BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0383.6
(493 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC222141 homologue to UP|HMGI_HUMAN (P17096) High mobility group... 33 0.38
BM188086 similar to GP|18447765|gb fiddlehead-like protein {Goss... 31 1.1
TC206039 31 1.4
TC224713 similar to UP|Q6P7Y0 (Q6P7Y0) Zgc:63554 protein, partia... 30 1.9
TC231747 30 1.9
TC210783 weakly similar to UP|O14760 (O14760) Small intestinal m... 30 2.5
BI321563 30 2.5
TC204730 similar to UP|Q8LQF0 (Q8LQF0) OJ1529_G03.6 protein, par... 30 3.2
TC232974 weakly similar to GB|AAK54457.1|20384750|AY032998 DNA r... 29 4.2
TC227084 homologue to UP|LSM4_TOBAC (Q43582) Probable U6 snRNA-a... 29 4.2
CF922640 29 5.5
BE475018 similar to SP|Q9XGM2|MR11_ Double-strand break repair p... 29 5.5
TC235068 28 7.2
CD406148 28 7.2
TC229068 similar to UP|Q9LTA2 (Q9LTA2) Similarity to AT-hook DNA... 28 7.2
TC207461 similar to GB|AAK96599.1|15450655|AY052695 AT3g52740/F3... 28 7.2
TC209880 homologue to UP|Q9XFG0 (Q9XFG0) Cystathionine-gamma-syn... 28 7.2
TC227085 homologue to UP|LSM4_FAGSY (Q9ZRU9) Probable U6 snRNA-a... 28 9.4
TC207824 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F1... 28 9.4
TC231046 28 9.4
>TC222141 homologue to UP|HMGI_HUMAN (P17096) High mobility group protein
HMG-I/HMG-Y (HMG-I(Y)) (High mobility group AT-hook 1),
partial (11%)
Length = 564
Score = 32.7 bits (73), Expect = 0.38
Identities = 24/69 (34%), Positives = 34/69 (48%)
Frame = +1
Query: 401 GRKKGGLGALRGRKTEAKPKPKRGRPRGSKAKPKQQVIDLPISDDDFEWEDASARARHTW 460
G++ GG G+ +TE +P RGRP GSK KPK +I + A+A H
Sbjct: 235 GKEGGGAGS---GETEISRRP-RGRPAGSKNKPKPPII--------ITRDSANALKTHVM 378
Query: 461 KVAKQLGVV 469
+VA +V
Sbjct: 379 EVADGCDIV 405
>BM188086 similar to GP|18447765|gb fiddlehead-like protein {Gossypium
hirsutum}, partial (25%)
Length = 406
Score = 31.2 bits (69), Expect = 1.1
Identities = 19/54 (35%), Positives = 27/54 (49%), Gaps = 2/54 (3%)
Frame = +2
Query: 400 RGRKKGGLGALR--GRKTEAKPKPKRGRPRGSKAKPKQQVIDLPISDDDFEWED 451
RG ++G G +R GR KP+P +GR R S Q + +SDD +D
Sbjct: 227 RGARRGLHGDVRSPGRAVREKPRPTKGRGRPSSELQHLQPDTITLSDDHKPLQD 388
>TC206039
Length = 834
Score = 30.8 bits (68), Expect = 1.4
Identities = 17/44 (38%), Positives = 23/44 (51%)
Frame = -2
Query: 391 EILDKVKQRRGRKKGGLGALRGRKTEAKPKPKRGRPRGSKAKPK 434
+I K K+++ +KK G G K K KRGRPRG K +
Sbjct: 185 KIKKKKKKKKKKKKXXXGG-GGEPKXXKKKEKRGRPRGGXKKKR 57
Score = 28.5 bits (62), Expect = 7.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 395 KVKQRRGRKKGGLGALRGRKTEAKPKPKRGRPRGSKAKP 433
K K++RGR +GG RGRK RG+P+ + P
Sbjct: 107 KKKEKRGRPRGGXKKKRGRKN------PRGQPKKTPKPP 9
>TC224713 similar to UP|Q6P7Y0 (Q6P7Y0) Zgc:63554 protein, partial (39%)
Length = 1353
Score = 30.4 bits (67), Expect = 1.9
Identities = 24/89 (26%), Positives = 38/89 (41%), Gaps = 2/89 (2%)
Frame = +1
Query: 387 LSDTEILDKVKQRRGRKKGGLGALRGRKTEAKPKPKR--GRPRGSKAKPKQQVIDLPISD 444
L D D+ R G +GGL + + P KR + ++ P + LP+ +
Sbjct: 121 LLDIIFSDRATDRAGGSRGGL-RMADKYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEE 297
Query: 445 DDFEWEDASARARHTWKVAKQLGVVYKGR 473
+ FEW+ A R T + G +Y GR
Sbjct: 298 NIFEWQFAIRGPRDT----EFEGGIYHGR 372
>TC231747
Length = 431
Score = 30.4 bits (67), Expect = 1.9
Identities = 20/65 (30%), Positives = 29/65 (43%)
Frame = -1
Query: 14 SIPITTSREITVLLDGEIVKVMVEPDHSAGVYLASGMSSRNHKAMSEVSTSSSEHEGDEP 73
S+ + + +VL DG+ PDH G SG S+ + +S EGDE
Sbjct: 251 SVKLYIETDDSVLEDGKHGDHNRSPDHGGGA*NCSGCSAIGSRCWGALSRDGGGEEGDEE 72
Query: 74 VDEGQ 78
D+GQ
Sbjct: 71 -DDGQ 60
>TC210783 weakly similar to UP|O14760 (O14760) Small intestinal mucin MUC3
(Fragment), partial (5%)
Length = 735
Score = 30.0 bits (66), Expect = 2.5
Identities = 26/107 (24%), Positives = 48/107 (44%)
Frame = +3
Query: 72 EPVDEGQRDDGVVVTPRVTEKQTSESIDDMLEETVQHLREAGYSLEEIKDLAVLKDWNFE 131
E E +++DGV K+ E +++EE + +E G +EE K+
Sbjct: 429 EDAKEDKKEDGV--------KEAKEDKKEVVEEVKEDNKEDG--VEEAKE---------- 548
Query: 132 NFAGYRLEEGIEEVECVAAVNECKELAVVNVANGLSEYMLCNQIEAV 178
+ E+G+EEV+ V V+ KE+ +G+ E +++ V
Sbjct: 549 ----NKKEDGVEEVKEVKEVDGVKEIKEDKEVDGVKEVKEDKEVDGV 677
>BI321563
Length = 331
Score = 30.0 bits (66), Expect = 2.5
Identities = 14/37 (37%), Positives = 22/37 (58%)
Frame = +1
Query: 407 LGALRGRKTEAKPKPKRGRPRGSKAKPKQQVIDLPIS 443
LG+ G + + + RGRP GSK KPK ++ + +S
Sbjct: 94 LGSHEGSEPGSSGRRPRGRPAGSKNKPKPPIVIIFLS 204
>TC204730 similar to UP|Q8LQF0 (Q8LQF0) OJ1529_G03.6 protein, partial (97%)
Length = 2084
Score = 29.6 bits (65), Expect = 3.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 346 LSGWDKKSDGSIENNLVVGVQACIGHTN 373
L W + S+EN+L++ +CI HTN
Sbjct: 1770 LKKWTNSNRASVENSLMMAGTSCIAHTN 1853
>TC232974 weakly similar to GB|AAK54457.1|20384750|AY032998 DNA repair
protein XRCC3 {Arabidopsis thaliana;} , partial (40%)
Length = 909
Score = 29.3 bits (64), Expect = 4.2
Identities = 14/27 (51%), Positives = 15/27 (54%)
Frame = -2
Query: 399 RRGRKKGGLGALRGRKTEAKPKPKRGR 425
RRGR KGG G RGR+ RGR
Sbjct: 311 RRGRSKGGRGGRRGRRVRGGGGGGRGR 231
>TC227084 homologue to UP|LSM4_TOBAC (Q43582) Probable U6 snRNA-associated
Sm-like protein LSm4 (Glycine-rich protein 10) (GRP 10),
partial (83%)
Length = 926
Score = 29.3 bits (64), Expect = 4.2
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Frame = +3
Query: 391 EILDKV----KQRRGRKKGGLGALRGRKTEAKP--KPKRGRPRG 428
E++DKV K R RK G+G RGR E P +P +G RG
Sbjct: 369 EVIDKVQEETKSRADRKPPGVGRGRGRGREEGPGGRPTKGIGRG 500
>CF922640
Length = 590
Score = 28.9 bits (63), Expect = 5.5
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 400 RGRKKGGLGALRGRKTEAKPKPKRG-RPRGSK--AKPKQQ 436
RG+K GGLG +KT K PK+G P G K A P Q+
Sbjct: 253 RGKKPGGLGP--KKKTNGKAPPKKGFPPPGGKMGANPPQK 366
>BE475018 similar to SP|Q9XGM2|MR11_ Double-strand break repair protein
MRE11. [Mouse-ear cress] {Arabidopsis thaliana}, partial
(10%)
Length = 348
Score = 28.9 bits (63), Expect = 5.5
Identities = 13/34 (38%), Positives = 17/34 (49%)
Frame = -3
Query: 400 RGRKKGGLGALRGRKTEAKPKPKRGRPRGSKAKP 433
RGR++GG G + K +RGR RG P
Sbjct: 109 RGRRRGGRSRRGGARRRRKSPRRRGRSRGGAPHP 8
>TC235068
Length = 610
Score = 28.5 bits (62), Expect = 7.2
Identities = 14/37 (37%), Positives = 19/37 (50%)
Frame = -1
Query: 399 RRGRKKGGLGALRGRKTEAKPKPKRGRPRGSKAKPKQ 435
RRGR GL R P+RG PRG++ K ++
Sbjct: 154 RRGRGGRGLRTRHARPRGGT*GPRRGSPRGARCKARR 44
>CD406148
Length = 533
Score = 28.5 bits (62), Expect = 7.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 258 WGMNLRWPNNTWVMPSLLTGAGSSRRLIYDQNYG 291
W + WP+ + +P LL+ +GSSR++ ++G
Sbjct: 328 WVLQSSWPHCSPAIPPLLSKSGSSRKMELHSSWG 429
>TC229068 similar to UP|Q9LTA2 (Q9LTA2) Similarity to AT-hook DNA-binding
protein, partial (63%)
Length = 1039
Score = 28.5 bits (62), Expect = 7.2
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 405 GGLGALRGRKTEAKPKPKRGRPRGSKAKPKQQVI 438
GG G G E +P RGRP GSK +PK +I
Sbjct: 318 GGGGCSDGATIEVVRRP-RGRPPGSKNRPKPPLI 416
>TC207461 similar to GB|AAK96599.1|15450655|AY052695 AT3g52740/F3C22_140
{Arabidopsis thaliana;} , partial (48%)
Length = 1713
Score = 28.5 bits (62), Expect = 7.2
Identities = 18/75 (24%), Positives = 31/75 (41%)
Frame = -1
Query: 38 PDHSAGVYLASGMSSRNHKAMSEVSTSSSEHEGDEPVDEGQRDDGVVVTPRVTEKQTSES 97
P S + M + H+ E + ++ E++GD D+ +DD VT Q +
Sbjct: 1566 PHPSKDIIFDDNMELQQHQQEEESNINNHEYDGDNNRDKDDKDD-------VTTTQNPSA 1408
Query: 98 IDDMLEETVQHLREA 112
+ EE + EA
Sbjct: 1407 ASETNEEKIALQEEA 1363
>TC209880 homologue to UP|Q9XFG0 (Q9XFG0) Cystathionine-gamma-synthase
precursor , partial (32%)
Length = 587
Score = 28.5 bits (62), Expect = 7.2
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 392 ILDKVKQRRGRKKGGL--GALRGRKTEAKPKPKRGRPRGSKAKPK 434
++++ +Q GR+ G G GR+ A P+ R RPR S + P+
Sbjct: 321 VVEQQRQLSGRRGSGAARGHSSGRRHGASPRRPRRRPRTSSSLPR 455
>TC227085 homologue to UP|LSM4_FAGSY (Q9ZRU9) Probable U6 snRNA-associated
Sm-like protein LSm4 (Glycine-rich protein 2), partial
(61%)
Length = 758
Score = 28.1 bits (61), Expect = 9.4
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Frame = +1
Query: 390 TEILDKV----KQRRGRKKGGLGALRGRKTEAKP--KPKRGRPRG 428
++++DKV K R RK G+G RGR E P +P +G RG
Sbjct: 277 SKVIDKVQEETKSRADRKPPGVGRGRGRGREEGPGGRPTKGIGRG 411
>TC207824 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F18_180
{Arabidopsis thaliana;} , partial (38%)
Length = 847
Score = 28.1 bits (61), Expect = 9.4
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = -2
Query: 9 ILVDSSIPITTSREITVLLDGEIVKVMVEPDHSAGVYLASGMSSRNHKAMSEVSTSSSEH 68
I++ SS + T IT + + +P+H A Y S SS S + S H
Sbjct: 630 IIISSSKTVYT---ITKTQPFQFTEKKCQPNHDAEDYARSRPSSSWSSLTSRQPQAPSHH 460
Query: 69 EGDEPVDEGQ 78
D+P +GQ
Sbjct: 459 PSDQPSAQGQ 430
>TC231046
Length = 959
Score = 28.1 bits (61), Expect = 9.4
Identities = 29/104 (27%), Positives = 42/104 (39%)
Frame = +1
Query: 59 SEVSTSSSEHEGDEPVDEGQRDDGVVVTPRVTEKQTSESIDDMLEETVQHLREAGYSLEE 118
SE S E +EP E + + P Q+SES+ + E ++ E S+E
Sbjct: 178 SEAENPSKETLVNEPAKETVKLESDAEKPSEENNQSSESLKEEFVEAMEAPSEETQSIEP 357
Query: 119 IKDLAVLKDWNFENFAGYRLEEGIEEVECVAAVNECKELAVVNV 162
IK LK+ E EEG E +E K L V ++
Sbjct: 358 IK----LKEEPIE-----PSEEGKPSGESEKNASETKTLIVESI 462
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,563,492
Number of Sequences: 63676
Number of extensions: 258865
Number of successful extensions: 1133
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of query: 493
length of database: 12,639,632
effective HSP length: 101
effective length of query: 392
effective length of database: 6,208,356
effective search space: 2433675552
effective search space used: 2433675552
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0383.6