BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0369c.6
(143 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203388 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete 230 2e-61
TC203266 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete 230 2e-61
TC203675 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete 229 3e-61
TC203315 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete 229 3e-61
TC203335 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete 229 3e-61
TC215108 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete 229 4e-61
TC203316 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial... 227 1e-60
TC215107 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete 227 1e-60
TC218706 similar to UP|Q9FFC0 (Q9FFC0) Histone H2B like protein,... 226 4e-60
TC218707 homologue to UP|O65819 (O65819) Histone H2B-3 (Fragment... 225 6e-60
TC207384 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, partial (94%) 223 2e-59
TC203659 homologue to UP|H2B_ARATH (P40283) Histone H2B, partial... 215 7e-57
TC207385 homologue to UP|Q9LFF6 (Q9LFF6) Histone H2B-like protei... 207 2e-54
AW164225 182 6e-47
TC203488 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial... 179 4e-46
AW705702 similar to GP|21554180|gb histone H2B-like protein {Ara... 169 5e-43
BE803400 101 1e-22
CD395557 96 6e-21
CD415775 GP|506629|gb|A photosystem II type I chlorophyll a/b-bi... 91 2e-19
CD405159 79 7e-16
>TC203388 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete
Length = 675
Score = 230 bits (586), Expect = 2e-61
Identities = 124/146 (84%), Positives = 132/146 (89%), Gaps = 5/146 (3%)
Frame = +2
Query: 3 KGDKKPAEKKPAAAEEKA----AAAEKKPRAEKKIPAKEGGAAGD-KKKKRSKKNVETYK 57
K +KKPAEKKPA ++ A AEKKP+A KK+P KEGGA G+ KKKKR+KK+VETYK
Sbjct: 92 KAEKKPAEKKPAEEKKSTVGDKAPAEKKPKAGKKLP-KEGGAGGEGKKKKRNKKSVETYK 268
Query: 58 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 117
IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV
Sbjct: 269 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 448
Query: 118 RLVLPGELAKHAVSEGTKAVTKFTSS 143
RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 449 RLVLPGELAKHAVSEGTKAVTKFTSS 526
>TC203266 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete
Length = 752
Score = 230 bits (586), Expect = 2e-61
Identities = 124/146 (84%), Positives = 132/146 (89%), Gaps = 5/146 (3%)
Frame = +1
Query: 3 KGDKKPAEKKPAAAEEKA----AAAEKKPRAEKKIPAKEGGAAGD-KKKKRSKKNVETYK 57
K +KKPAEKKPA ++ A AEKKP+A KK+P KEGGA G+ KKKKR+KK+VETYK
Sbjct: 127 KAEKKPAEKKPAEEKKSTVGDKAPAEKKPKAGKKLP-KEGGAGGEGKKKKRNKKSVETYK 303
Query: 58 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 117
IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV
Sbjct: 304 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 483
Query: 118 RLVLPGELAKHAVSEGTKAVTKFTSS 143
RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 484 RLVLPGELAKHAVSEGTKAVTKFTSS 561
>TC203675 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete
Length = 744
Score = 229 bits (585), Expect = 3e-61
Identities = 124/147 (84%), Positives = 132/147 (89%), Gaps = 6/147 (4%)
Frame = +3
Query: 3 KGDKKPAEKKPAAAEEKA----AAAEKKPRAEKKIPAKEGGAAGD--KKKKRSKKNVETY 56
K +KKPAEKKPA ++ A AEKKP+A KK+P KEGGA G+ KKKKR+KK+VETY
Sbjct: 39 KAEKKPAEKKPAEEKKSTVGDKAPAEKKPKAGKKLP-KEGGAGGEGGKKKKRNKKSVETY 215
Query: 57 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTA 116
KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTA
Sbjct: 216 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTA 395
Query: 117 VRLVLPGELAKHAVSEGTKAVTKFTSS 143
VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 396 VRLVLPGELAKHAVSEGTKAVTKFTSS 476
>TC203315 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete
Length = 778
Score = 229 bits (585), Expect = 3e-61
Identities = 124/142 (87%), Positives = 133/142 (93%)
Frame = +3
Query: 2 AKGDKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYIF 61
AK +KKPAEKKPAA + A AEKKP+AEKKI +KEGG+ +KKKKR+KK+VETYKIYIF
Sbjct: 96 AKAEKKPAEKKPAAEK---APAEKKPKAEKKI-SKEGGS--EKKKKRTKKSVETYKIYIF 257
Query: 62 KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 121
KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVL
Sbjct: 258 KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVL 437
Query: 122 PGELAKHAVSEGTKAVTKFTSS 143
PGELAKHAVSEGTKAVTKFTSS
Sbjct: 438 PGELAKHAVSEGTKAVTKFTSS 503
>TC203335 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete
Length = 710
Score = 229 bits (585), Expect = 3e-61
Identities = 124/147 (84%), Positives = 132/147 (89%), Gaps = 6/147 (4%)
Frame = +3
Query: 3 KGDKKPAEKKPAAAEEKA----AAAEKKPRAEKKIPAKEGGAAGD--KKKKRSKKNVETY 56
K +KKPAEKKPA ++ A AEKKP+A KK+P KEGGA G+ KKKKR+KK+VETY
Sbjct: 84 KAEKKPAEKKPAEEKKSTVGDKAPAEKKPKAGKKLP-KEGGAGGEGGKKKKRNKKSVETY 260
Query: 57 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTA 116
KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTA
Sbjct: 261 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTA 440
Query: 117 VRLVLPGELAKHAVSEGTKAVTKFTSS 143
VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 441 VRLVLPGELAKHAVSEGTKAVTKFTSS 521
>TC215108 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete
Length = 712
Score = 229 bits (583), Expect = 4e-61
Identities = 124/142 (87%), Positives = 132/142 (92%)
Frame = +3
Query: 2 AKGDKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYIF 61
AK +KKPAEKKPA + A AEKKP+AEKKI +KEGG+ +KKKKR+KK+VETYKIYIF
Sbjct: 93 AKAEKKPAEKKPA----EKAPAEKKPKAEKKI-SKEGGS--EKKKKRTKKSVETYKIYIF 251
Query: 62 KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 121
KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL
Sbjct: 252 KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 431
Query: 122 PGELAKHAVSEGTKAVTKFTSS 143
PGELAKHAVSEGTKAVTKFTSS
Sbjct: 432 PGELAKHAVSEGTKAVTKFTSS 497
>TC203316 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (97%)
Length = 734
Score = 227 bits (579), Expect = 1e-60
Identities = 122/142 (85%), Positives = 131/142 (91%), Gaps = 1/142 (0%)
Frame = +3
Query: 3 KGDKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGD-KKKKRSKKNVETYKIYIF 61
K +KKPAE+K + +KA A EKKP+A KK+P KEGGA G+ KKKKR+KK+VETYKIYIF
Sbjct: 87 KAEKKPAEEKKSTVGDKAPA-EKKPKAGKKLP-KEGGAGGEGKKKKRNKKSVETYKIYIF 260
Query: 62 KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 121
KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL
Sbjct: 261 KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 440
Query: 122 PGELAKHAVSEGTKAVTKFTSS 143
PGELAKHAVSEGTKAVTKFTSS
Sbjct: 441 PGELAKHAVSEGTKAVTKFTSS 506
>TC215107 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete
Length = 667
Score = 227 bits (579), Expect = 1e-60
Identities = 123/141 (87%), Positives = 131/141 (92%)
Frame = +3
Query: 3 KGDKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYIFK 62
K +KKPAEKKPA + A AEKKP+AEKKI +KEGG+ +KKKKR+KK+VETYKIYIFK
Sbjct: 102 KAEKKPAEKKPA----EKAPAEKKPKAEKKI-SKEGGS--EKKKKRTKKSVETYKIYIFK 260
Query: 63 VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 122
VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP
Sbjct: 261 VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 440
Query: 123 GELAKHAVSEGTKAVTKFTSS 143
GELAKHAVSEGTKAVTKFTSS
Sbjct: 441 GELAKHAVSEGTKAVTKFTSS 503
>TC218706 similar to UP|Q9FFC0 (Q9FFC0) Histone H2B like protein, partial
(94%)
Length = 583
Score = 226 bits (575), Expect = 4e-60
Identities = 124/143 (86%), Positives = 130/143 (90%)
Frame = +1
Query: 1 MAKGDKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYI 60
MAKG+KKPAEKKPA EKA A +K +AEKKIP KE + KKKKR+KK+VETYKIYI
Sbjct: 58 MAKGEKKPAEKKPA---EKAPA--EKTKAEKKIP-KEPASGEKKKKKRNKKSVETYKIYI 219
Query: 61 FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLV 120
FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLV
Sbjct: 220 FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLV 399
Query: 121 LPGELAKHAVSEGTKAVTKFTSS 143
LPGELAKHAVSEGTKAVTKFTSS
Sbjct: 400 LPGELAKHAVSEGTKAVTKFTSS 468
>TC218707 homologue to UP|O65819 (O65819) Histone H2B-3 (Fragment), partial
(97%)
Length = 509
Score = 225 bits (573), Expect = 6e-60
Identities = 122/143 (85%), Positives = 131/143 (91%)
Frame = +1
Query: 1 MAKGDKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYI 60
MAKG+KKPAEKKPAA EKA A +K +AEKKIP + A+G+KKKKR+KK+VETYKIYI
Sbjct: 58 MAKGEKKPAEKKPAA--EKAPA--EKTKAEKKIP--KDAASGEKKKKRTKKSVETYKIYI 219
Query: 61 FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLV 120
FKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLV
Sbjct: 220 FKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLV 399
Query: 121 LPGELAKHAVSEGTKAVTKFTSS 143
LPGEL KH VSEGTKAVTKFTSS
Sbjct: 400 LPGELPKHPVSEGTKAVTKFTSS 468
>TC207384 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, partial (94%)
Length = 592
Score = 223 bits (568), Expect = 2e-59
Identities = 118/137 (86%), Positives = 127/137 (92%)
Frame = +3
Query: 7 KPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYIFKVLKQ 66
K AEKKPAA + A AEKKP+AEKK+P + G+ G+KKKKRSKK+VETYKIYIFKVLKQ
Sbjct: 66 KAAEKKPAAEK---APAEKKPKAEKKVPKE--GSGGEKKKKRSKKSVETYKIYIFKVLKQ 230
Query: 67 VHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELA 126
VHPDIGISSKAMGIMNSFINDIFEKLAQE++RLARYNKKPTITSREIQTAVRLVLPGELA
Sbjct: 231 VHPDIGISSKAMGIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTAVRLVLPGELA 410
Query: 127 KHAVSEGTKAVTKFTSS 143
KHAVSEGTKAVTKFTSS
Sbjct: 411 KHAVSEGTKAVTKFTSS 461
>TC203659 homologue to UP|H2B_ARATH (P40283) Histone H2B, partial (82%)
Length = 752
Score = 215 bits (547), Expect = 7e-57
Identities = 114/124 (91%), Positives = 119/124 (95%), Gaps = 1/124 (0%)
Frame = +3
Query: 21 AAAEKKPRAEKKIPAKEGGAAGD-KKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMG 79
A AEKKP+A KK+P KEGGA G+ KKKKR+KK+VETYKIYIFKVLKQVHPDIGISSKAMG
Sbjct: 54 APAEKKPKAGKKLP-KEGGAGGEGKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMG 230
Query: 80 IMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 139
IMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct: 231 IMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 410
Query: 140 FTSS 143
FTSS
Sbjct: 411 FTSS 422
>TC207385 homologue to UP|Q9LFF6 (Q9LFF6) Histone H2B-like protein, partial
(83%)
Length = 512
Score = 207 bits (526), Expect = 2e-54
Identities = 109/117 (93%), Positives = 114/117 (97%)
Frame = +3
Query: 27 PRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN 86
P+AEKKIP KEGG G+KKKKRSKK+VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN
Sbjct: 3 PKAEKKIP-KEGG--GEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN 173
Query: 87 DIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
DIFEKLAQE++RLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 174 DIFEKLAQEAARLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 344
>AW164225
Length = 388
Score = 182 bits (461), Expect = 6e-47
Identities = 101/134 (75%), Positives = 112/134 (83%)
Frame = +2
Query: 10 EKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYIFKVLKQVHP 69
EKKP ++ KKP+AE K+ +KEG + G+ KKK SKK+VETYKIYIFKVLKQVHP
Sbjct: 2 EKKPETEKDTEG---KKPKAENKV-SKEG-SGGENKKKMSKKSVETYKIYIFKVLKQVHP 166
Query: 70 DIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 129
I ISSKAMGIMNSFIN IF+KLAQE+ RLARYNKK TITS EIQTAV+LVLPGELAKH
Sbjct: 167 YIRISSKAMGIMNSFINYIFKKLAQEAPRLARYNKKRTITSTEIQTAVKLVLPGELAKHP 346
Query: 130 VSEGTKAVTKFTSS 143
VSEGTKAVTKFTSS
Sbjct: 347 VSEGTKAVTKFTSS 388
>TC203488 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (63%)
Length = 541
Score = 179 bits (454), Expect = 4e-46
Identities = 92/93 (98%), Positives = 93/93 (99%)
Frame = +2
Query: 51 KNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITS 110
K+VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITS
Sbjct: 38 KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITS 217
Query: 111 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 218 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 316
>AW705702 similar to GP|21554180|gb histone H2B-like protein {Arabidopsis
thaliana}, partial (80%)
Length = 370
Score = 169 bits (427), Expect = 5e-43
Identities = 86/123 (69%), Positives = 106/123 (85%), Gaps = 2/123 (1%)
Frame = +2
Query: 23 AEKKPRAEKKIPAKEGGAAGD--KKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGI 80
AEKKP+A+KK+P KEG A G+ KKKK++KK+VETYKIYI KVLKQVHP+I ISSKAMGI
Sbjct: 5 AEKKPKAKKKLP-KEGRAGGERGKKKKKNKKSVETYKIYICKVLKQVHPNINISSKAMGI 181
Query: 81 MNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKF 140
+NSFIN+IFE L QES RLA YNK PTITS+EIQT ++L+LPG+L KH +S+ T+ +TK+
Sbjct: 182 INSFINNIFEXLTQESCRLAHYNKXPTITSKEIQTTIKLMLPGKLTKHXMSKDTETITKW 361
Query: 141 TSS 143
TSS
Sbjct: 362 TSS 370
>BE803400
Length = 355
Score = 101 bits (251), Expect = 1e-22
Identities = 57/96 (59%), Positives = 69/96 (71%)
Frame = +2
Query: 48 RSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPT 107
R++K+V TYKIYIF V QV P + I +AM IM SF+++IF+KLAQESSRLARY+ K +
Sbjct: 68 RTEKSVPTYKIYIFNV*NQVLPYMSIFGQAMVIMISFVSNIFKKLAQESSRLARYHMKLS 247
Query: 108 ITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
ITS EI A RLVLPG LA HA S G V F+ S
Sbjct: 248 ITSMEIHAAARLVLPG*LAMHAASGGALVVAIFSIS 355
>CD395557
Length = 680
Score = 95.9 bits (237), Expect = 6e-21
Identities = 57/98 (58%), Positives = 67/98 (68%), Gaps = 7/98 (7%)
Frame = -3
Query: 53 VETYKIYIFKVLKQVHPD----IGISSKAMG---IMNSFINDIFEKLAQESSRLARYNKK 105
V T+K++I V+ VH + + S G +S I + + +RLARYNKK
Sbjct: 576 VHTWKLHIGGVISNVHESGIHHLVVHSVLCGSTKTTSSCIKIVASCRIRHEARLARYNKK 397
Query: 106 PTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
PTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 396 PTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 283
>CD415775 GP|506629|gb|A photosystem II type I chlorophyll a/b-binding
protein {Glycine max}, partial (34%)
Length = 625
Score = 90.9 bits (224), Expect = 2e-19
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = -3
Query: 98 RLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
RLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 329 RLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 192
>CD405159
Length = 694
Score = 79.0 bits (193), Expect = 7e-16
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 104 KKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
KKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 397 KKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.308 0.125 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,996,933
Number of Sequences: 63676
Number of extensions: 39463
Number of successful extensions: 735
Number of sequences better than 10.0: 190
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of query: 143
length of database: 12,639,632
effective HSP length: 88
effective length of query: 55
effective length of database: 7,036,144
effective search space: 386987920
effective search space used: 386987920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0369c.6