TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0378b.13
         (282 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC216850 homologue to UP|Q42793 (Q42793) Acetyl CoA carboxylase ...   212  1e-56
BI468880                                                               29  2.1
TC204742 similar to UP|Q6PVY8 (Q6PVY8) Zinc finger protein, part...    29  2.7
CD398807 similar to GP|11228986|gb| microtubule-binding protein ...    28  4.7

>TC216850 homologue to UP|Q42793 (Q42793) Acetyl CoA carboxylase  , complete
          Length = 7100

 Score =  212 bits (540), Expect(2) = 1e-56
 Identities = 144/272 (52%), Positives = 164/272 (59%), Gaps = 18/272 (6%)
 Frame = +1

Query: 4    LLQLDGNNHVIYLEEEAAGTCLLIDGRAFLLQNDHDP*KLCGFYLFLLWLWLVSKPLSFA 63
            L+QLDGN+HVIY EEEAAGT LLIDGR  LLQNDHDP KL       L  +LV+   S  
Sbjct: 1924 LMQLDGNSHVIYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPSKLLRYLVADD-SHV 2100

Query: 64   E*S*PYAEVEVIKMCMPLLSPASEIIQFKISEGQEMQACELIARLDLDDPSAVRKAEPF* 123
            +   PYAEVEV+KMCMPLLSPAS II F +SEGQ MQA ELIARLDLDDPSAVRKAEPF 
Sbjct: 2101 DADTPYAEVEVMKMCMPLLSPASGIIHFTMSEGQAMQAGELIARLDLDDPSAVRKAEPFT 2280

Query: 124  SWALLLQFLVKFNRNVPQA*ILHR*FLLAMSTNMMR*LC-------------KV*SIVYS 170
                +L      +  V Q          A S N  R +               + + + S
Sbjct: 2281 GSFPVLGPPTAISGKVHQK--------CAASLNAARMILAGYEHNIDEVVVQSLLNCLDS 2436

Query: 171  PEFPFLQW*ECFAVVATRLCKVLATHLPIDLKN*FPSRGFQAPKFLTF-AKLLKGNLEAH 229
            PE PFLQW EC AV+ATRL K L   L    K      G  + + + F AKLLKG +EAH
Sbjct: 2437 PELPFLQWQECLAVLATRLPKELKNELESKYKE---FEGISSSQIVDFPAKLLKGIIEAH 2607

Query: 230  ISSCPDKEKGAQERLK*P----D*SCEGGRET 257
            +SSCPDKEKGAQERL  P      S EGGRE+
Sbjct: 2608 LSSCPDKEKGAQERLVEPLLSLVKSYEGGRES 2703



 Score = 25.0 bits (53), Expect(2) = 1e-56
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 255  RETCTYNCSIPY*RVYV**RSI* 277
            RE C YNC IP  R+   *R I*
Sbjct: 2697 REPCPYNCPIPSGRISFC*RII* 2765


>BI468880 
          Length = 427

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 45  GFYLFLLWLWLVSKPLSFAE 64
           GF+LFLLW   V  P SF E
Sbjct: 272 GFFLFLLWFGFVMIPFSFGE 213


>TC204742 similar to UP|Q6PVY8 (Q6PVY8) Zinc finger protein, partial (78%)
          Length = 1466

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 15/42 (35%), Positives = 21/42 (49%)
 Frame = +1

Query: 4    LLQLDGNNHVIYLEEEAAGTCLLIDGRAFLLQNDHDP*KLCG 45
            L +  GN    ++EE A G C LI GR   +Q  +   + CG
Sbjct: 1171 LCRCSGNPSASFIEENACGNCHLIAGRPNHIQEKNGLSR*CG 1296


>CD398807 similar to GP|11228986|gb| microtubule-binding protein TANGLED1
           {Zea mays}, partial (4%)
          Length = 646

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 2   FHLLQLDGNNHVIYLEEEAAGTCLLIDGRAFLLQ 35
           F L + + NNHV  LE E   T L + G  FLL+
Sbjct: 408 FLLFKGEANNHVAILEGEEVRTHLFV*GEFFLLK 509


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.359    0.161    0.584 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,522,757
Number of Sequences: 63676
Number of extensions: 200833
Number of successful extensions: 2154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2151
length of query: 282
length of database: 12,639,632
effective HSP length: 96
effective length of query: 186
effective length of database: 6,526,736
effective search space: 1213972896
effective search space used: 1213972896
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 58 (26.9 bits)