BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0360.7
(485 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC226342 homologue to UP|NPM2_MOUSE (Q80W85) Nucleoplasmin 2, pa... 548 e-156
TC230475 289 2e-78
TC230476 211 5e-75
TC226341 67 2e-11
TC218019 similar to UP|Q6NPT7 (Q6NPT7) At1g65040, partial (20%) 63 3e-10
BE191375 52 5e-07
TC230808 similar to UP|Q9FFJ7 (Q9FFJ7) Similarity to C3HC4-type ... 52 6e-07
TC232709 weakly similar to UP|Q9LZJ6 (Q9LZJ6) RING-H2 zinc finge... 50 2e-06
TC227743 similar to PIR|E86326|E86326 protein F18O14.3 [imported... 49 4e-06
TC206224 similar to PIR|E86326|E86326 protein F18O14.3 [imported... 48 9e-06
TC227914 similar to UP|Q6R567 (Q6R567) Ring domain containing pr... 48 1e-05
TC218937 similar to UP|PEXA_ARATH (Q9SYU4) Peroxisome assembly p... 47 1e-05
CO982502 47 2e-05
CF806639 47 2e-05
TC227380 weakly similar to UP|Q7EYM0 (Q7EYM0) Zinc finger protei... 47 2e-05
BE802170 46 3e-05
TC228166 similar to GB|AAM16172.1|20334832|AY094016 At2g39720/T5... 46 3e-05
TC208407 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finge... 46 3e-05
TC229224 weakly similar to UP|Q9LUR1 (Q9LUR1) RING zinc finger p... 46 4e-05
TC231577 weakly similar to UP|O23446 (O23446) Regulatory protein... 45 7e-05
>TC226342 homologue to UP|NPM2_MOUSE (Q80W85) Nucleoplasmin 2, partial (8%)
Length = 1326
Score = 548 bits (1412), Expect = e-156
Identities = 268/331 (80%), Positives = 295/331 (88%), Gaps = 1/331 (0%)
Frame = +3
Query: 156 ETVPLVSSSASLAGSVQGDGDAAGNGAESDSRGSSSYQRYDIQQVAKWIEQILPFSLLLL 215
E VPLVS + G + ++ + + S S SS+YQRYDIQQVAKWIEQILPFSLLLL
Sbjct: 27 ERVPLVSLDDGIGGVRESSSSSSSSSSSSSS--SSTYQRYDIQQVAKWIEQILPFSLLLL 200
Query: 216 IVFIRQHLQGFFVTIWISAVMFKSNEIVKKQTALKGDRKVSVLVGISFAFILQVTCIYWW 275
IVFIRQHLQGFFVTI ISAVMFKSNEIVKKQTALKGDRKVSVL+GISFAF+L V IYWW
Sbjct: 201 IVFIRQHLQGFFVTICISAVMFKSNEIVKKQTALKGDRKVSVLLGISFAFVLHVISIYWW 380
Query: 276 YRNDDLLYPLIMLPPR-PTPFWHSVFIILVNDVLVRQAAMVFKCFLLIYYKNGKGHNFRR 334
Y+NDDLLYPL MLPP+ P PFWH++FIILVND LVRQAAM FKC LLIYYKNG+GHNFRR
Sbjct: 381 YQNDDLLYPLAMLPPKTPPPFWHTIFIILVNDTLVRQAAMAFKCLLLIYYKNGRGHNFRR 560
Query: 335 QAQMLTLVEYMLLLYRALLPTLVWYRFFLNRDYGSLFSSLTTGLYLTFKLTSIIEKVRGF 394
Q QMLTLVEY LLLYRALLPT VWYRFFLN+DYGSLFSSLTTGLYLTFKLTS++EKV+ F
Sbjct: 561 QGQMLTLVEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCF 740
Query: 395 ISAFKALSRKDVHYGVYATMEQVNAAGDLCAICQEKMHSPVLLRCKHIFCEECVSEWFER 454
+SA KALS+K+VHYGV+AT EQVNAAGD+CAICQEKM +P+LL CKH+FCEECVSEWFER
Sbjct: 741 VSALKALSKKEVHYGVHATTEQVNAAGDMCAICQEKMQAPILLSCKHMFCEECVSEWFER 920
Query: 455 ERTCPLCRALVKPADLQTFGDGSTSLFFQLF 485
ERTCPLCRALVKPADL+TFGDGSTSLFFQLF
Sbjct: 921 ERTCPLCRALVKPADLRTFGDGSTSLFFQLF 1013
>TC230475
Length = 528
Score = 289 bits (740), Expect = 2e-78
Identities = 133/160 (83%), Positives = 150/160 (93%)
Frame = +3
Query: 326 NGKGHNFRRQAQMLTLVEYMLLLYRALLPTLVWYRFFLNRDYGSLFSSLTTGLYLTFKLT 385
N +G N+R+Q QMLTLVEY+LLLYRALLPT VWYRFFLN++YGSLFSSL TGLYLTFKLT
Sbjct: 3 NSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLT 182
Query: 386 SIIEKVRGFISAFKALSRKDVHYGVYATMEQVNAAGDLCAICQEKMHSPVLLRCKHIFCE 445
S++EKV+ F +A KALSRK++HYG YAT EQVNAAGDLCAICQEKMH+P+LLRCKHIFCE
Sbjct: 183 SVVEKVQSFFAAVKALSRKEMHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCE 362
Query: 446 ECVSEWFERERTCPLCRALVKPADLQTFGDGSTSLFFQLF 485
+CVSEWFERERTCPLCRALVKPADL++FGDGSTSLFFQLF
Sbjct: 363 DCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 482
>TC230476
Length = 531
Score = 211 bits (536), Expect(2) = 5e-75
Identities = 96/127 (75%), Positives = 112/127 (87%), Gaps = 1/127 (0%)
Frame = +3
Query: 265 FILQVTCIYWWYRNDDLLYPLIMLPPRPTP-FWHSVFIILVNDVLVRQAAMVFKCFLLIY 323
F L V +YWWY+NDDL+YPLIMLPP+ P FWH++FII+VND L RQAAMVFKC LL+Y
Sbjct: 12 FALHVVGVYWWYQNDDLMYPLIMLPPKDIPPFWHAIFIIMVNDTLFRQAAMVFKCILLMY 191
Query: 324 YKNGKGHNFRRQAQMLTLVEYMLLLYRALLPTLVWYRFFLNRDYGSLFSSLTTGLYLTFK 383
YKN +G N+R+Q QMLTLVEY+LLLYRALLPT VWYRFFLN++YGSLFSSL TGLYLTFK
Sbjct: 192 YKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFK 371
Query: 384 LTSIIEK 390
LTS++EK
Sbjct: 372 LTSVVEK 392
Score = 89.4 bits (220), Expect(2) = 5e-75
Identities = 39/45 (86%), Positives = 43/45 (94%)
Frame = +2
Query: 399 KALSRKDVHYGVYATMEQVNAAGDLCAICQEKMHSPVLLRCKHIF 443
KALSRK++HYG YAT EQVNAAGDLCAICQEKMH+P+LLRCKHIF
Sbjct: 395 KALSRKEMHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIF 529
>TC226341
Length = 672
Score = 66.6 bits (161), Expect = 2e-11
Identities = 30/31 (96%), Positives = 31/31 (99%)
Frame = +2
Query: 455 ERTCPLCRALVKPADLQTFGDGSTSLFFQLF 485
ERTCPLCRALVKPADL+TFGDGSTSLFFQLF
Sbjct: 197 ERTCPLCRALVKPADLRTFGDGSTSLFFQLF 289
>TC218019 similar to UP|Q6NPT7 (Q6NPT7) At1g65040, partial (20%)
Length = 1162
Score = 63.2 bits (152), Expect = 3e-10
Identities = 27/58 (46%), Positives = 37/58 (63%)
Frame = +3
Query: 412 ATMEQVNAAGDLCAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPAD 469
AT E++NA+ C IC+E+M + L C H+F C+ W ER+ TCP CRALV P +
Sbjct: 87 ATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPE 260
>BE191375
Length = 495
Score = 52.4 bits (124), Expect = 5e-07
Identities = 22/54 (40%), Positives = 29/54 (52%), Gaps = 4/54 (7%)
Frame = -2
Query: 424 CAICQEKMHSPVLLR----CKHIFCEECVSEWFERERTCPLCRALVKPADLQTF 473
CA+C K +LR CKH F +C+ W E+ +CP+CR V P D TF
Sbjct: 320 CAVCLSKFEDVEILRLLPKCKHAFHIDCIDHWLEKHSSCPICRHRVNPEDHTTF 159
>TC230808 similar to UP|Q9FFJ7 (Q9FFJ7) Similarity to C3HC4-type RING zinc
finger protein, partial (28%)
Length = 896
Score = 52.0 bits (123), Expect = 6e-07
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +1
Query: 424 CAICQEKMHSPVLLR----CKHIFCEECVSEWFERERTCPLCRALVKPADL 470
CA+C K + +LR CKH F ECV W + TCPLCR V P D+
Sbjct: 88 CAVCLNKFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDI 240
>TC232709 weakly similar to UP|Q9LZJ6 (Q9LZJ6) RING-H2 zinc finger protein
ATL5 (At3g62690), partial (19%)
Length = 987
Score = 50.4 bits (119), Expect = 2e-06
Identities = 27/66 (40%), Positives = 35/66 (52%), Gaps = 5/66 (7%)
Frame = +3
Query: 424 CAICQ----EKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPADLQTFGD-GST 478
C++C E S VL CKHIF +CV +WF TCP+CR +V P G G+T
Sbjct: 384 CSVCLGTIVEDTISRVLPNCKHIFHVDCVDKWFNSNTTCPICRTVVDPKVQPEHGHLGAT 563
Query: 479 SLFFQL 484
L Q+
Sbjct: 564 RLHNQV 581
>TC227743 similar to PIR|E86326|E86326 protein F18O14.3 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(73%)
Length = 1212
Score = 49.3 bits (116), Expect = 4e-06
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +2
Query: 418 NAAGDLCAICQEKMHSPVLLRCKHIFCEECVSEWF---ERERTCPLCRALVKPADL-QTF 473
+AA C IC E P++ C H+FC C+ +W + R CP+C+ALV+ L +
Sbjct: 200 DAANFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLY 379
Query: 474 GDGSTS 479
G G +S
Sbjct: 380 GRGKSS 397
>TC206224 similar to PIR|E86326|E86326 protein F18O14.3 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(43%)
Length = 1080
Score = 48.1 bits (113), Expect = 9e-06
Identities = 25/66 (37%), Positives = 34/66 (50%), Gaps = 5/66 (7%)
Frame = +1
Query: 418 NAAGDL-CAICQEKMHSPVLLRCKHIFCEECVSEWF---ERERTCPLCRALVKPADL-QT 472
N AGD C IC + PV+ C H+FC C+ W + CP+C+ALV+ L
Sbjct: 295 NDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPL 474
Query: 473 FGDGST 478
+G G T
Sbjct: 475 YGRGKT 492
>TC227914 similar to UP|Q6R567 (Q6R567) Ring domain containing protein,
partial (29%)
Length = 1078
Score = 47.8 bits (112), Expect = 1e-05
Identities = 25/76 (32%), Positives = 39/76 (50%), Gaps = 13/76 (17%)
Frame = +1
Query: 418 NAAGDL-CAICQEKMHSPVLLRCKHIFCEECVSEWFERERT-----------CPLCRALV 465
NA+GD C IC E + PV+ C H++C C+ +W + T CP+C++ V
Sbjct: 274 NASGDFDCNICLECVQDPVVTLCGHLYCWPCIYKWLHFQSTSLDDEEQQRPQCPVCKSEV 453
Query: 466 KPADL-QTFGDGSTSL 480
+ L +G G T+L
Sbjct: 454 SQSSLVPLYGRGQTTL 501
>TC218937 similar to UP|PEXA_ARATH (Q9SYU4) Peroxisome assembly protein 10
(Peroxin-10) (AthPEX10) (Pex10p) (PER8), partial (73%)
Length = 1217
Score = 47.4 bits (111), Expect = 1e-05
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 424 CAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPADL 470
C +C P C H+FC C++EW + CPLCR + + L
Sbjct: 958 CTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSL 1098
>CO982502
Length = 677
Score = 47.0 bits (110), Expect = 2e-05
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 424 CAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPADL 470
C +C P C H+FC C++EW + CPLCR + + L
Sbjct: 236 CTLCLSNPQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSL 96
>CF806639
Length = 708
Score = 46.6 bits (109), Expect = 2e-05
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +1
Query: 424 CAICQEKMHSPVLLR----CKHIFCEECVSEWFERERTCPLCRALVKPAD 469
CA+C + LR C H+F EC+ EW TCP+CRA + P D
Sbjct: 355 CAVCLCEFEDTETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRANLVPTD 504
>TC227380 weakly similar to UP|Q7EYM0 (Q7EYM0) Zinc finger protein
family-like, partial (70%)
Length = 770
Score = 46.6 bits (109), Expect = 2e-05
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +2
Query: 424 CAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVK---PADLQTFGD 475
C IC E VL C H+ C C EW R ++CP CR +K DL F D
Sbjct: 245 CGICMEMNSKIVLPDCNHVMCLTCYHEWRTRSQSCPFCRDSLKRVNSGDLWVFTD 409
>BE802170
Length = 407
Score = 46.2 bits (108), Expect = 3e-05
Identities = 16/49 (32%), Positives = 28/49 (56%), Gaps = 9/49 (18%)
Frame = +2
Query: 424 CAICQEKMHSPVLLRCKHIFCEECVSEWFE---------RERTCPLCRA 463
C IC E H PV+ C H++C C+ +W + +++TCP+C++
Sbjct: 248 CNICMESAHDPVVTLCGHLYCWPCIYKWLDVQSSSVEPYQQQTCPVCKS 394
>TC228166 similar to GB|AAM16172.1|20334832|AY094016 At2g39720/T5I7.2
{Arabidopsis thaliana;} , partial (36%)
Length = 875
Score = 46.2 bits (108), Expect = 3e-05
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Frame = +2
Query: 424 CAICQE--KMHSPVL-LRCKHIFCEECVSEWFERERTCPLCRALVKPADLQT 472
CA+C+E ++H+ L CKHI+ EC+ W +CP+CR + P+DL+T
Sbjct: 578 CAVCKEVFELHAEARELPCKHIYHSECILPWLSMRNSCPVCRHEL-PSDLET 730
>TC208407 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger-like
protein, partial (36%)
Length = 644
Score = 46.2 bits (108), Expect = 3e-05
Identities = 19/48 (39%), Positives = 25/48 (51%), Gaps = 4/48 (8%)
Frame = +2
Query: 424 CAICQEKMHSPVLLR----CKHIFCEECVSEWFERERTCPLCRALVKP 467
CA+C + LR C H+F EC+ EW TCP+CRA + P
Sbjct: 311 CAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVP 454
>TC229224 weakly similar to UP|Q9LUR1 (Q9LUR1) RING zinc finger protein-like,
partial (38%)
Length = 937
Score = 45.8 bits (107), Expect = 4e-05
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +1
Query: 421 GDLCAICQEKMH----SPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPA 468
G CA+C + VL +C H F EC+ WF TCPLCRA V+ A
Sbjct: 358 GPECAVCLSEFEPGETGRVLPKCNHSFHIECIDMWFHSHDTCPLCRAPVERA 513
>TC231577 weakly similar to UP|O23446 (O23446) Regulatory protein, partial
(15%)
Length = 779
Score = 45.1 bits (105), Expect = 7e-05
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +1
Query: 424 CAICQEKM----HSPVLLRCKHIFCEECVSEWFERERTCPLCRALVKP 467
CA+C + VL CKH F C+ W TCPLCR VKP
Sbjct: 385 CAVCLSEFADGDEGRVLPNCKHAFHAHCIDTWIGSHSTCPLCRTPVKP 528
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,818,646
Number of Sequences: 63676
Number of extensions: 359579
Number of successful extensions: 2546
Number of sequences better than 10.0: 286
Number of HSP's better than 10.0 without gapping: 2461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2514
length of query: 485
length of database: 12,639,632
effective HSP length: 101
effective length of query: 384
effective length of database: 6,208,356
effective search space: 2384008704
effective search space used: 2384008704
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0360.7