TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0381.8
         (460 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC209482                                                              355  2e-98
TC222052                                                              223  2e-58
BG726231                                                              127  1e-29
BQ081362                                                               48  8e-06
TC223794                                                               32  0.59
TC209081 similar to UP|Q8LD35 (Q8LD35) Nuclear matrix protein 1,...    28  6.6
CD416660                                                               28  6.6
TC206769 similar to UP|Q93ZG9 (Q93ZG9) AT4g25340/T30C3_20, parti...    28  6.6
TC207603 UP|C773_SOYBN (O48928) Cytochrome P450 77A3  , complete       28  8.6
TC213832 similar to UP|AGA1_YEAST (P32323) A-agglutinin attachme...    28  8.6

>TC209482 
          Length = 921

 Score =  355 bits (912), Expect = 2e-98
 Identities = 173/210 (82%), Positives = 196/210 (92%)
 Frame = +1

Query: 249 YISYNFVIGAYSYWGPKAGYSIYHMSNPDLLFGGITIVCGILGTLGGGLILDRMTSTISN 308
           Y++YNFVIGAYSYWGPKAGYSIYHM+N DLLFGGITIVCGI+GTL GGL LDR++STISN
Sbjct: 1   YLAYNFVIGAYSYWGPKAGYSIYHMNNADLLFGGITIVCGIVGTLAGGLFLDRISSTISN 180

Query: 309 AFKLLSGATLLGAIFCLVAFLFKNLSGFIVFFSIGELLIFATQAPVNYVSLRCVKPSLRP 368
           AFKLLSGAT LGAIFCL+AFLFK+LSGFIVFFS+GELLIF TQAPVNYVSLRCVKPSLRP
Sbjct: 181 AFKLLSGATFLGAIFCLIAFLFKSLSGFIVFFSMGELLIFVTQAPVNYVSLRCVKPSLRP 360

Query: 369 LSMAISTVSIHIFGDVPSAPLVGVLQDRINDWRKSALCLTSVFFLAAGIWFIGIFLRTVD 428
           LSMAISTVSIH+FGDVPS+PLVGVLQD INDWRK+ALCLTS+FFLAA IWFIGIFL++ D
Sbjct: 361 LSMAISTVSIHVFGDVPSSPLVGVLQDHINDWRKTALCLTSIFFLAAVIWFIGIFLKS-D 537

Query: 429 LSTEDDEDQSATSLRGKMKPLLEGNSDASS 458
           +  +DDE+QSAT+  GK+ PLL+G+SD +S
Sbjct: 538 VYDKDDEEQSATTRGGKLTPLLDGSSDTTS 627


>TC222052 
          Length = 832

 Score =  223 bits (567), Expect = 2e-58
 Identities = 110/172 (63%), Positives = 135/172 (77%)
 Frame = +2

Query: 287 CGILGTLGGGLILDRMTSTISNAFKLLSGATLLGAIFCLVAFLFKNLSGFIVFFSIGELL 346
           CGILGT+ GG +LD MT+TISNAFKLLS AT +G   C  AFLFK+  GF+  F++GELL
Sbjct: 2   CGILGTVAGGFVLDFMTNTISNAFKLLSIATFIGGACCFGAFLFKSQYGFLALFAVGELL 181

Query: 347 IFATQAPVNYVSLRCVKPSLRPLSMAISTVSIHIFGDVPSAPLVGVLQDRINDWRKSALC 406
           +FATQ PVNYV L CVKPSLRPLSMA+STV+IHIFGDVPS+PLVG++QD+IN+WR +AL 
Sbjct: 182 VFATQGPVNYVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSSPLVGLMQDKINNWRTTALI 361

Query: 407 LTSVFFLAAGIWFIGIFLRTVDLSTEDDEDQSATSLRGKMKPLLEGNSDASS 458
           LT++FF AA IWFIGIFL +VD   ED E + ++  R    PLLE N+  +S
Sbjct: 362 LTTIFFPAAAIWFIGIFLPSVDRFNEDSEHEVSSVERTSTAPLLEENTAETS 517


>BG726231 
          Length = 415

 Score =  127 bits (319), Expect = 1e-29
 Identities = 63/119 (52%), Positives = 90/119 (74%), Gaps = 11/119 (9%)
 Frame = +1

Query: 180 GFAPLESKK--TISSIETNVSE----HGDDGVLA-----QDQAFIRGTRSTSKLRNQFTR 228
           GFAP +S+K  T+ ++ + VS+    +G D  L+     +D++    +RS   + +QF+R
Sbjct: 58  GFAPTDSEKALTLGTVASEVSDVGASNGKDEALSLKAEFRDKSSHEPSRSKCTILDQFSR 237

Query: 229 FSKDMQELLYDQVYIINVLGYISYNFVIGAYSYWGPKAGYSIYHMSNPDLLFGGITIVC 287
           F KDM+ELL D+V+++NVLGYI+YNFVIGAYSYWGPKAGYSIY+M+N D++FGGIT+VC
Sbjct: 238 FLKDMKELLLDKVFVVNVLGYIAYNFVIGAYSYWGPKAGYSIYNMTNADMMFGGITVVC 414


>BQ081362 
          Length = 421

 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 19/30 (63%), Positives = 26/30 (86%)
 Frame = +1

Query: 392 VLQDRINDWRKSALCLTSVFFLAAGIWFIG 421
           ++QD+IN+WR +AL LT++FF AA IWFIG
Sbjct: 76  IMQDKINNWRTTALILTTIFFPAAAIWFIG 165


>TC223794 
          Length = 457

 Score = 32.0 bits (71), Expect = 0.59
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +3

Query: 332 NLSGFIVFFSIGELLIFATQ 351
           ++ GF+  FSIGELL+FATQ
Sbjct: 3   SMYGFLALFSIGELLVFATQ 62


>TC209081 similar to UP|Q8LD35 (Q8LD35) Nuclear matrix protein 1, partial
           (65%)
          Length = 876

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 223 RNQFTRFSKDMQELLYDQVYIINVLGYISYN 253
           R QFT F K +  L  + VY ++VLGY+  N
Sbjct: 138 RKQFTFFRKYLSLLFCNGVYQLDVLGYLLVN 46


>CD416660 
          Length = 542

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 421 GIFLRTVDLSTEDDEDQSATSLRGKMKPLLEGNSDASS 458
           GIFL +VD   ED E Q +   R    PLL+  +  +S
Sbjct: 272 GIFLHSVDRFDEDSEHQVSNVERSNTMPLLQEKTGETS 159


>TC206769 similar to UP|Q93ZG9 (Q93ZG9) AT4g25340/T30C3_20, partial (10%)
          Length = 1057

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
 Frame = -1

Query: 134 VGVGEASFISLAAPFIDDNAPVAQKTAWLATFYMCIPAGTALGYVYGFAPLE--SKKTIS 191
           VG+G+ S  SL+   +   A +      L+  +          ++ G  P    S  TIS
Sbjct: 436 VGIGKPSSSSLSTRSVSPLATIGSPELLLSFSFN*ATCFFFFNFLVGSYPFSGLSSSTIS 257

Query: 192 SIETNVSEHGDDGVLAQDQAFIRGTRSTSKL 222
           SI T +   G+DG ++   + I+ +   S L
Sbjct: 256 SITTPLFGTGEDGYMSVSLSTIKSSAYPSSL 164


>TC207603 UP|C773_SOYBN (O48928) Cytochrome P450 77A3  , complete
          Length = 1929

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 37/127 (29%), Positives = 56/127 (43%), Gaps = 2/127 (1%)
 Frame = -1

Query: 19   LLLIFCVINTINYVDRGAIASNGVNGALPTCTDDSGVCTAGSGIQGDFNLNNFQ--DGVL 76
            +L I   I T+     G I     NG +   T  + V +A S  + + + +NF   +  L
Sbjct: 1539 ILAIMR*ICTVAIAKPGQILLPTPNGII--FTPVTPVMSASSPPEMNLSGSNFSGFNQFL 1366

Query: 77   SSAFMVGLLIASPIFASLAKSHSPFRLIGVGLSVWTFAVAGCGISFDFWSITICRMLVGV 136
             S+ M G+  ++  FAS+  S+ P  +  V   V T  V GC +   F   T CR   G+
Sbjct: 1365 GSSAMAGVYTST--FASIGMSYPPKVVGSVTACVSTKCVGGCFLRSSF--TTACR--YGI 1204

Query: 137  GEASFIS 143
               SF S
Sbjct: 1203 FSTSFSS 1183


>TC213832 similar to UP|AGA1_YEAST (P32323) A-agglutinin attachment subunit
           precursor, partial (4%)
          Length = 751

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
 Frame = -1

Query: 9   PNP-SWFTPKRLLLIFCVINTINYVDRGAIASNGVNGALPTCTDDSGVCTAGSGIQGD-- 65
           P+P S  +  RLL+ F   NT+N+ D+    ++    + PTC   S   T+ S       
Sbjct: 688 PSPLSSVSSLRLLV*FSCCNTMNHFDKTVFDASLSLSSTPTCFSSSMSSTSTSSSSSSSS 509

Query: 66  ----FNLNNFQDGVLSSAFMVGLLIASPIFASLAKSHS-PFRLIGVGLSVWTFAVAGCGI 120
                ++       L S  M+   + + I + L  S S   R     LSVW F+++    
Sbjct: 508 SSVAMSVPENDPKHLRSNLMLRKHVKNCIISFLKPSVSAQLRRFF*FLSVWIFSIS---- 341

Query: 121 SFDFWSITICRMLVGV 136
                SIT C++L  V
Sbjct: 340 -----SITDCQLLHAV 308


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.324    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,050,896
Number of Sequences: 63676
Number of extensions: 304851
Number of successful extensions: 1456
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1455
length of query: 460
length of database: 12,639,632
effective HSP length: 101
effective length of query: 359
effective length of database: 6,208,356
effective search space: 2228799804
effective search space used: 2228799804
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)