q41518 (Q41518) Single-stranded nu... 41 8e-04
TC232472 similar to UP|Q9FYB0 (Q9FYB0) SC35-like splicing factor... 40 0.001
TC214650 similar to UP|Q9LJH8 (Q9LJH8) RNA binding protein nucle... 40 0.001
TC215532 similar to UP|Q84LL8 (Q84LL8) Salt tolerance protein 4,... 40 0.001
TC215533 similar to UP|Q84LL8 (Q84LL8) Salt tolerance protein 4,... 40 0.001
TC215891 similar to GB|AAM78058.1|21928059|AY125548 AT5g61030/ma... 40 0.001
TC226202 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp... 40 0.002
TC227154 similar to UP|Q9LJH8 (Q9LJH8) RNA binding protein nucle... 40 0.002
TC211515 39 0.003
TC209402 39 0.003
TC217707 similar to UP|Q941H8 (Q941H8) RNA-binding protein precu... 39 0.003
>TC205462 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MSJ1_4
{Arabidopsis thaliana;} , partial (54%)
Length = 1403
Score = 47.4 bits (111), Expect = 9e-06
Identities = 22/79 (27%), Positives = 44/79 (54%)
Frame = +3
Query: 35 FTIFVDGVSDNVSYHDLRRMFERYGVLHGVFLQRRRKQGRKSRFAFIRFKYEQDACEAIR 94
+++ V ++ + DL +F++YG + +F+ + R+ G FAF+R+KY +A +A+
Sbjct: 135 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVE 314
Query: 95 SLNGSWFFESFLMVNRARY 113
L+G + V A+Y
Sbjct: 315 RLDGRMVDGREITVQFAKY 371
>TC205461 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MSJ1_4
{Arabidopsis thaliana;} , partial (69%)
Length = 1148
Score = 47.4 bits (111), Expect = 9e-06
Identities = 22/79 (27%), Positives = 44/79 (54%)
Frame = +3
Query: 35 FTIFVDGVSDNVSYHDLRRMFERYGVLHGVFLQRRRKQGRKSRFAFIRFKYEQDACEAIR 94
+++ V ++ + DL +F++YG + +F+ + R+ G FAF+R+KY +A +A+
Sbjct: 138 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVE 317
Query: 95 SLNGSWFFESFLMVNRARY 113
L+G + V A+Y
Sbjct: 318 RLDGRMVDGREITVQFAKY 374
>TC225553 weakly similar to UP|Q06106 (Q06106) Ypr112cp, partial (6%)
Length = 1371
Score = 43.5 bits (101), Expect = 1e-04
Identities = 33/142 (23%), Positives = 66/142 (46%)
Frame = +1
Query: 12 VSRPEVVGSHGVDRQQWRTDKKVFTIFVDGVSDNVSYHDLRRMFERYGVLHGVFLQRRRK 71
+ +P V + G ++ D+ + + V+ + DLRR+F +G + L+ K
Sbjct: 727 ILQPCNVKNDGQKQKTLEKDRSSTKLLIKNVAFEATEKDLRRLFSPFGQIKS--LRLPMK 900
Query: 72 QGRKSRFAFIRFKYEQDACEAIRSLNGSWFFESFLMVNRARYDYTNRRNVTNRHSKVWKQ 131
G FAF+ + +Q+A A+++L+ + + L++ RA+ ++ ++ Q
Sbjct: 901 FGNHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVIERAK----EAESLEELRARTAAQ 1068
Query: 132 KFVGEKQAFGQETVVSEGRKQV 153
F E+ F S+ RKQV
Sbjct: 1069-FSDEQNGFQSAMKFSKKRKQV 1131
>BM523130
Length = 429
Score = 43.1 bits (100), Expect = 2e-04
Identities = 20/48 (41%), Positives = 29/48 (59%)
Frame = +2
Query: 50 DLRRMFERYGVLHGVFLQRRRKQGRKSRFAFIRFKYEQDACEAIRSLN 97
DLR FERYG + V+L + G F F++++Y +DA EA + LN
Sbjct: 269 DLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQHLN 412
>CD393416 weakly similar to GP|15822703|gb| RNA-binding protein precursor
{Nicotiana tabacum}, partial (29%)
Length = 733
Score = 42.4 bits (98), Expect = 3e-04
Identities = 22/62 (35%), Positives = 33/62 (52%)
Frame = -2
Query: 37 IFVDGVSDNVSYHDLRRMFERYGVLHGVFLQRRRKQGRKSRFAFIRFKYEQDACEAIRSL 96
+FV G+S + LR F RYG + V + R+ GR F F+ F +DA AI+ +
Sbjct: 675 LFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFVTFATSEDASSAIQGM 496
Query: 97 NG 98
+G
Sbjct: 495 DG 490
>BM086366
Length = 427
Score = 41.6 bits (96), Expect = 5e-04
Identities = 24/76 (31%), Positives = 37/76 (48%)
Frame = +2
Query: 37 IFVDGVSDNVSYHDLRRMFERYGVLHGVFLQRRRKQGRKSRFAFIRFKYEQDACEAIRSL 96
IFV G+S V+ L F RYG + + R GR F FI F + +AI+ +
Sbjct: 95 IFVGGLSWEVTERQLEHAFARYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 274
Query: 97 NGSWFFESFLMVNRAR 112
+G + + VN+A+
Sbjct: 275 HGREIGDRIISVNKAQ 322
>TC225576 similar to UP|Q9AT32 (Q9AT32) Poly(A)-binding protein, partial
(93%)
Length = 2491
Score = 41.2 bits (95), Expect = 6e-04
Identities = 20/75 (26%), Positives = 37/75 (48%)
Frame = +3
Query: 24 DRQQWRTDKKVFTIFVDGVSDNVSYHDLRRMFERYGVLHGVFLQRRRKQGRKSRFAFIRF 83
DR+ + K ++V +S++ + +L + F YG + + R G+ F F+ F
Sbjct: 864 DRENALSKTKFNNVYVKNLSESTTDEELMKFFGEYGTITSAVIM-RDADGKSRCFGFVNF 1040
Query: 84 KYEQDACEAIRSLNG 98
+ DA +A+ LNG
Sbjct: 1041ENPDDAAKAVEGLNG 1085
>TC204084 UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein, complete
Length = 1937
Score = 40.8 bits (94), Expect = 8e-04
Identities = 24/78 (30%), Positives = 37/78 (46%)
Frame = +2
Query: 35 FTIFVDGVSDNVSYHDLRRMFERYGVLHGVFLQRRRKQGRKSRFAFIRFKYEQDACEAIR 94
+ FV G++ H L R F +YG + + R+ GR F F+ F EQ +AI
Sbjct: 1241 YRCFVGGLAWATDDHALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQSMKDAIG 1420
Query: 95 SLNGSWFFESFLMVNRAR 112
++NG + VN A+
Sbjct: 1421 AMNGQNLDGRNITVNEAQ 1474
>TC227320 similar to UP|Q93YF1 (Q93YF1) Nucleic acid binding protein, partial
(70%)
Length = 1724
Score = 40.8 bits (94), Expect = 8e-04
Identities = 26/73 (35%), Positives = 38/73 (51%)
Frame = +1
Query: 27 QWRTDKKVFTIFVDGVSDNVSYHDLRRMFERYGVLHGVFLQRRRKQGRKSRFAFIRFKYE 86
Q D TIFV G+ NVS DLR+ F +YG + V + + G F++F
Sbjct: 994 QSEADSTNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCG------FVQFANR 1155
Query: 87 QDACEAIRSLNGS 99
+A EA++ LNG+
Sbjct: 1156 NNAEEALQKLNGT 1194
>TC212751 weakly similar to UP|Q41518 (Q41518) Single-stranded nucleic acid
binding protein, partial (24%)
Length = 462
Score = 40.8 bits (94), Expect = 8e-04
Identities = 23/76 (30%), Positives = 41/76 (53%)
Frame = +3
Query: 37 IFVDGVSDNVSYHDLRRMFERYGVLHGVFLQRRRKQGRKSRFAFIRFKYEQDACEAIRSL 96
IFV G+ + S L ++F +G + + L ++ G+ FA+I F E+ A A+ +
Sbjct: 234 IFVKGLPLSTSEGHLMKVFSEFGEVTLIQLPIDKESGQSLGFAYIWFVKEESAQLAVLEM 413
Query: 97 NGSWFFESFLMVNRAR 112
NG +F+ F+ V A+
Sbjct: 414 NGKFFYGRFIYVTIAK 461
>TC232472 similar to UP|Q9FYB0 (Q9FYB0) SC35-like splicing factor SCL28, 28
kD, partial (38%)
Length = 429
Score = 40.4 bits (93), Expect = 0.001
Identities = 18/43 (41%), Positives = 26/43 (59%)
Frame = +3
Query: 50 DLRRMFERYGVLHGVFLQRRRKQGRKSRFAFIRFKYEQDACEA 92
DLR FERYG + V+L + G F F++++Y +DA EA
Sbjct: 291 DLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEA 419
>TC214650 similar to UP|Q9LJH8 (Q9LJH8) RNA binding protein nucleolysin;
oligouridylate binding protein (AT3g14100/MAG2_5),
partial (93%)
Length = 1684
Score = 40.4 bits (93), Expect = 0.001
Identities = 23/66 (34%), Positives = 30/66 (44%)
Frame = +2
Query: 35 FTIFVDGVSDNVSYHDLRRMFERYGVLHGVFLQRRRKQGRKSRFAFIRFKYEQDACEAIR 94
F IFV +S V+ L F Y + +K GR F F+ F+ +QDA AI
Sbjct: 599 FNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 778
Query: 95 SLNGSW 100
L G W
Sbjct: 779 DLTGKW 796
>TC215532 similar to UP|Q84LL8 (Q84LL8) Salt tolerance protein 4, partial
(79%)
Length = 1070
Score = 40.4 bits (93), Expect = 0.001
Identities = 23/75 (30%), Positives = 36/75 (47%)
Frame = +3
Query: 37 IFVDGVSDNVSYHDLRRMFERYGVLHGVFLQRRRKQGRKSRFAFIRFKYEQDACEAIRSL 96
I V GV + DL+ F YG + + L R+ G +A I ++ ++A AI +L
Sbjct: 417 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEARNAIENL 596
Query: 97 NGSWFFESFLMVNRA 111
NGS + V+ A
Sbjct: 597 NGSELLTQTIYVDWA 641
>TC215533 similar to UP|Q84LL8 (Q84LL8) Salt tolerance protein 4, partial
(79%)
Length = 1124
Score = 40.4 bits (93), Expect = 0.001
Identities = 23/75 (30%), Positives = 36/75 (47%)
Frame = +3
Query: 37 IFVDGVSDNVSYHDLRRMFERYGVLHGVFLQRRRKQGRKSRFAFIRFKYEQDACEAIRSL 96
I V GV + DL+ F YG + + L R+ G +A I ++ ++A AI +L
Sbjct: 396 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEARNAIENL 575
Query: 97 NGSWFFESFLMVNRA 111
NGS + V+ A
Sbjct: 576 NGSELLTQTIYVDWA 620
>TC215891 similar to GB|AAM78058.1|21928059|AY125548 AT5g61030/maf19_30
{Arabidopsis thaliana;} , partial (41%)
Length = 782
Score = 40.0 bits (92), Expect = 0.001
Identities = 23/75 (30%), Positives = 37/75 (48%)
Frame = +2
Query: 37 IFVDGVSDNVSYHDLRRMFERYGVLHGVFLQRRRKQGRKSRFAFIRFKYEQDACEAIRSL 96
+F+ GVS + LR F +YG + + R+ GR F FI + ++A AI++L
Sbjct: 179 LFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQAL 358
Query: 97 NGSWFFESFLMVNRA 111
+G + VN A
Sbjct: 359 DGQDLHGRPIRVNYA 403
>TC226202 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp22 splicing
factor), partial (72%)
Length = 1003
Score = 39.7 bits (91), Expect = 0.002
Identities = 25/83 (30%), Positives = 42/83 (50%)
Frame = +3
Query: 30 TDKKVFTIFVDGVSDNVSYHDLRRMFERYGVLHGVFLQRRRKQGRKSRFAFIRFKYEQDA 89
+ +K+ ++V + V+ DL F +GV+ V++ RR +AFI F +DA
Sbjct: 21 SSEKMSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARR-----PPGYAFIDFDDRRDA 185
Query: 90 CEAIRSLNGSWFFESFLMVNRAR 112
+AIR L+G + L NR +
Sbjct: 186 QDAIRELDGMFRRIMLLECNRIK 254
>TC227154 similar to UP|Q9LJH8 (Q9LJH8) RNA binding protein nucleolysin;
oligouridylate binding protein (AT3g14100/MAG2_5),
partial (92%)
Length = 1698
Score = 39.7 bits (91), Expect = 0.002
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = +1
Query: 35 FTIFVDGVSDNVSYHDLRRMFERYGVLHGVFLQRRRKQGRKSRFAFIRFKYEQDACEAIR 94
+ IFV +S V+ L F Y + +K GR F F+ F+ +QDA AI
Sbjct: 583 YNIFVGDLSPEVTDATLFACFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 762
Query: 95 SLNGSW 100
L G W
Sbjct: 763 DLTGKW 780
>TC211515
Length = 736
Score = 38.9 bits (89), Expect = 0.003
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +1
Query: 37 IFVDGVSDNVSYHDLRRMFERYGVLHGVFLQRRRKQGRKSRFAFIRFKYEQDACEAIRSL 96
I V + +V+ +LR F G + R K G+ +FAFI ++ E +A EAIR
Sbjct: 229 ICVKNLPKDVAEDELREFFSGKGGIITDAKLMRTKDGKSRQFAFIGYRTEDEAQEAIRYF 408
Query: 97 NGSWFFESFLMVNRAR-YDYTNRRNVTNRHSK 127
N ++ S ++ AR + N +RHSK
Sbjct: 409 NKNFLRTSRIICEVARKHGDENLPRPWSRHSK 504
>TC209402
Length = 1163
Score = 38.9 bits (89), Expect = 0.003
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = +1
Query: 34 VFTIFVDGVSDNVSYHDLRRMFERYGVLHGVFLQRRRKQGRKSRFAFIRFKYEQDACEAI 93
V +++V + +N++ L+ +FE +G + V L + KSRF F+ F A +A+
Sbjct: 214 VKSVYVKNLPENITQDRLKELFEHHGKITKVVLPSAKSGQEKSRFGFVHFAERSSAMKAL 393
Query: 94 RS 95
++
Sbjct: 394 KN 399
>TC217707 similar to UP|Q941H8 (Q941H8) RNA-binding protein precursor,
partial (35%)
Length = 1008
Score = 38.9 bits (89), Expect = 0.003
Identities = 25/75 (33%), Positives = 36/75 (47%)
Frame = +1
Query: 37 IFVDGVSDNVSYHDLRRMFERYGVLHGVFLQRRRKQGRKSRFAFIRFKYEQDACEAIRSL 96
+FV G+S + LR RYG + V + R+ GR F FI F +DA AI+ +
Sbjct: 169 LFVGGISYSTDDMSLRESPARYGEVIDVKVIMDRETGRSRGFGFITFATSEDASYAIQGM 348
Query: 97 NGSWFFESFLMVNRA 111
+G + VN A
Sbjct: 349 DGQDLHGRRIRVNYA 393
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.137 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,737,922
Number of Sequences: 63676
Number of extensions: 173563
Number of successful extensions: 1162
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of query: 316
length of database: 12,639,632
effective HSP length: 97
effective length of query: 219
effective length of database: 6,463,060
effective search space: 1415410140
effective search space used: 1415410140
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0383.7