BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0368b.6
(480 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG404993 62 6e-10
TC206238 weakly similar to UP|Q7PX96 (Q7PX96) AgCP12237 (Fragmen... 60 2e-09
CO986021 57 2e-08
TC233956 56 3e-08
TC231922 56 3e-08
TC213061 55 9e-08
BE610670 50 2e-06
TC233392 50 3e-06
TC231841 50 3e-06
TC219600 weakly similar to UP|Q9SGD7 (Q9SGD7) T23G18.9, partial ... 49 4e-06
BU765000 49 4e-06
CF921567 47 1e-05
BQ453949 47 1e-05
TC221865 46 4e-05
CA851073 45 9e-05
BI427114 44 2e-04
BI785148 homologue to GP|25166165|dbj murF {Wigglesworthia brevi... 44 2e-04
BE660043 43 4e-04
BI973267 42 5e-04
CO979823 41 0.001
>BG404993
Length = 412
Score = 62.0 bits (149), Expect = 6e-10
Identities = 35/96 (36%), Positives = 49/96 (50%), Gaps = 2/96 (2%)
Frame = -3
Query: 129 WGRTTSGINSTASAYELLTENIEDTGPDPMWCLLWRWKGAPCVKMFLWKVLNNGL--MVN 186
W SG ST +AYELL E I D ++ LW+ K P +F W+++N+ L VN
Sbjct: 320 WKADPSGNYSTKTAYELLQEAIRGDNEDGIFVQLWKLKIPPKAPVFTWRLINDRLPTKVN 141
Query: 187 VKRVHNHLADSDLCPLCGTLSESVIHALRDCPMVKP 222
++R ++DS LCPLC E H +C P
Sbjct: 140 LRRRQVEISDS-LCPLCNNSEEDAAHLFFNCNKTLP 36
>TC206238 weakly similar to UP|Q7PX96 (Q7PX96) AgCP12237 (Fragment), partial
(9%)
Length = 1259
Score = 60.1 bits (144), Expect = 2e-09
Identities = 36/116 (31%), Positives = 50/116 (43%)
Frame = +3
Query: 158 MWCLLWRWKGAPCVKMFLWKVLNNGLMVNVKRVHNHLADSDLCPLCGTLSESVIHALRDC 217
++C L RW G + L + L N R + H + CP C L E+ +HALRDC
Sbjct: 99 LFCRLSRWVGPERIINLLGNAADGALFTNPLRRYRHTSMDSSCPRCPELEETCLHALRDC 278
Query: 218 PMVKPVRLANLPTGGESHFFSMELQAWLLRNMRDGLQGWDRDAWTKRFAINVWCLW 273
P V + LP FF+ ++ WL N+ + W F I V LW
Sbjct: 279 PKVAAFWRSVLPKKLAPKFFNGDVAVWLETNLSFSEAAF---FWPTFFGIAVELLW 437
>CO986021
Length = 900
Score = 57.0 bits (136), Expect = 2e-08
Identities = 33/114 (28%), Positives = 52/114 (44%), Gaps = 1/114 (0%)
Frame = -1
Query: 107 IVFQEIMESLPRHLSSAPGLPVWGRTTSGINSTASAYELLTENIEDTGPDPMWCLLWRWK 166
I F + + ++ H + +W +GI ST SAY LL N + +LW+ K
Sbjct: 834 IAFMDDISAISIHQQLQDSM-LWKADPTGIYSTKSAYRLLLPNNRPGQHSSNFKILWKLK 658
Query: 167 GAPCVKMFLWKVLNNGLMVNVKRVHNHLADSD-LCPLCGTLSESVIHALRDCPM 219
P ++F W++ + L + + H+A D +CPLCG E H C M
Sbjct: 657 IPPRAELFSWRLFRDRLSIRANLLRRHVALQDIMCPLCGNHQEEAGHLFFHCRM 496
>TC233956
Length = 757
Score = 56.2 bits (134), Expect = 3e-08
Identities = 29/97 (29%), Positives = 48/97 (48%), Gaps = 1/97 (1%)
Frame = +2
Query: 128 VWGRTTSGINSTASAYELLTENIEDTGPDPMWCLLWRWKGAPCVKMFLWKVLNNGLMVNV 187
VW ++GI ST SAY+++ ++D G + LW K P F+W++L + L
Sbjct: 68 VWRAESTGIISTKSAYQVIKSELDDEGQHLGFKKLWEIKVPPKALSFVWRLLWDRLPTKD 247
Query: 188 KRVHNHL-ADSDLCPLCGTLSESVIHALRDCPMVKPV 223
+ + + DLCP C + SE+ H C + P+
Sbjct: 248 NLIKRQIQVEDDLCPFCHSQSETASHLFFTCGKIMPL 358
>TC231922
Length = 803
Score = 56.2 bits (134), Expect = 3e-08
Identities = 55/216 (25%), Positives = 81/216 (37%), Gaps = 25/216 (11%)
Frame = -3
Query: 46 WQIGDGKVVRF*QDRWLASGILLAE-------------VAVQPIPPGSLNRVVDEFLGSN 92
W++G G ++F QD WL+ G L + + + + S N EF
Sbjct: 705 WRVGCGDKIKFWQDSWLSEGCNLQQKYNQLYTISRQ*NLTISKMGKFSQNARSWEFKWRR 526
Query: 93 GT--WETAGFVELMPNIVFQEIMESLPRHLSSAPGLPVWGRTTSGINSTASAYELLTENI 150
+E A V+ M I I + A W +SG+ ST SAY LL +I
Sbjct: 525 RLFDYEYAMAVDFMNEISGISIQ-------NQAHDSMFWKADSSGVYSTKSAYRLLMPSI 367
Query: 151 EDTGPDPMWCLLWRWKGAPCVKMFLWKVLNNGLMVNVKRVHNHLADSD-LCPLCGTLSES 209
++ +LW K P +F W++ + L + D +CPLCG E
Sbjct: 366 SPAPSRRIFQILWHLKIPPRAAVFSWRLFLDRLPTRGNLSRRSIPIQDIMCPLCGCQHEE 187
Query: 210 VIHALRDCPMVKPV---------RLANLPTGGESHF 236
H C M K + + LP SHF
Sbjct: 186 AGHLFFHCKMTKGLWWESMRWIRVIGALPADPASHF 79
>TC213061
Length = 823
Score = 54.7 bits (130), Expect = 9e-08
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 2/149 (1%)
Frame = +2
Query: 128 VWGRTTSGINSTASAYELLTENIEDTGPDPMWCLLWRWKGAPCVKMFLWKVLNNGLMV-- 185
VW +SG SAY ++ E I + D + LW+ K V MF W++L + L
Sbjct: 137 VWAAESSGSYLARSAYRVIREGIPEEEQDREFKELWKLKVPMKVTMFAWRLLKDILPTRD 316
Query: 186 NVKRVHNHLADSDLCPLCGTLSESVIHALRDCPMVKPVRLANLPTGGESHFFSMELQAWL 245
N++R L + +CPLC ++ ES H C + P+ +L F +
Sbjct: 317 NLRRKRVELHEY-VCPLCRSMDESASHLFFHCSKILPIWWESLSWVKLVGAFPHHPRHHF 493
Query: 246 LRNMRDGLQGWDRDAWTKRFAINVWCLWR 274
++ + QG + W + W +W+
Sbjct: 494 HQHSHEVYQGLQGNRWKWWWLALTWTIWK 580
>BE610670
Length = 368
Score = 50.1 bits (118), Expect = 2e-06
Identities = 36/111 (32%), Positives = 49/111 (43%), Gaps = 2/111 (1%)
Frame = -2
Query: 109 FQEIMESLPRHLSSAPGLPVWGRTTSGINSTASAYELLTENIEDTGPDPMWCLLWRWKGA 168
F + ++ + HLSS L +W SG ST SAY LL D ++W K
Sbjct: 358 FMDDIDDVQIHLSSLDSL-IWRADPSGAYSTKSAYNLLKGEGSFDNEDSASKIIWNLKIP 182
Query: 169 PCVKMFLWKVLNNGL--MVNVKRVHNHLADSDLCPLCGTLSESVIHALRDC 217
P F W++ N L N++R L S CPLC E+V H + C
Sbjct: 181 PRTIAFSWRIFKNRLPTKANLRRRQVEL-PSYRCPLCDLEEENVGHIMFSC 32
>TC233392
Length = 1145
Score = 49.7 bits (117), Expect = 3e-06
Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 15/168 (8%)
Frame = -1
Query: 71 VAVQPIPPGSLNRVVDEFL--GSNGTWETAGFVEL-----------MPNIVFQEIMESLP 117
V P P + N+V +++ G + E A VEL N + S
Sbjct: 857 VGKNPSPTSAKNKVKLKYISEGQPSSLELAFGVELGLNSHS*YSKKYHNAINVSTQNSHA 678
Query: 118 RHLSSAPGLPVWGRTTSGINSTASAYELLTENIEDTGPDPMWCLLWRWKGAPCVKMFLWK 177
+ P VW + + ST SAY+LL ++E D LW+ K +F W+
Sbjct: 677 QIQQQVPDTWVWKHEPNELYSTRSAYKLLQGHLEGEDQDGALQDLWKLKIPAKASIFAWR 498
Query: 178 VLNNGLMV--NVKRVHNHLADSDLCPLCGTLSESVIHALRDCPMVKPV 223
++ + L N+ R L DS LCP C E H +C ++P+
Sbjct: 497 LIRDRLPTKSNLHRRQVVLEDS-LCPFCRIREEDASHIFLECNKIRPL 357
>TC231841
Length = 791
Score = 49.7 bits (117), Expect = 3e-06
Identities = 42/200 (21%), Positives = 81/200 (40%), Gaps = 3/200 (1%)
Frame = +3
Query: 128 VWGRTTSGINSTASAYELLTENIEDTGPDPMWCLLWRWKGAPCVKMFLWKVLNNGLMV-- 185
VW SG + SAY +L + + D ++ LW+ K + +F W+++ + L
Sbjct: 72 VWKADPSGQYTAKSAYGVLWGEMFEEQQDGVFEELWKLKLPSKITIFAWRLIRDRLPTRS 251
Query: 186 NVKRVHNHLADSDLCPLCGTLSESVIHALRDCPMVKPVRLANLPTGGESHFFSMELQAWL 245
N++R + D CP C + ES H C + PV +L F +
Sbjct: 252 NLRRKQIEV-DDPRCPFCRSAEESAAHLFFHCSRIAPVWWESLSWVNLLGVFPNHPRQHF 428
Query: 246 LRNMRDGLQGWDRDAWTKRFAINVWCLWRMM*YSIMCSGIVLRYNAG-LCRASMMMVWLP 304
L+++ G W + W +W+ I +G +NA + ++ ++W
Sbjct: 429 LQHIYGVTAGMRASRWKWWWLALTWTIWKQRNNMIFSNG---TFNANKILDEAIFLIW-- 593
Query: 305 LMLSQVLRVRKALAGYFMQW 324
+ + + K + ++ QW
Sbjct: 594 ---TWLTHLEKDFSIHYNQW 644
>TC219600 weakly similar to UP|Q9SGD7 (Q9SGD7) T23G18.9, partial (21%)
Length = 785
Score = 49.3 bits (116), Expect = 4e-06
Identities = 20/53 (37%), Positives = 30/53 (55%)
Frame = +3
Query: 165 WKGAPCVKMFLWKVLNNGLMVNVKRVHNHLADSDLCPLCGTLSESVIHALRDC 217
W+G +++F W V GL N +R H LA D+C +C +E+ +H LR C
Sbjct: 12 WEGPEKIRLFYWTVAKGGLKTNNRRHHYSLA*DDMCIMCSGAAETYLHLLRAC 170
>BU765000
Length = 425
Score = 49.3 bits (116), Expect = 4e-06
Identities = 29/83 (34%), Positives = 42/83 (49%), Gaps = 2/83 (2%)
Frame = +2
Query: 143 YELLTENIEDTGPDPMWCLLWRWKGAPCVKMFLWKVLNNGLMV--NVKRVHNHLADSDLC 200
Y +L E+I + D + LW+ K P V +F W++L + L N++R L + LC
Sbjct: 2 YSVLREDISEEAQDGEFKELWKLKVPPKVAVFAWRLLKDRLPTRDNLRRKQVELHEY-LC 178
Query: 201 PLCGTLSESVIHALRDCPMVKPV 223
P C T+ ES H C V PV
Sbjct: 179 PFCRTMEESACHLFFHCRKVLPV 247
>CF921567
Length = 686
Score = 47.4 bits (111), Expect = 1e-05
Identities = 37/122 (30%), Positives = 55/122 (44%), Gaps = 11/122 (9%)
Frame = -1
Query: 134 SGINSTASAYELLTENIEDTGPDPMWCLLWRWKGAPCVKMFLWKVLNNGLMV--NVKRVH 191
+G+ ST SAY++L E D + ++W K P F W++ N L N+KR
Sbjct: 677 NGLYSTKSAYKVL*EGHASAIEDRVLNIMWSLKIPPRASAFSWRLFKNRLPTRENLKRRQ 498
Query: 192 NHLADSDLCPLCGTLSESVIHALRDCPMVK-----PVRLAN----LPTGGESHFFSMELQ 242
L + CPLC ESV H +C + P+R N PT ++HF ++
Sbjct: 497 VSL-HTYSCPLCDLEEESVNHLFFNCSKTRSLWWEPLRWVNRVGPFPTDPKNHF--LQFS 327
Query: 243 AW 244
W
Sbjct: 326 QW 321
>BQ453949
Length = 450
Score = 47.4 bits (111), Expect = 1e-05
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Frame = +3
Query: 122 SAPGLPVWGRTTSGINSTASAYELLTENIEDTGPDPMWCLLWRWKGAPCVKMFLWKVLNN 181
S+ L +WG + G ST SAY L T D + +W K P F ++ N
Sbjct: 21 SSRDLLLWGSNSDGSYSTKSAYNFLKNEDSQTIEDSAFKNIWNLKLPPRACAFS*RIF*N 200
Query: 182 GL--MVNVKRVHNHLADSDLCPLCGTLSESVIHALRDC 217
+ VN++R H L S+ CPLC E+V H + C
Sbjct: 201 RIPTKVNLRRRHVKLPSSN-CPLCDEEEETVGHVMYSC 311
>TC221865
Length = 1045
Score = 45.8 bits (107), Expect = 4e-05
Identities = 58/243 (23%), Positives = 94/243 (37%), Gaps = 16/243 (6%)
Frame = -3
Query: 44 IRWQIGDGKVVRF*QDRWLASGILLAEVAVQPIPPGSLNRVVDEFLGSNG--TWE----- 96
I W++G G RF +D+ + G L + + + + +GS+ TWE
Sbjct: 935 IVWKVGCGDKFRFWEDKLVGEGETLMRKYPRMYQISCQQQQLIQQVGSHTETTWEWKFQW 756
Query: 97 --TAGFVELMPNIVFQEIMESLP--RHLSSAPGLPVWGRTTSGINSTASAYELLTENIED 152
E+ I F E + P RHL+ VW +G ST SAY L+
Sbjct: 755 RRPLFDNEVDTTIGFLEDISRFPIHRHLTDCW---VWKSEPNGHYSTRSAYHLMQHEAAK 585
Query: 153 TGPDPMWCLLWRWKGAPCVKMFLWKVLNNGLMV--NVKRVHNHLADSDLCPLCGTLSESV 210
DP + +W+ K +F +++ + L N++R L + LC C E
Sbjct: 584 ANTDPAFEEIWKLKIPAKAAIFA*RLVKDRLPTKNNLRRRQVQL-NGTLCLFCRNYEEEA 408
Query: 211 IHALRDCPMVKPVRLANLPTGGESHFFSMELQAWLLRNMRD--GLQGWDR-DAWTKRFAI 267
H C +PV +L S FS + L++ GL+ ++R W
Sbjct: 407 SHLFFSCTKTQPVWWESLSWINTSGAFSANPRHHFLQHSFGLLGLKQYNR*KCWWVALTF 228
Query: 268 NVW 270
+W
Sbjct: 227 TIW 219
>CA851073
Length = 633
Score = 44.7 bits (104), Expect = 9e-05
Identities = 24/95 (25%), Positives = 42/95 (43%), Gaps = 1/95 (1%)
Frame = +1
Query: 128 VWGRTTSGINSTASAYELLTENIEDTGPDPMWCLLWRWKGAPCVKMFLWKVLNNGLMVNV 187
VW G+ ST SAY +L ++ +W+ K P +F W+++ + L
Sbjct: 37 VWKADPCGVYSTKSAYRILMTCNRHVSEANIFKTIWKLKIPPRAAVFSWRLIKDRLPTRH 216
Query: 188 KRVHNHLA-DSDLCPLCGTLSESVIHALRDCPMVK 221
+ +++ + CPLCG E H +C M +
Sbjct: 217 NLLRRNVSIQENECPLCGYEQEEADHLFFNCKMTR 321
>BI427114
Length = 425
Score = 43.5 bits (101), Expect = 2e-04
Identities = 25/74 (33%), Positives = 34/74 (45%)
Frame = +3
Query: 200 CPLCGTLSESVIHALRDCPMVKPVRLANLPTGGESHFFSMELQAWLLRNMRDGLQGWDRD 259
C C L E+ +HALRDCP V + +P FF+ ++ WL RN+ +
Sbjct: 15 CARCDFLEETCLHALRDCPKVAEFWRSVIPKKLAPKFFNGDVTVWLERNLSFSEAAF--- 185
Query: 260 AWTKRFAINVWCLW 273
W F I V LW
Sbjct: 186 FWPTFFGIAVELLW 227
>BI785148 homologue to GP|25166165|dbj murF {Wigglesworthia brevipalpis},
partial (2%)
Length = 422
Score = 43.5 bits (101), Expect = 2e-04
Identities = 25/82 (30%), Positives = 38/82 (45%)
Frame = -2
Query: 171 VKMFLWKVLNNGLMVNVKRVHNHLADSDLCPLCGTLSESVIHALRDCPMVKPVRLANLPT 230
+++ W +L+N L N R H +L +S P C E +H LRD P K + L
Sbjct: 409 IRIMFWLILHNSLSKNSTRFHRNLVNSSAFPHCSNPREDSLHCLRDFPHAKEIWLG---F 239
Query: 231 GGESHFFSMELQAWLLRNMRDG 252
G H S+ L L++ +G
Sbjct: 238 GFAPHLSSLPLM*SGLKSQLNG 173
>BE660043
Length = 714
Score = 42.7 bits (99), Expect = 4e-04
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Frame = -2
Query: 128 VWGRTTSGINSTASAYELLTENIEDTGPDPMWCLLWRWKGAPCVKMFLWKVLNNGLMV-- 185
VW ++G S+ +AY LL N E+ D ++ LW+ K +F +++ + L
Sbjct: 617 VWKPESNGYYSSRNAYILLQGNSEEGNMDDIFKDLWKLKIPAKASIFAGRLIRDRLPTKS 438
Query: 186 NVKRVHNHLADSDLCPLCGTLSESVIHALRDC 217
N+++ + DS LCP C E+ H DC
Sbjct: 437 NMRKRQIDINDS-LCPFCSIKEETASHLFFDC 345
>BI973267
Length = 406
Score = 42.4 bits (98), Expect = 5e-04
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Frame = +1
Query: 129 WGRTTSGINSTASAYELLTENIEDTGPDPMWCLLWRWKGAPCVKMFLWKVLNNGLMVNVK 188
W +G +T S Y++L ++D G + L K P F W++L + L
Sbjct: 73 WRAEANGEFTTKSTYQVLQSELDDQGQYEGFQQLCNIKIPPKALSFAWRLL*DRLPTKDN 252
Query: 189 RVHNHL-ADSDLCPLCGTLSESVIHALRDCPMVKPV 223
V + ++DLCP C E+ H C + P+
Sbjct: 253 LVKRQIQVENDLCPFCHNQPETASHLFFKCDKIMPM 360
>CO979823
Length = 853
Score = 41.2 bits (95), Expect = 0.001
Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 2/149 (1%)
Frame = -2
Query: 128 VWGRTTSGINSTASAYELLTENIEDTGPDPMWCLLWRWKGAPCVKMFLWKVLNNGLMV-- 185
+W G ST S Y +L + + D + +W+ K +F W+++ + L
Sbjct: 693 LWKPEPGGHYSTKSGYHVLWGELTEEIQDADFAEIWKLKIPTKAAVFAWRLVRDRLPTKS 514
Query: 186 NVKRVHNHLADSDLCPLCGTLSESVIHALRDCPMVKPVRLANLPTGGESHFFSMELQAWL 245
N++R + D +CPLC + E H +C P+ ++ +
Sbjct: 513 NLRRRQVMVQDM-VCPLCNNIEEGAAHLFFNCTKTLPLWWESMSWVNLKTAMPQTPRQHF 337
Query: 246 LRNMRDGLQGWDRDAWTKRFAINVWCLWR 274
L+ D G W + W +W+
Sbjct: 336 LQYGTDIADGLKSKRWKCWWIALTWTIWQ 250
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.334 0.143 0.505
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,534,525
Number of Sequences: 63676
Number of extensions: 451504
Number of successful extensions: 3859
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 3770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3839
length of query: 480
length of database: 12,639,632
effective HSP length: 101
effective length of query: 379
effective length of database: 6,208,356
effective search space: 2352966924
effective search space used: 2352966924
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0368b.6