BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0378b.9
(768 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 414 e-115
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 410 e-114
CO982036 187 1e-47
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 149 6e-36
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 148 8e-36
BE211208 144 2e-34
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 141 1e-33
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 140 2e-33
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti... 137 2e-32
AI855899 similar to GP|2244960|emb| retrotransposon like protein... 135 5e-32
BU548243 134 2e-31
BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa ... 98 4e-31
CO982898 82 2e-29
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 126 3e-29
BF068614 similar to GP|27817858|db OJ1081_B12.7 {Oryza sativa (j... 79 4e-28
BM307983 119 5e-27
BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 96 9e-27
BU764568 102 2e-26
BF595216 72 2e-26
TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotr... 114 1e-25
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 414 bits (1063), Expect = e-115
Identities = 247/752 (32%), Positives = 394/752 (51%), Gaps = 6/752 (0%)
Frame = +1
Query: 2 FLTQCGIQHRLTCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLIN 61
F T GI H + QQNG VE K+R + E +L +P W +A TA Y+ N
Sbjct: 2500 FCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHN 2679
Query: 62 QLPIPTLDLSTPLQKLYD----KKPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLG 117
++ TL TP LY+ +KP FG CY K+ +S FLG
Sbjct: 2680 RV---TLRRGTPTT-LYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLG 2847
Query: 118 YSPMHKGYNCLTTEGKVIITRNVLFDETVFPFQFQTSKSSSDILLDSSLPTTSVIPLLPI 177
YS + Y VF + +T S ++++D P +
Sbjct: 2848 YSTNSRAYR-------------------VFNSRTRTVMESINVVVDDLSPARKKDVEEDV 2970
Query: 178 SNASPNVMPHANSVMPTVATNGSAPVVQTTVSDFSQPA*DSGVVHASAQPTEPPVPPSSN 237
+ NV A S N T S+ +QP S P E + +
Sbjct: 2971 RTSGDNVADAAKS-----GENAENSDSATDESNINQPDKRSSTRIQKMHPKELIIGDPNR 3135
Query: 238 VHSMTTRAKTGIHRPKAYAASTALSSV-PTSAK*ALSIPHWHQAMQEEYQALMNNNTWEL 296
+TTR++ + + S +S + P + K AL+ W AMQEE + N WEL
Sbjct: 3136 --GVTTRSR----EVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWEL 3297
Query: 297 VPLLHGRDAIGCKWVFRTKYNSDGSINKHKPRLVAKGFHQTEGYDYNETFSPVVKPTTIR 356
VP G + IG KW+F+ K N +G I ++K RLVA+G+ Q EG D++ETF+PV + +IR
Sbjct: 3298 VPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIR 3477
Query: 357 TVLSLALMHQWPIRQFDFNNAFLNGELVEEVFMQQPPGFSKGSS-HLVCKLKKALYGLKQ 415
+L +A + ++ + Q D +AFLNG L EEV+++QP GF+ + V +LKKALYGLKQ
Sbjct: 3478 LLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQ 3657
Query: 416 APRAWFDKLSSTLARFGFQAAKCDTSLFCKFTKSETLYILVYVDDIIITGSSSTAIFSLI 475
APRAW+++L+ L + G++ D +LF K + +YVDDI+ G S+ + +
Sbjct: 3658 APRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFV 3837
Query: 476 ADLNAVFPLKDLGSLHYFLGIEATHTKDGGLILSQTKYINDLLIKAKMDSINPSPTPMTS 535
+ + F + +G L YFLG++ +D + LSQ++Y +++ K M++ + TP +
Sbjct: 3838 QQMQSEFEMSLVGELTYFLGLQVKQMEDS-IFLSQSRYAKNIVKKFGMENASHKRTPAPT 4014
Query: 536 GLKLSANSGALFPKPLLYRSVVGALHYVTITRPEIAFPLNKVCQFMHSPLEPHWQAVKRI 595
LKLS + LYRS++G+L Y+T +RP+I + + ++ +P H VKRI
Sbjct: 4015 HLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRI 4194
Query: 596 LRYLHGTATHGLYLRRPSSMSITAFADSDWGSDPDDRRSTSGMCIYIGGNLVSWAAKKQT 655
L+Y++GT+ +G+ S+ + + D+DW DDR+STSG C Y+G NL+SW +KKQ
Sbjct: 4195 LKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQN 4374
Query: 656 VVARSSTEAEYRSLALVITEIMWLRSLLSELRVPTSPSSLIYCDNLSVVHLVANPILHTK 715
V+ S+ EAEY + ++++W++ +L E V +L YCDN+S +++ NP+ H++
Sbjct: 4375 CVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTL-YCDNMSAINISKNPVQHSR 4551
Query: 716 TKHFALDLHFVRERVADKQVTVVNIPAPSQVS 747
TKH + H++R+ V DK +T+ ++ Q++
Sbjct: 4552 TKHIDIRHHYIRDLVDDKVITLKHVDTEEQIA 4647
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 410 bits (1054), Expect = e-114
Identities = 246/752 (32%), Positives = 391/752 (51%), Gaps = 6/752 (0%)
Frame = +1
Query: 2 FLTQCGIQHRLTCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLIN 61
F T GI H + QQNG VE K+R + E +L +P W +A TA Y+ N
Sbjct: 2503 FCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHN 2682
Query: 62 QLPIPTLDLSTPLQKLYD----KKPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLG 117
++ TL TP LY+ +KP FG CY K+ +S FLG
Sbjct: 2683 RV---TLRRGTPTT-LYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLG 2850
Query: 118 YSPMHKGYNCLTTEGKVIITRNVLFDETVFPFQFQTSKSSSDILLDSSLPTTSVIPLLPI 177
YS + Y VF + +T S ++++D P +
Sbjct: 2851 YSTNSRAYR-------------------VFNSRTRTVMESINVVVDDLTPARKKDVEEDV 2973
Query: 178 SNASPNVMPHANSVMPTVATNGSAPVVQTTVSDFSQPA*DSGVVHASAQPTEPPVPPSSN 237
+ NV A S A N T + +QP + P E + +
Sbjct: 2974 RTSGDNVADTAKS-----AENAENSDSATDEPNINQPDKRPSIRIQKMHPKELIIGDPNR 3138
Query: 238 VHSMTTRAKTGIHRPKAYAASTALSSV-PTSAK*ALSIPHWHQAMQEEYQALMNNNTWEL 296
+TTR++ + + S +S + P + K AL+ W AMQEE + N WEL
Sbjct: 3139 --GVTTRSR----EIEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWEL 3300
Query: 297 VPLLHGRDAIGCKWVFRTKYNSDGSINKHKPRLVAKGFHQTEGYDYNETFSPVVKPTTIR 356
VP G + IG KW+F+ K N +G I ++K RLVA+G+ Q EG D++ETF+PV + +IR
Sbjct: 3301 VPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIR 3480
Query: 357 TVLSLALMHQWPIRQFDFNNAFLNGELVEEVFMQQPPGFSKGSS-HLVCKLKKALYGLKQ 415
+L +A + ++ + Q D +AFLNG L EE +++QP GF + V +LKKALYGLKQ
Sbjct: 3481 LLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQ 3660
Query: 416 APRAWFDKLSSTLARFGFQAAKCDTSLFCKFTKSETLYILVYVDDIIITGSSSTAIFSLI 475
APRAW+++L+ L + G++ D +LF K + +YVDDI+ G S+ + +
Sbjct: 3661 APRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFV 3840
Query: 476 ADLNAVFPLKDLGSLHYFLGIEATHTKDGGLILSQTKYINDLLIKAKMDSINPSPTPMTS 535
+ + F + +G L YFLG++ +D + LSQ+KY +++ K M++ + TP +
Sbjct: 3841 QQMQSEFEMSLVGELTYFLGLQVKQMEDS-IFLSQSKYAKNIVKKFGMENASHKRTPAPT 4017
Query: 536 GLKLSANSGALFPKPLLYRSVVGALHYVTITRPEIAFPLNKVCQFMHSPLEPHWQAVKRI 595
LKLS + LYRS++G+L Y+T +RP+I + + ++ +P H VKRI
Sbjct: 4018 HLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRI 4197
Query: 596 LRYLHGTATHGLYLRRPSSMSITAFADSDWGSDPDDRRSTSGMCIYIGGNLVSWAAKKQT 655
L+Y++GT+ +G+ S + + D+DW DDR+STSG C Y+G NL+SW +KKQ
Sbjct: 4198 LKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQN 4377
Query: 656 VVARSSTEAEYRSLALVITEIMWLRSLLSELRVPTSPSSLIYCDNLSVVHLVANPILHTK 715
V+ S+ EAEY + ++++W++ +L E V +L YCDN+S +++ NP+ H++
Sbjct: 4378 CVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTL-YCDNMSAINISKNPVQHSR 4554
Query: 716 TKHFALDLHFVRERVADKQVTVVNIPAPSQVS 747
TKH + H++R+ V DK +T+ ++ Q++
Sbjct: 4555 TKHIDIRHHYIRDLVDDKVITLEHVDTEEQIA 4650
>CO982036
Length = 674
Score = 187 bits (475), Expect = 1e-47
Identities = 104/209 (49%), Positives = 133/209 (62%), Gaps = 3/209 (1%)
Frame = -2
Query: 451 TLYILVYVDDIIITGSSSTAIFSLIADLNAVFPLKDLGSLHYFLGIEATHTKDGGLILSQ 510
T+Y+LVYVD IIITGSS T I +L + LN+ FPLK LG L YF+ IE D L+ S
Sbjct: 655 TVYLLVYVD-IIITGSSCTLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPD--LLFSL 485
Query: 511 TKYINDLLIKAKMDSINPSPTPMTSGLKLSANSGALFPKPLLYRSVVGALHYVTITRPEI 570
I ++ + P +PMT+ KLS + LF P YRSVVGAL Y T+ RPEI
Sbjct: 484 RTSIFEIFCRKPR*QAQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEI 305
Query: 571 AFPLNKVCQFMHSPLEPHWQAVKRILRYLHGTATHGLYLRRPSS---MSITAFADSDWGS 627
+F +NKVCQFM +PL+ HW VKRILRYL G+ ++GL L+ S + I F D+DW S
Sbjct: 304 SFAVNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWAS 125
Query: 628 DPDDRRSTSGMCIYIGGNLVSWAAKKQTV 656
DD+RSTSG +++G NL+SW KQ V
Sbjct: 124 AVDDKRSTSGAAVFLGPNLISWWXXKQQV 38
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 149 bits (375), Expect = 6e-36
Identities = 68/130 (52%), Positives = 93/130 (71%), Gaps = 1/130 (0%)
Frame = -2
Query: 297 VPLLHGRDAIGCKWVFRTKYNSDGSINKHKPRLVAKGFHQTEGYDYNETFSPVVKPTTIR 356
VPL G+ +GC+WV+ K G +++ K RLVAKG+ Q G DY +TFSPV K TT+R
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 357 TVLSLALMHQWPIRQFDFNNAFLNGELVEEVFMQQPPGF-SKGSSHLVCKLKKALYGLKQ 415
L++A + WP+ Q D NAFL+G+L E+++M+QPPGF ++G LVCKL ++LYGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 416 APRAWFDKLS 425
+PRAWF K S
Sbjct: 46 SPRAWFGKFS 17
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment),
partial (30%)
Length = 687
Score = 148 bits (374), Expect = 8e-36
Identities = 64/129 (49%), Positives = 90/129 (69%)
Frame = +2
Query: 617 ITAFADSDWGSDPDDRRSTSGMCIYIGGNLVSWAAKKQTVVARSSTEAEYRSLALVITEI 676
++ + D+DW P DRRSTSG C++IGGNLVSW +KKQTVVARSS EAEYRS+A+V E+
Sbjct: 17 LSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCEL 196
Query: 677 MWLRSLLSELRVPTSPSSLIYCDNLSVVHLVANPILHTKTKHFALDLHFVRERVADKQVT 736
MW++ L ELR +YCDN + +H+ +NP+ H +TKH +D HF+RE++ K++
Sbjct: 197 MWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEIV 376
Query: 737 VVNIPAPSQ 745
I + Q
Sbjct: 377 TEFIGSNDQ 403
>BE211208
Length = 413
Score = 144 bits (362), Expect = 2e-34
Identities = 75/129 (58%), Positives = 89/129 (68%)
Frame = +2
Query: 452 LYILVYVDDIIITGSSSTAIFSLIADLNAVFPLKDLGSLHYFLGIEATHTKDGGLILSQT 511
+Y+LVYVDDIIITG S+ I SL+ LN+ F LK LG L YFLGIE HT G ++L+Q+
Sbjct: 26 VYLLVYVDDIIITGRSNYLIQSLVHHLNSNFSLKQLGQLDYFLGIEVHHTPTGSVLLTQS 205
Query: 512 KYINDLLIKAKMDSINPSPTPMTSGLKLSANSGALFPKPLLYRSVVGALHYVTITRPEIA 571
KYI DLL K M P +PM + L+LS N L P +YRSVVGAL Y TITRPEI+
Sbjct: 206 KYICDLLHKTDMAEAKPISSPMVTNLRLSKNGDDLLSDPTMYRSVVGALQYPTITRPEIS 385
Query: 572 FPLNKVCQF 580
F NKVCQF
Sbjct: 386 FAANKVCQF 412
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 141 bits (355), Expect = 1e-33
Identities = 72/150 (48%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Frame = -3
Query: 280 AMQEEYQALMNNNTWELVPLLHGRDAIGCKWVFRTKYNSDGSINKHKPRLVAKGFHQTEG 339
AMQEE NN W+LV IG KWVFR K + G I ++K RLVAKG++Q EG
Sbjct: 458 AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279
Query: 340 YDYNETFSPVVKPTTIRTVLSLALMHQWPIRQFDFNNAFLNGELVEEVFMQQPPGFS-KG 398
DY ET++PV + IR +L+ + + + Q D +AFLNG + EEV+++QPPGF
Sbjct: 278 IDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPD 99
Query: 399 SSHLVCKLKKALYGLKQAPRAWFDKLSSTL 428
V KL+KALYGLKQAPRAW++++S+ L
Sbjct: 98 KPTHVYKLQKALYGLKQAPRAWYERISNFL 9
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 140 bits (354), Expect = 2e-33
Identities = 63/130 (48%), Positives = 90/130 (68%)
Frame = +3
Query: 263 SVPTSAK*ALSIPHWHQAMQEEYQALMNNNTWELVPLLHGRDAIGCKWVFRTKYNSDGSI 322
+VP++ + AL P W QAM +E QAL NN TWELVPL G+ +GC+WV+ K +G +
Sbjct: 15 TVPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGPNGKV 194
Query: 323 NKHKPRLVAKGFHQTEGYDYNETFSPVVKPTTIRTVLSLALMHQWPIRQFDFNNAFLNGE 382
++ K RLVAKG+ Q G +Y +TFSPV TT+R L++A + WP+ Q D NAFL+G+
Sbjct: 195 DRLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAFLHGD 374
Query: 383 LVEEVFMQQP 392
L E+++M+QP
Sbjct: 375 LEEDIYMEQP 404
>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
Length = 558
Score = 137 bits (345), Expect = 2e-32
Identities = 81/179 (45%), Positives = 110/179 (61%), Gaps = 2/179 (1%)
Frame = +1
Query: 320 GSINKHKPRLVAKGFHQTEGYDYNETFSPVVKPTTIRTVLSLALMHQWPIRQFDFNNAFL 379
G+I++ K RLVAK + Q G DY TFSPV K + + S+A++ WP+ D NAFL
Sbjct: 28 GTIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFL 207
Query: 380 NGELVEEVFMQQPPGF-SKG-SSHLVCKLKKALYGLKQAPRAWFDKLSSTLARFGFQAAK 437
+G L EEV+M+QP GF ++G SS++VC+L ++ YGLKQ+PRAW A + + +
Sbjct: 208 HGYLEEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAW--PFLYCGAAIWYDSHE 381
Query: 438 CDTSLFCKFTKSETLYILVYVDDIIITGSSSTAIFSLIADLNAVFPLKDLGSLHYFLGI 496
D S+F + +Y++VYVDDI ITGS I L L F KDLG L YFLGI
Sbjct: 382 ADHSVFYCHSPQGCIYLIVYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRYFLGI 558
>AI855899 similar to GP|2244960|emb| retrotransposon like protein
{Arabidopsis thaliana}, partial (18%)
Length = 418
Score = 135 bits (341), Expect = 5e-32
Identities = 69/131 (52%), Positives = 87/131 (65%), Gaps = 3/131 (2%)
Frame = +1
Query: 527 NPSPTPMTSGLKLSANSGALFPKPLLYRSVVGALHYVTITRPEIAFPLNKVCQFMHSPLE 586
N TPM S KLS L P YR +VGAL YVT+TRP IA+ +NKV +FM SPL+
Sbjct: 25 NGISTPMVSSYKLSKFGSELLPNAHQYRDIVGALQYVTLTRPNIAYNVNKVSEFMSSPLQ 204
Query: 587 PHWQAVKRILRYLHGTATHGLYLR---RPSSMSITAFADSDWGSDPDDRRSTSGMCIYIG 643
+ VKRILRYL GT T GL L+ + +S+ A+ D DWGSDP + RSTSG CI+ G
Sbjct: 205 SY*LTVKRILRYLSGTVTQGLLLQPAHMDAKISLRAYNDLDWGSDPAEMRSTSGSCIFSG 384
Query: 644 GNLVSWAAKKQ 654
NL++W++KKQ
Sbjct: 385 SNLIAWSSKKQ 417
>BU548243
Length = 599
Score = 134 bits (337), Expect = 2e-31
Identities = 69/151 (45%), Positives = 97/151 (63%), Gaps = 8/151 (5%)
Frame = -1
Query: 618 TAFADSDWGSDPDDRRSTSGMCIYIGGNLVSWAAKKQTVVARSSTEAEYRSLALVITEIM 677
TA D+ W SD DD RST G I++G NL+SW ++KQ V A+SSTEAEYRS+A E+
Sbjct: 599 TALCDAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELT 420
Query: 678 WLRSLLSELRVPTSPSSLIYCDNLSVVHLVANPILHTKTKHFALDLHFVRERVADKQVTV 737
W+++LL EL++P +P +I CDN S V + N + H++TKH +D+ FV E+V KQ+ +
Sbjct: 419 WIQALLMELQIPFTP-PVILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQI 243
Query: 738 VNIPAPSQ--------VSSTLFHCFKTKLRV 760
+IPA Q +SS F K+KL V
Sbjct: 242 FHIPALDQWAGILTKPLSSARFTFLKSKLTV 150
>BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa (japonica
cultivar-group)}, partial (18%)
Length = 430
Score = 97.8 bits (242), Expect(2) = 4e-31
Identities = 47/87 (54%), Positives = 60/87 (68%)
Frame = +1
Query: 265 PTSAK*ALSIPHWHQAMQEEYQALMNNNTWELVPLLHGRDAIGCKWVFRTKYNSDGSINK 324
P++ K AL P W QAMQ ++ ALM N T L L G+ AI CKWVFR K N G++N+
Sbjct: 34 PSTVKQALISPPWRQAMQADFDALMENKTLTLTSLPSGKAAIDCKWVFRIKENLYGTLNR 213
Query: 325 HKPRLVAKGFHQTEGYDYNETFSPVVK 351
++ RLVAKGFH G DY+ETFSPV++
Sbjct: 214 YRSRLVAKGFHLKFGCDYSETFSPVIE 294
Score = 56.2 bits (134), Expect(2) = 4e-31
Identities = 25/42 (59%), Positives = 32/42 (75%)
Frame = +3
Query: 354 TIRTVLSLALMHQWPIRQFDFNNAFLNGELVEEVFMQQPPGF 395
TIR +L +AL + WP++Q D NNAFL+G L EEV+M Q PGF
Sbjct: 300 TIRLILFIALTNHWPLQQVDINNAFLHGLLTEEVYMVQLPGF 425
>CO982898
Length = 816
Score = 82.4 bits (202), Expect(2) = 2e-29
Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Frame = -1
Query: 64 PIPTLDLSTPLQKLYDKKPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLGYSPMHK 123
P +++ + P +L+++ DYSF + FGC C+P RPYN K F+S C FLG HK
Sbjct: 597 PTVSINFAVPYTQLFNQMLDYSFPRVFGCACFPLIRPYNIQKFNFKSHECIFLGNYTSHK 418
Query: 124 GYNCLTTEGKVIITRNVLFDETVFPF-QFQTSKSSSDILLDSSLPTT 169
Y CL GK +++++V+F+E FP+ + SS+ I + +P T
Sbjct: 417 NYKCLAPAGK-LVSKDVIFNEI*FPYKELFLPDSSTCIPVPQPIPAT 280
Score = 66.2 bits (160), Expect(2) = 2e-29
Identities = 34/63 (53%), Positives = 42/63 (65%)
Frame = -3
Query: 2 FLTQCGIQHRLTCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLIN 61
FL GI H+L P+ QN VE K RHI + GL+LL+HA +PL FWG AF T +LIN
Sbjct: 781 FLND*GIIHKLIFPHTQYQNV-VERKQRHIVKFGLSLLSHASLPLKFWGHAFITPVFLIN 605
Query: 62 QLP 64
+LP
Sbjct: 604 RLP 596
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein,
partial (7%)
Length = 804
Score = 126 bits (317), Expect = 3e-29
Identities = 65/201 (32%), Positives = 111/201 (54%), Gaps = 3/201 (1%)
Frame = +1
Query: 553 YRSVVGALHYVTITRPEIAFPLNKVCQFMHSPLEPHWQAVKRILRYLHGTATHGL---YL 609
+R ++G+L Y+ +RP I F ++ + +FM P H QA KR+LR + GT G+ +
Sbjct: 22 FRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVLFPFK 201
Query: 610 RRPSSMSITAFADSDWGSDPDDRRSTSGMCIYIGGNLVSWAAKKQTVVARSSTEAEYRSL 669
+ + + DSDW DP+ +ST G V+ ++KKQ V+A S+ EAEY +
Sbjct: 202 AKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAEYVAA 381
Query: 670 ALVITEIMWLRSLLSELRVPTSPSSLIYCDNLSVVHLVANPILHTKTKHFALDLHFVRER 729
+L + +W+ +LL EL++ + DN S ++L +P LH ++KH L H++R++
Sbjct: 382 SLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHYIRDQ 561
Query: 730 VADKQVTVVNIPAPSQVSSTL 750
V+ VTV A Q++ +
Sbjct: 562 VSKGNVTVEYCKAEEQLADLM 624
>BF068614 similar to GP|27817858|db OJ1081_B12.7 {Oryza sativa (japonica
cultivar-group)}, partial (3%)
Length = 413
Score = 79.0 bits (193), Expect(2) = 4e-28
Identities = 39/70 (55%), Positives = 45/70 (63%)
Frame = +1
Query: 516 DLLIKAKMDSINPSPTPMTSGLKLSANSGALFPKPLLYRSVVGALHYVTITRPEIAFPLN 575
DLL K KM P +PM S KLS + LF P LY SVVGAL Y T+TRPE ++ +N
Sbjct: 202 DLLPKTKMAEAQPISSPMVSSCKLSKSGSDLFQDPTLYGSVVGALQYATLTRPEFSYSVN 381
Query: 576 KVCQFMHSPL 585
KVCQFM PL
Sbjct: 382 KVCQFMSQPL 411
Score = 65.1 bits (157), Expect(2) = 4e-28
Identities = 35/75 (46%), Positives = 46/75 (60%)
Frame = +2
Query: 439 DTSLFCKFTKSETLYILVYVDDIIITGSSSTAIFSLIADLNAVFPLKDLGSLHYFLGIEA 498
D SLF + T+++LVYVDDI ITG+ I LI+ LN+ F LK LG L YFLGIE
Sbjct: 2 DPSLFVYKQQQYTVFLLVYVDDITITGNCVLLIQQLISQLNSQFALKQLGLLDYFLGIEV 181
Query: 499 THTKDGGLILSQTKY 513
+ D G+ + K+
Sbjct: 182 KYLPDKGISCPRLKW 226
>BM307983
Length = 406
Score = 119 bits (298), Expect = 5e-27
Identities = 59/136 (43%), Positives = 89/136 (65%), Gaps = 4/136 (2%)
Frame = +2
Query: 306 IGCKWVFRTKYNSDGSINKHKPRLVAKGFHQTEGYDYNETFSPVVKPTTIRTVLS---LA 362
+GC+W++ KY +D +++++K RLVAKG+ QT G DY ETF+ K I++ S
Sbjct: 2 VGCRWIYTVKY*ADDTLDRYKARLVAKGYIQTYGIDYEETFAQWQK--*IQSGSSSP*QQ 175
Query: 363 LMHQWPIRQFDFNNAFLNGELVEEVFMQQPPGF-SKGSSHLVCKLKKALYGLKQAPRAWF 421
W + QFD NAFL+G L EEV+M+ PPG+ + + VC+LKKALYGLKQ+PRAWF
Sbjct: 176 AQFGWEMHQFDVKNAFLHGSLEEEVYMEIPPGYGASNGGNKVCRLKKALYGLKQSPRAWF 355
Query: 422 DKLSSTLARFGFQAAK 437
+ + + G++ ++
Sbjct: 356 GRFTQAMLSLGYKQSQ 403
>BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (20%)
Length = 406
Score = 95.5 bits (236), Expect(2) = 9e-27
Identities = 47/83 (56%), Positives = 61/83 (72%)
Frame = +3
Query: 620 FADSDWGSDPDDRRSTSGMCIYIGGNLVSWAAKKQTVVARSSTEAEYRSLALVITEIMWL 679
+ D+DW DRRSTSG C ++GGNLVS + KKQ+VVARSS EAE+R+LA I E +W+
Sbjct: 156 YTDADWAGSVTDRRSTSGYCTFVGGNLVS*S-KKQSVVARSSAEAEFRALAHGICETLWV 332
Query: 680 RSLLSELRVPTSPSSLIYCDNLS 702
+ LL EL+V +SP +YCDN S
Sbjct: 333 KKLLQELKVHSSPPIKLYCDNKS 401
Score = 43.9 bits (102), Expect(2) = 9e-27
Identities = 21/39 (53%), Positives = 26/39 (65%)
Frame = +1
Query: 570 IAFPLNKVCQFMHSPLEPHWQAVKRILRYLHGTATHGLY 608
IAF ++ V QFMH+P H +A RILRYL G+ GLY
Sbjct: 7 IAFAVSMVSQFMHAPGHEHLEAAFRILRYLKGSPGRGLY 123
>BU764568
Length = 420
Score = 102 bits (254), Expect(2) = 2e-26
Identities = 45/84 (53%), Positives = 62/84 (73%)
Frame = +3
Query: 635 TSGMCIYIGGNLVSWAAKKQTVVARSSTEAEYRSLALVITEIMWLRSLLSELRVPTSPSS 694
TSG C+ IGGNL+SW +KKQ+VVA+SS EAEYR++ALV E++WL+ LL EL+
Sbjct: 165 TSGYCVLIGGNLISWKSKKQSVVAKSSAEAEYRAMALVTCELIWLKQLL*ELKFEEDTQM 344
Query: 695 LIYCDNLSVVHLVANPILHTKTKH 718
+ CDN + +H+ +NPI H +TKH
Sbjct: 345 TLICDNQAALHIASNPIFH*RTKH 416
Score = 36.2 bits (82), Expect(2) = 2e-26
Identities = 18/54 (33%), Positives = 25/54 (45%)
Frame = +1
Query: 579 QFMHSPLEPHWQAVKRILRYLHGTATHGLYLRRPSSMSITAFADSDWGSDPDDR 632
QF++SP + HW AV IL+ GL I ++D+D P DR
Sbjct: 4 QFLNSPCQDHWNAVS*ILK*TKSAPGKGLIYEDKGHSQIIGYSDAD*VGSPSDR 165
>BF595216
Length = 421
Score = 71.6 bits (174), Expect(2) = 2e-26
Identities = 32/49 (65%), Positives = 37/49 (75%)
Frame = +3
Query: 363 LMHQWPIRQFDFNNAFLNGELVEEVFMQQPPGFSKGSSHLVCKLKKALY 411
L + WPI+Q D NNAFLNG L EEV+MQQPPGF + LVCKL KA+Y
Sbjct: 273 LTYHWPIQQLDVNNAFLNGILQEEVYMQQPPGFDSTTKSLVCKLHKAIY 419
Score = 66.6 bits (161), Expect(2) = 2e-26
Identities = 31/49 (63%), Positives = 40/49 (81%)
Frame = +1
Query: 315 KYNSDGSINKHKPRLVAKGFHQTEGYDYNETFSPVVKPTTIRTVLSLAL 363
K NSDG++NK+K +LVAKGFHQ G DY ETFS V+KP T+R +L+LA+
Sbjct: 124 KENSDGTVNKYKAKLVAKGFHQQYGTDYIETFSLVIKPITMRLLLTLAV 270
>TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotransposon
Hopscotch polyprotein, partial (7%)
Length = 1446
Score = 114 bits (286), Expect = 1e-25
Identities = 49/109 (44%), Positives = 73/109 (66%)
Frame = +2
Query: 622 DSDWGSDPDDRRSTSGMCIYIGGNLVSWAAKKQTVVARSSTEAEYRSLALVITEIMWLRS 681
D++W P DR ST G C+ IG NLV W + K VVARSS EAEY+++ + E++W++
Sbjct: 8 DANWAVSPIDRGSTLGYCVSIGENLVLWKSNK*NVVARSSAEAEYKAMTVATCELIWIKQ 187
Query: 682 LLSELRVPTSPSSLIYCDNLSVVHLVANPILHTKTKHFALDLHFVRERV 730
LL EL+ ++ + CDN + +H+ +NP+ H +TKH +D HFVRE+V
Sbjct: 188 LLQELKFGSTQQMKLCCDNQAALHIASNPVFHERTKHIEIDCHFVREKV 334
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,589,146
Number of Sequences: 63676
Number of extensions: 630864
Number of successful extensions: 3954
Number of sequences better than 10.0: 158
Number of HSP's better than 10.0 without gapping: 3829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3887
length of query: 768
length of database: 12,639,632
effective HSP length: 105
effective length of query: 663
effective length of database: 5,953,652
effective search space: 3947271276
effective search space used: 3947271276
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0378b.9