BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0360.9
(107 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC228001 122 3e-29
TC228002 107 7e-25
AW704344 33 0.028
TC233952 27 1.2
TC220855 similar to GB|AAQ56831.1|34098897|BT010388 At3g03960 {A... 27 1.5
TC228989 similar to UP|Q9LSS5 (Q9LSS5) Myosin heavy chain-like, ... 26 2.6
TC231098 similar to UP|SR40_YEAST (P32583) Suppressor protein SR... 26 3.4
TC206981 similar to UP|Q9LQB4 (Q9LQB4) F4N2.3, partial (25%) 25 4.4
TC220727 24 9.8
>TC228001
Length = 843
Score = 122 bits (306), Expect = 3e-29
Identities = 79/106 (74%), Positives = 83/106 (77%), Gaps = 1/106 (0%)
Frame = +1
Query: 1 ELSELKKTLNVEVEQLRTEFQDLRTTLHQQQEDVTASLRNLGLQDVSADGKKAESQA*EA 60
ELSELKKTLNVEV+QLR EFQDLRTTL QQQEDVTASLRNLGLQD S D K A SQ E
Sbjct: 415 ELSELKKTLNVEVDQLRAEFQDLRTTLQQQQEDVTASLRNLGLQDAS-DVKHAPSQ--ET 585
Query: 61 KIEEID*KEQQVLPEEDN-SKDAEN*TGFSLEYLLLLAV*PLEKLN 105
KIE+I +EQ V+PEEDN SK AE * F EY LLLAV LEKLN
Sbjct: 586 KIEKIVKEEQVVVPEEDNSSKVAET*IAF*FEY-LLLAVYTLEKLN 720
>TC228002
Length = 805
Score = 107 bits (268), Expect = 7e-25
Identities = 75/110 (68%), Positives = 81/110 (73%), Gaps = 5/110 (4%)
Frame = +1
Query: 1 ELSELKKTLNVEVEQLRTEFQDLRTTLHQQQEDVTASLRNLGLQDVSADGKKAESQA*EA 60
ELSELKKTLNVEV+QLR EFQDLRTTL QQQEDVTASLRNLGLQDVS D K A SQ E
Sbjct: 364 ELSELKKTLNVEVDQLRAEFQDLRTTLQQQQEDVTASLRNLGLQDVS-DVKHAPSQ--ET 534
Query: 61 KIEEID*KEQQVLP-----EEDNSKDAEN*TGFSLEYLLLLAV*PLEKLN 105
KIEEI +EQ V+P ++ N K F+LEY LLLAV LEKLN
Sbjct: 535 KIEEIVKEEQVVVP*RR**QQSN*KLNGL---FNLEY-LLLAVYTLEKLN 672
>AW704344
Length = 217
Score = 32.7 bits (73), Expect = 0.028
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2
Query: 1 ELSELKKTLNVEVEQLRTEFQD 22
ELSELKKTLN + +QLR E QD
Sbjct: 152 ELSELKKTLNGDRDQLRAESQD 217
>TC233952
Length = 466
Score = 27.3 bits (59), Expect = 1.2
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +3
Query: 1 ELSELK---KTLNVEVEQLRTEFQDLRTTLHQQQEDVTASLRNL 41
+LSE K + N +E+LRTE +D T Q EDV+ + +
Sbjct: 297 KLSEAKYQFEEKNAFLEKLRTELEDFMRTKDGQNEDVSPESKKI 428
>TC220855 similar to GB|AAQ56831.1|34098897|BT010388 At3g03960 {Arabidopsis
thaliana;} , partial (28%)
Length = 575
Score = 26.9 bits (58), Expect = 1.5
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 12 EVEQLRTEFQDLRTTLHQQQEDVTASLRNLGLQDVSADGKKAESQA*EAKIEEID 66
EVE F+ R + +D+ +L+ G+Q + +G K S EA ++ ID
Sbjct: 23 EVEARTCHFKGFRVRVFSNCKDMGFNLQPYGIQSMLKEGHKHLSGLDEAVLKNID 187
>TC228989 similar to UP|Q9LSS5 (Q9LSS5) Myosin heavy chain-like, partial
(23%)
Length = 884
Score = 26.2 bits (56), Expect = 2.6
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
Frame = +1
Query: 8 TLNVEVEQLRTEFQDLRTTLHQQQEDVTASLRN---LGLQDVSADGKK-----AESQA*E 59
+L EVEQLR+ + T ++Q +RN L Q S GK+ AE + +
Sbjct: 55 SLKSEVEQLRSAIETAETKYQEEQIRSMVQIRNAYELVEQIKSESGKRECELEAELKKKK 234
Query: 60 AKIEEI-------D*KEQQVLPEEDN 78
A IEE+ + + Q ++ E DN
Sbjct: 235 ADIEELKANLMDKETELQGIVEENDN 312
>TC231098 similar to UP|SR40_YEAST (P32583) Suppressor protein SRP40, partial
(5%)
Length = 1016
Score = 25.8 bits (55), Expect = 3.4
Identities = 15/43 (34%), Positives = 23/43 (52%)
Frame = +2
Query: 12 EVEQLRTEFQDLRTTLHQQQEDVTASLRNLGLQDVSADGKKAE 54
EVE R FQD +LH+Q+E + + L Q++S + E
Sbjct: 530 EVEMARV-FQDPTKSLHEQREWIKIQMLQLQEQNISYQAQALE 655
>TC206981 similar to UP|Q9LQB4 (Q9LQB4) F4N2.3, partial (25%)
Length = 1981
Score = 25.4 bits (54), Expect = 4.4
Identities = 13/31 (41%), Positives = 17/31 (53%)
Frame = +1
Query: 14 EQLRTEFQDLRTTLHQQQEDVTASLRNLGLQ 44
EQLR E Q L + D+ + LR LG+Q
Sbjct: 1486 EQLRVEIQKGLNQLEMRCHDMPSLLRGLGIQ 1578
>TC220727
Length = 479
Score = 24.3 bits (51), Expect = 9.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 34 VTASLRNLGLQDVSADGKKAESQA*EAKIEEID*KEQQVL 73
V +LRN VS DGKK + K+E+++ E + L
Sbjct: 289 VAQTLRNSASLKVSEDGKKVGRKTELPKLEDVEQVEIRTL 408
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.331 0.144 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,618,973
Number of Sequences: 63676
Number of extensions: 18024
Number of successful extensions: 72
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of query: 107
length of database: 12,639,632
effective HSP length: 83
effective length of query: 24
effective length of database: 7,354,524
effective search space: 176508576
effective search space used: 176508576
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0360.9