BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0383.11
(277 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC210077 153 9e-38
TC222440 similar to UP|Q6K9R7 (Q6K9R7) DNA ligase-like, partial ... 91 4e-19
BM270760 53 2e-07
AW348663 49 2e-06
TC212602 45 3e-05
TC230758 similar to UP|Q9FGZ0 (Q9FGZ0) Arabidopsis thaliana geno... 42 2e-04
BE347716 40 0.001
TC233834 similar to UP|Q9FGZ0 (Q9FGZ0) Arabidopsis thaliana geno... 36 0.022
TC208871 similar to UP|O22847 (O22847) Expressed protein (At2g43... 36 0.022
TC213786 similar to UP|Q756U1 (Q756U1) AER161Cp, partial (6%) 36 0.022
AI437737 32 0.31
TC220974 similar to UP|MP62_LYTPI (P91753) Mitotic apparatus pro... 31 0.70
TC211437 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%) 30 0.92
TC231640 homologue to UP|Q918P0 (Q918P0) Latency associated anti... 30 0.92
BF069947 weakly similar to GP|24459855|emb disease resistance-li... 30 0.92
TC226342 homologue to UP|NPM2_MOUSE (Q80W85) Nucleoplasmin 2, pa... 30 1.2
TC218169 similar to UP|Q84TF1 (Q84TF1) At4g28830, partial (94%) 30 1.2
BE556459 30 1.6
TC229531 similar to UP|Q9LV00 (Q9LV00) Emb|CAB85555.1, partial (... 29 2.0
TC231756 similar to UP|O60585 (O60585) Ser/Arg-related nuclear m... 29 2.0
>TC210077
Length = 581
Score = 153 bits (386), Expect = 9e-38
Identities = 74/86 (86%), Positives = 82/86 (95%)
Frame = +2
Query: 192 DPTPDFVVGSDVVYSENAVVDLVETLGQLSGPNTTIFLAGELRNDAILEYFLEAAMNDFT 251
+P PDFV+GSDVVYSE AVVDL+ETL QLSGPNTTIFLAGELRNDAILEYFLEAAM++FT
Sbjct: 5 EPKPDFVIGSDVVYSEGAVVDLLETLMQLSGPNTTIFLAGELRNDAILEYFLEAAMDNFT 184
Query: 252 IGRVDQTLWHPEYRSNRVVLYVLVKK 277
IGRV+QTLWHP+Y SNRVV+YVLVKK
Sbjct: 185 IGRVEQTLWHPDYCSNRVVIYVLVKK 262
>TC222440 similar to UP|Q6K9R7 (Q6K9R7) DNA ligase-like, partial (30%)
Length = 644
Score = 91.3 bits (225), Expect = 4e-19
Identities = 51/156 (32%), Positives = 86/156 (54%), Gaps = 8/156 (5%)
Frame = +3
Query: 56 LSKPNAFVSQSSLQLRLDSCGHSLSILQSPSSLGAPGVTGAVMWDSGVVLGKFLEHSVDL 115
L +P+ S ++ ++ L+ GH L P+S +WD+ +V KFLE +
Sbjct: 189 LMEPDRLNSPTTFEMPLEVMGHELQFSHDPNSKHL----XTTVWDASLVFAKFLERNCRK 356
Query: 116 GTLV---LQEKKIVELGSGCGLVGCIAALLGGEVILTDLLDRLRLLRKNIETNMKHVSLR 172
G L+ K+++ELG+GCG+ G ALLG +VI+TD + L LL++N+E N+ + +
Sbjct: 357 GRFSPAKLKGKRVIELGAGCGVSGIGMALLGCDVIVTDQKEVLPLLQRNVERNISRIMQK 536
Query: 173 -----GSATATELTWGEDPDRELIDPTPDFVVGSDV 203
GS EL WG++ + + P D+++G+DV
Sbjct: 537 NPDSFGSIKVAELQWGDESHIKAVGPPFDYIIGTDV 644
>BM270760
Length = 421
Score = 52.8 bits (125), Expect = 2e-07
Identities = 24/60 (40%), Positives = 37/60 (61%)
Frame = +3
Query: 173 GSATATELTWGEDPDRELIDPTPDFVVGSDVVYSENAVVDLVETLGQLSGPNTTIFLAGE 232
GS EL WG++ + + P D+++G+DVVY E+ + L++T+ LSGP TT L E
Sbjct: 240 GSIKVAELQWGDESHIKAVGPPFDYIIGTDVVYVEHLLEPLLQTILALSGPRTTTMLGYE 419
>AW348663
Length = 548
Score = 49.3 bits (116), Expect = 2e-06
Identities = 28/96 (29%), Positives = 42/96 (43%)
Frame = -2
Query: 182 WGEDPDRELIDPTPDFVVGSDVVYSENAVVDLVETLGQLSGPNTTIFLAGELRNDAILEY 241
W ++P DFV+ +DVVY +V LV + L + + L +LR E
Sbjct: 544 WNNPQQIAALNPPFDFVIATDVVYIPESVPSLVSAMETLVSDDGVVLLGYQLRAPEAHEL 365
Query: 242 FLEAAMNDFTIGRVDQTLWHPEYRSNRVVLYVLVKK 277
F E F + +V HP+Y +Y+L KK
Sbjct: 364 FWELCQQVFHVEKVPHEHLHPDYAYEETDVYLLKKK 257
>TC212602
Length = 452
Score = 45.4 bits (106), Expect = 3e-05
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +2
Query: 93 VTGAVMWDSGVVLGKFLEHSVDLGTLVLQEKKIVELGSGCGLVGCIAALLGGEVILTDLL 152
+TG ++W ++L ++L +V+L LQ +ELGSG G+ G + + +V++TD
Sbjct: 221 LTGQLVWPGAMLLNEYLSKNVNL----LQGCTAIELGSGVGITGILCSRFCHKVVMTDHN 388
Query: 153 DR-LRLLRKNIE 163
+ +++L+KNIE
Sbjct: 389 EEVIKILKKNIE 424
>TC230758 similar to UP|Q9FGZ0 (Q9FGZ0) Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone:K6M13, partial (46%)
Length = 678
Score = 42.4 bits (98), Expect = 2e-04
Identities = 37/114 (32%), Positives = 48/114 (41%), Gaps = 4/114 (3%)
Frame = +1
Query: 143 GGEVILTDLLDRLRLLRKNIETNMKHVSLRGSA-TATELTWGEDPDRELIDPTPDFVVGS 201
G V LTD + LR N + N V G T L WG D E I D V+ S
Sbjct: 1 GAHVTLTDFPHVVPNLRFNADANAAVVGPTGGVITVAPLRWGHAADVEAIGREFDLVLAS 180
Query: 202 DVVYSENAVVDLVETLG--QLSGPN-TTIFLAGELRNDAILEYFLEAAMNDFTI 252
DVVY ++ L+ETL LS N +F+ +R F + A F +
Sbjct: 181 DVVYHDHLYEPLLETLRLMMLSERNGKMVFVMAHMRRWKKESAFFKKARKHFNV 342
>BE347716
Length = 473
Score = 40.0 bits (92), Expect = 0.001
Identities = 35/109 (32%), Positives = 48/109 (43%), Gaps = 3/109 (2%)
Frame = +2
Query: 95 GAVMWDSGVVLGKFL---EHSVDLGTLVLQEKKIVELGSGCGLVGCIAALLGGEVILTDL 151
G +W VVL +++ +H T +VELG+G L G +AA LG V LTD
Sbjct: 209 GLFVWPCSVVLAEYIWQHKHRFSGAT-------VVELGAGTSLPGLVAAKLGARVTLTDD 367
Query: 152 LDRLRLLRKNIETNMKHVSLRGSATATELTWGEDPDRELIDPTPDFVVG 200
RL +L NM+ V LTWG D + P ++G
Sbjct: 368 STRLEVL-----DNMRRV--------LGLTWGV-WDSSIFSLQPTIILG 472
>TC233834 similar to UP|Q9FGZ0 (Q9FGZ0) Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone:K6M13, partial (18%)
Length = 432
Score = 35.8 bits (81), Expect = 0.022
Identities = 19/30 (63%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 123 KKIVELGSGCGLVG-CIAALLGGEVILTDL 151
++I+ELGSG GLVG AA LG V LTDL
Sbjct: 332 RRIIELGSGTGLVGIAAAATLGAHVTLTDL 421
>TC208871 similar to UP|O22847 (O22847) Expressed protein
(At2g43320/T1O24.6), partial (42%)
Length = 685
Score = 35.8 bits (81), Expect = 0.022
Identities = 17/49 (34%), Positives = 25/49 (50%)
Frame = +2
Query: 99 WDSGVVLGKFLEHSVDLGTLVLQEKKIVELGSGCGLVGCIAALLGGEVI 147
W S + L L+H + G L + K+++EL GL G A L G V+
Sbjct: 386 WTSSIDLVSVLKHEIRDGQLTFRGKRVLELSCNYGLPGIFACLKGASVV 532
>TC213786 similar to UP|Q756U1 (Q756U1) AER161Cp, partial (6%)
Length = 446
Score = 35.8 bits (81), Expect = 0.022
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 77 HSLSI-LQSPSSLGAPGVTGAVMWDSGVVLGKFLEHSVDLGTLVLQEKKIVELGSGCGLV 135
HS S+ +Q + P V G +W + ++L F+ H + L + ++LG+G GLV
Sbjct: 205 HSFSVRIQHNITSSIPNV-GLQVWRAELLLSDFILHKASSSSQ-LHQVIALQLGAGTGLV 378
Query: 136 GCIAALLGGEVILTD 150
G + A + V LTD
Sbjct: 379 GLLLARVANAVFLTD 423
>AI437737
Length = 282
Score = 32.0 bits (71), Expect = 0.31
Identities = 18/49 (36%), Positives = 25/49 (50%), Gaps = 7/49 (14%)
Frame = +1
Query: 95 GAVMWDSGVVLGKFLE-------HSVDLGTLVLQEKKIVELGSGCGLVG 136
G +W +VL KF E ++ L Q K+ VELG+GCG+ G
Sbjct: 136 GTTVWPCSLVLVKFAERWGPPSDNNPYARVLDFQGKRAVELGTGCGVAG 282
>TC220974 similar to UP|MP62_LYTPI (P91753) Mitotic apparatus protein p62,
partial (7%)
Length = 436
Score = 30.8 bits (68), Expect = 0.70
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 4/25 (16%)
Frame = +1
Query: 2 ENRQEEE----EEEEEEEDAPPPMV 22
E+ +EEE EEEEE+ED PPP V
Sbjct: 220 EDEEEEEAASSEEEEEDEDLPPPPV 294
>TC211437 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%)
Length = 857
Score = 30.4 bits (67), Expect = 0.92
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 2 ENRQEEEEEEEEEEDAPPPMVK 23
E+ +E+EEE+EEE PPP K
Sbjct: 568 EDEEEDEEEDEEETPQPPPTKK 633
Score = 28.1 bits (61), Expect = 4.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 2 ENRQEEEEEEEEEEDAPPP 20
+ EEE+EEE+EE+ P P
Sbjct: 562 DGEDEEEDEEEDEEETPQP 618
>TC231640 homologue to UP|Q918P0 (Q918P0) Latency associated antigen, partial
(7%)
Length = 466
Score = 30.4 bits (67), Expect = 0.92
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = +1
Query: 2 ENRQEEEEEEEEEEDAPPPMVKLGSYGGEVRLVVPGEESAAEETMLLWGIQQPTLSKPNA 61
E +EEEEEEEEEE+ + G V +++ ++ EE L + + + A
Sbjct: 52 EEEEEEEEEEEEEEEEEEEKEEEEEEEGNVLVIIDEDKHDTEE---LNKKCEDFIKRMKA 222
Query: 62 FVSQSSLQLR 71
S ++L+LR
Sbjct: 223 TFSSNNLELR 252
Score = 28.1 bits (61), Expect = 4.5
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +1
Query: 2 ENRQEEEEEEEEEED 16
E ++EEEEEEEEEE+
Sbjct: 34 EEKEEEEEEEEEEEE 78
Score = 27.3 bits (59), Expect = 7.8
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 2 ENRQEEEEEEEEEED 16
E +EEEEEEEEEE+
Sbjct: 43 EEEEEEEEEEEEEEE 87
Score = 27.3 bits (59), Expect = 7.8
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 2 ENRQEEEEEEEEEED 16
E +EEEEEEEEEE+
Sbjct: 49 EEEEEEEEEEEEEEE 93
Score = 27.3 bits (59), Expect = 7.8
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 2 ENRQEEEEEEEEEED 16
E +EEEEEEEEEE+
Sbjct: 46 EEEEEEEEEEEEEEE 90
Score = 27.3 bits (59), Expect = 7.8
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 2 ENRQEEEEEEEEEED 16
E +EEEEEEEEEE+
Sbjct: 37 EKEEEEEEEEEEEEE 81
>BF069947 weakly similar to GP|24459855|emb disease resistance-like protein
{Coffea arabica}, partial (30%)
Length = 426
Score = 30.4 bits (67), Expect = 0.92
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 2 ENRQEEEEEEEEEEDAPPPMVKLGSYGGEVRL 33
E +EEEE+EEEEE ++KLG G RL
Sbjct: 207 EEEEEEEEKEEEEEAWELFLLKLGHRGTPARL 302
>TC226342 homologue to UP|NPM2_MOUSE (Q80W85) Nucleoplasmin 2, partial (8%)
Length = 1326
Score = 30.0 bits (66), Expect = 1.2
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -3
Query: 2 ENRQEEEEEEEEEEDAPPPMV 22
++ +EEEEEEEEEED+ P +
Sbjct: 121 DDEEEEEEEEEEEEDSLTPPI 59
Score = 27.3 bits (59), Expect = 7.8
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = -3
Query: 1 MENRQEEEEEEEEEED 16
+E+ +EEEEEEEEEE+
Sbjct: 127 VEDDEEEEEEEEEEEE 80
>TC218169 similar to UP|Q84TF1 (Q84TF1) At4g28830, partial (94%)
Length = 891
Score = 30.0 bits (66), Expect = 1.2
Identities = 12/29 (41%), Positives = 18/29 (61%)
Frame = +2
Query: 120 LQEKKIVELGSGCGLVGCIAALLGGEVIL 148
+ +K + + G GCG +G AALL E +L
Sbjct: 173 VSDKVVADFGCGCGTLGVAAALLSAEHVL 259
>BE556459
Length = 250
Score = 29.6 bits (65), Expect = 1.6
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +2
Query: 170 SLRGSATATELTWGE-DPDRELIDPTP---DFVVGSDVVYSENAVVDLVETLGQL 220
S+ A +L WG D E++ P DF++G+D+ + ++++ L +++ QL
Sbjct: 26 SISHGLVAEKLEWGNTDQINEILQKHPGGFDFILGADICFQQSSIPMLFDSVKQL 190
>TC229531 similar to UP|Q9LV00 (Q9LV00) Emb|CAB85555.1, partial (33%)
Length = 1249
Score = 29.3 bits (64), Expect = 2.0
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Frame = -1
Query: 1 MENRQEEEEEEEEEEDAPP----PMVKLGSYGGEVRLVVPGEESAAEETML----LWGIQ 52
+E ++EEEEEEEEE++ + + G +V VV EET LW +
Sbjct: 292 VEEKKEEEEEEEEEKEVKR*VGLGLERKGEGKWKVGRVVGARRRGTEETQATGSNLWSVL 113
Query: 53 QPTL 56
P +
Sbjct: 112 PPLI 101
>TC231756 similar to UP|O60585 (O60585) Ser/Arg-related nuclear matrix
protein, partial (4%)
Length = 864
Score = 29.3 bits (64), Expect = 2.0
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = -2
Query: 2 ENRQEEEEEEEEEED 16
E R+EEEEEEEEEE+
Sbjct: 65 EEREEEEEEEEEEEE 21
Score = 28.9 bits (63), Expect = 2.7
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -2
Query: 2 ENRQEEEEEEEEEEDA 17
E +EEEEEEEEEE+A
Sbjct: 53 EEEEEEEEEEEEEEEA 6
Score = 27.3 bits (59), Expect = 7.8
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -2
Query: 2 ENRQEEEEEEEEEED 16
E +EEEEEEEEEE+
Sbjct: 56 EEEEEEEEEEEEEEE 12
Score = 27.3 bits (59), Expect = 7.8
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -2
Query: 2 ENRQEEEEEEEEEED 16
E +EEEEEEEEEE+
Sbjct: 62 EREEEEEEEEEEEEE 18
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.135 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,426,939
Number of Sequences: 63676
Number of extensions: 149009
Number of successful extensions: 2305
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1736
length of query: 277
length of database: 12,639,632
effective HSP length: 96
effective length of query: 181
effective length of database: 6,526,736
effective search space: 1181339216
effective search space used: 1181339216
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0383.11