TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0372b.7
         (224 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC215642 similar to UP|Q84MC1 (Q84MC1) At4g31290, partial (80%)       414  e-116
TC215643 similar to UP|Q84MC1 (Q84MC1) At4g31290, partial (80%)       404  e-113
TC209394 weakly similar to GB|AAB64690.1|603403|SCE8229 Yer163cp...   207  4e-54
BG359502 similar to GP|2827524|emb| predicted protein {Arabidops...    50  1e-14
TC226731                                                               31  0.51
TC224548 similar to UP|Q8H8S1 (Q8H8S1) Ribosomal protein L15, co...    29  1.5
TC232537 homologue to GB|AAH40943.1|26454860|BC040943 WAS protei...    28  3.3
TC228672                                                               27  5.7
TC227573 similar to UP|RRS1_ARATH (Q9SH88) Ribosome biogenesis r...    27  7.4
TC210251 similar to UP|Q9FME7 (Q9FME7) Kinesin-like protein, par...    27  9.7
BE800716                                                               27  9.7
TC207098 similar to UP|Q8L7Z6 (Q8L7Z6) AT3g54680/T5N23_40, parti...    27  9.7

>TC215642 similar to UP|Q84MC1 (Q84MC1) At4g31290, partial (80%)
          Length = 1146

 Score =  414 bits (1064), Expect = e-116
 Identities = 190/224 (84%), Positives = 207/224 (91%)
 Frame = +1

Query: 1   MVFWVFGYGSLVWNPGFEYDEKVIGYIKDYRRVFDLACIDHRGTPEHPARTCTLEEKEGE 60
           MVFWVFGYGSLVWNPGF+YDEK+IG+IKDYRRVFDLACIDHRGTPE+PARTCTLEEKEG 
Sbjct: 145 MVFWVFGYGSLVWNPGFDYDEKIIGFIKDYRRVFDLACIDHRGTPENPARTCTLEEKEGA 324

Query: 61  ICWGAVYCVRGGPEKEKLVMQYLERRECEYDHKTLVDFYKEGDSSHPALTGVIVFTSTPD 120
           ICWGA YCVRGGPEKEKL MQYLERRECEYD KTLV+F+KEGDS HP LT VIVFTSTPD
Sbjct: 325 ICWGAAYCVRGGPEKEKLAMQYLERRECEYDRKTLVNFFKEGDSLHPTLTDVIVFTSTPD 504

Query: 121 KVNNKYYLGPAPLDVMARQIATAHGPCGNNRDYLFLLEKAMHNIGHEDDMVIELAHEVRK 180
           KVNNKYYLGPAPL+ MARQIATA+GPCGNNRDY+FLLEKAMH+IGHEDD+VIELA+EV+K
Sbjct: 505 KVNNKYYLGPAPLEDMARQIATAYGPCGNNRDYIFLLEKAMHDIGHEDDLVIELANEVKK 684

Query: 181 VLGVGNVLPNDKKLSGPVQIQHSPHAPIPALQLLPMPEPIALDS 224
           VLGVGNV+P +KK  G  Q+ H PH PIP LQLLP+PEPIALDS
Sbjct: 685 VLGVGNVVPKEKKQVGAAQLPHPPHVPIPTLQLLPLPEPIALDS 816


>TC215643 similar to UP|Q84MC1 (Q84MC1) At4g31290, partial (80%)
          Length = 1100

 Score =  404 bits (1038), Expect = e-113
 Identities = 185/223 (82%), Positives = 205/223 (90%)
 Frame = +1

Query: 1   MVFWVFGYGSLVWNPGFEYDEKVIGYIKDYRRVFDLACIDHRGTPEHPARTCTLEEKEGE 60
           MVFWVFGYGSLVWNPGF+Y+EK+IG+IKDYRRVFDLACIDHRGTPE+PARTCTLEEKEG 
Sbjct: 145 MVFWVFGYGSLVWNPGFDYNEKIIGFIKDYRRVFDLACIDHRGTPENPARTCTLEEKEGA 324

Query: 61  ICWGAVYCVRGGPEKEKLVMQYLERRECEYDHKTLVDFYKEGDSSHPALTGVIVFTSTPD 120
           ICWGA YCVRGGPEKEKL MQYLERRECEYD KTLV+F+KEGDS HP LT VIVFTSTPD
Sbjct: 325 ICWGAAYCVRGGPEKEKLAMQYLERRECEYDRKTLVNFFKEGDSLHPTLTDVIVFTSTPD 504

Query: 121 KVNNKYYLGPAPLDVMARQIATAHGPCGNNRDYLFLLEKAMHNIGHEDDMVIELAHEVRK 180
           KVNNKYYLGPAPL+ MARQIATA+GPCGNNRDY+FLLEKAM++IGHEDD+VIELA+EVRK
Sbjct: 505 KVNNKYYLGPAPLEDMARQIATAYGPCGNNRDYIFLLEKAMYDIGHEDDLVIELANEVRK 684

Query: 181 VLGVGNVLPNDKKLSGPVQIQHSPHAPIPALQLLPMPEPIALD 223
           VLG+GNV+P +KKL G  Q+ H PH  IP LQL P+PEPIA+D
Sbjct: 685 VLGMGNVVPKEKKLVGAAQLPHPPHVTIPTLQLHPLPEPIAMD 813


>TC209394 weakly similar to GB|AAB64690.1|603403|SCE8229 Yer163cp
           {Saccharomyces cerevisiae;} , partial (24%)
          Length = 792

 Score =  207 bits (526), Expect = 4e-54
 Identities = 101/181 (55%), Positives = 130/181 (71%)
 Frame = +3

Query: 2   VFWVFGYGSLVWNPGFEYDEKVIGYIKDYRRVFDLACIDHRGTPEHPARTCTLEEKEGEI 61
           V WVFGYGSL+   GF YDE+++G+IK YRRVF     DHRGTPE P RT TLE  EGEI
Sbjct: 6   VMWVFGYGSLISKAGFHYDERIVGFIKGYRRVFYQGSTDHRGTPEFPGRTVTLEPAEGEI 185

Query: 62  CWGAVYCVRGGPEKEKLVMQYLERRECEYDHKTLVDFYKEGDSSHPALTGVIVFTSTPDK 121
           CWGA Y +    + E  ++ YLE RE +YD K  +DFY +  ++ PA++GV+V+ +TPDK
Sbjct: 186 CWGAAYKIAKKEDAETALV-YLEVREKQYDKKEYLDFYTDLTATSPAVSGVMVYIATPDK 362

Query: 122 VNNKYYLGPAPLDVMARQIATAHGPCGNNRDYLFLLEKAMHNIGHEDDMVIELAHEVRKV 181
            +N  YLGPA ++ +ARQI  A GP G NRDYLF LEKA+H IG +D  VI+LA+EVR++
Sbjct: 363 KSNVNYLGPASIEDIARQIIQAKGPAGPNRDYLFNLEKALHEIGCKDKHVIDLANEVRRI 542

Query: 182 L 182
           L
Sbjct: 543 L 545


>BG359502 similar to GP|2827524|emb| predicted protein {Arabidopsis
           thaliana}, partial (16%)
          Length = 313

 Score = 49.7 bits (117), Expect(2) = 1e-14
 Identities = 20/24 (83%), Positives = 24/24 (99%)
 Frame = +2

Query: 142 TAHGPCGNNRDYLFLLEKAMHNIG 165
           TA+GPCGNNRDY+FLLEKAM++IG
Sbjct: 53  TAYGPCGNNRDYIFLLEKAMYDIG 124



 Score = 46.6 bits (109), Expect(2) = 1e-14
 Identities = 21/24 (87%), Positives = 24/24 (99%)
 Frame = +3

Query: 165 GHEDDMVIELAHEVRKVLGVGNVL 188
           GHEDD+VIELA+EVRKVLGVGNV+
Sbjct: 240 GHEDDLVIELANEVRKVLGVGNVV 311


>TC226731 
          Length = 782

 Score = 30.8 bits (68), Expect = 0.51
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 196 GPVQIQHSPHAPIPALQLLPMPEPIAL 222
           GP+Q++H+P  P+P  + L  P+  +L
Sbjct: 118 GPIQMEHNPRGPVPVTRTLRAPKSYSL 38


>TC224548 similar to UP|Q8H8S1 (Q8H8S1) Ribosomal protein L15, complete
          Length = 820

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 16/60 (26%), Positives = 26/60 (42%)
 Frame = -2

Query: 116 TSTPDKVNNKYYLGPAPLDVMARQIATAHGPCGNNRDYLFLLEKAMHNIGHEDDMVIELA 175
           ++TP   N  Y++    L+  A  +  A  PC  N   L  +  A H +    D+ + LA
Sbjct: 285 SATPPNTNTVYHIALLSLEAQATSLVRAGRPCQANNGRLLPILPAPHPLQEAHDIRLLLA 106


>TC232537 homologue to GB|AAH40943.1|26454860|BC040943 WAS protein family,
           member 2 {Homo sapiens;} , partial (4%)
          Length = 496

 Score = 28.1 bits (61), Expect = 3.3
 Identities = 16/60 (26%), Positives = 27/60 (44%), Gaps = 2/60 (3%)
 Frame = +3

Query: 162 HNIGHEDDMVIELAHEVRKVLGVGNVLPNDKKLSGPVQIQHSPHAPIPALQ--LLPMPEP 219
           H +      ++   H  +  +   +++P  KK   P   QHSP +P+P  Q  L P  +P
Sbjct: 27  HILSSSSSTIVHFIHSEKAKIQ-RHMIPQWKKQHQPSSCQHSPLSPLPNSQI*LAPFSQP 203


>TC228672 
          Length = 552

 Score = 27.3 bits (59), Expect = 5.7
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 34  FDLACIDHRGTPEHPARTCTLEEKEGEICWGAVYCVRG 71
           F +   +HR T EH AR   L+   G +  GAV CV G
Sbjct: 145 FAITLREHRTTLEHAARLPLLKHDSGIVVMGAV-CVVG 255


>TC227573 similar to UP|RRS1_ARATH (Q9SH88) Ribosome biogenesis regulatory
           protein homolog, partial (24%)
          Length = 439

 Score = 26.9 bits (58), Expect = 7.4
 Identities = 13/44 (29%), Positives = 22/44 (49%)
 Frame = +2

Query: 176 HEVRKVLGVGNVLPNDKKLSGPVQIQHSPHAPIPALQLLPMPEP 219
           H V+ +     +LP+ + L GP+     P   +P  + LP P+P
Sbjct: 218 HLVQAIADALFILPSTEDLDGPLVTLPPPLTKLPREKHLPKPKP 349


>TC210251 similar to UP|Q9FME7 (Q9FME7) Kinesin-like protein, partial (4%)
          Length = 1071

 Score = 26.6 bits (57), Expect = 9.7
 Identities = 17/59 (28%), Positives = 25/59 (41%), Gaps = 5/59 (8%)
 Frame = -1

Query: 9   GSLVWNPGFEYDEKVIGYIKDYRRVFDLACIDHRGTPE-----HPARTCTLEEKEGEIC 62
           G L+W   F+Y + V                DH G  +     HP  T  LE++EG++C
Sbjct: 396 GHLIWPVYFQYQKVVF------------LAHDHCGPQQAPQSVHPEATQHLEQQEGDLC 256


>BE800716 
          Length = 419

 Score = 26.6 bits (57), Expect = 9.7
 Identities = 11/29 (37%), Positives = 19/29 (64%)
 Frame = +3

Query: 191 DKKLSGPVQIQHSPHAPIPALQLLPMPEP 219
           +++L+G   + HS HAP   L++LP  +P
Sbjct: 171 EEELNGTNVLFHSVHAPFVNLEMLPSIQP 257


>TC207098 similar to UP|Q8L7Z6 (Q8L7Z6) AT3g54680/T5N23_40, partial (8%)
          Length = 733

 Score = 26.6 bits (57), Expect = 9.7
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
 Frame = +2

Query: 42  RGTPEHPARTCTLEEKEGEICWGAVYCVRG-----------GPEKEKLVMQYLERRECEY 90
           RG P  PAR  T  ++E ++ W AV   +G           GP +E    Q++   E   
Sbjct: 86  RGGP--PARARTSAQREAQVRWRAVQDEKGWAGWRVGFGALGP-RESAQFQWMNGYE--- 247

Query: 91  DHKTLVDFYKEGDSSHPALTGVIVFTST 118
                V+F+ E +  H  L  +++ T++
Sbjct: 248 -----VEFFSEDEDKHILLQRLVLNTNS 316


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.320    0.141    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,679,795
Number of Sequences: 63676
Number of extensions: 172284
Number of successful extensions: 914
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of query: 224
length of database: 12,639,632
effective HSP length: 94
effective length of query: 130
effective length of database: 6,654,088
effective search space: 865031440
effective search space used: 865031440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)