BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0360.4
(968 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC208865 similar to UP|Q8LPT3 (Q8LPT3) AT4g27870/T27E11_110, par... 326 3e-89
CO984700 109 7e-24
TC212302 weakly similar to UP|Q8W4P8 (Q8W4P8) AT4g27860/T27E11_1... 76 6e-14
TC226833 UP|Q21035 (Q21035) Cadherin family protein 9, partial (3%) 35 0.21
TC206217 similar to UP|ACA9_ARATH (Q9LU41) Potential calcium-tra... 34 0.36
TC218971 similar to UP|Q9XJ26 (Q9XJ26) NtWRKY1, partial (11%) 32 1.8
TC209935 32 1.8
TC215140 similar to GB|AAL32703.1|17065098|AY062625 nucleotide s... 32 1.8
TC206433 30 3.9
TC205560 similar to GB|BAA97361.1|8843813|AB023042 Ca2+-transpor... 30 3.9
TC228773 weakly similar to UP|Q9M4U3 (Q9M4U3) NAC1, partial (31%) 30 5.1
TC217798 similar to GB|AAP68318.1|31711924|BT008879 At4g37130 {A... 30 5.1
TC217467 similar to UP|Q949B2 (Q949B2) AP2 domain-containing pro... 30 5.1
TC210783 weakly similar to UP|O14760 (O14760) Small intestinal m... 30 5.1
TC217617 similar to UP|Q9LYL2 (Q9LYL2) Alpha-galactosidase-like ... 30 5.1
TC233315 similar to UP|Q8CI40 (Q8CI40) Chek1 protein (Fragment),... 30 6.7
TC227220 similar to GB|AAN15531.1|23198008|BT000212 expressed pr... 30 6.7
TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 30 6.7
TC206645 30 6.7
TC225232 similar to UP|Q9SZZ1 (Q9SZZ1) Fibrillarin-like protein ... 29 8.8
>TC208865 similar to UP|Q8LPT3 (Q8LPT3) AT4g27870/T27E11_110, partial (6%)
Length = 974
Score = 326 bits (835), Expect = 3e-89
Identities = 171/239 (71%), Positives = 194/239 (80%)
Frame = +1
Query: 730 NVPVEGAVVPGSDTQVLIDEQPRDETGERQQWEVLKSIVYGGLVESITSLGIVSSAVSSG 789
+VP E A++ T V EQPRDE GE Q WE+LKSIVYGGL+ESITSLGIVSSAVSSG
Sbjct: 22 DVPAEDAIITEPRTLVQNGEQPRDEVGEPQGWEILKSIVYGGLIESITSLGIVSSAVSSG 201
Query: 790 AAPLNIIALGLANLVGGLFILGHNLNDLKNNHSGGDQQQTNAQEDQYHELLGRRANFLLH 849
A PLNIIALG AN++GGLFILG NL DLK ++SGGDQ QTN Q D+Y E LGRR NFLLH
Sbjct: 202 ATPLNIIALGFANIIGGLFILGDNLIDLKKDNSGGDQTQTNVQ-DRYQESLGRRENFLLH 378
Query: 850 AVVAVISFIIFGAVPLAIYGVLINKNYSSDVKLGIVAATSVVCIILLAIAKVYTRKPPKY 909
VVAV+SF+IFGA PL IYG+LINKNY ++VKL VAATS+VCIILLAI KVYT K PK
Sbjct: 379 VVVAVLSFLIFGAFPLVIYGLLINKNYYTEVKLATVAATSIVCIILLAIGKVYTSKAPKS 558
Query: 910 YFKTMLYYVALALGASGISYIAGILIKELLEKISNSESGFAFITMPNSDTSMEPAWMSY 968
Y KT+LYYV LA+ ASG+SYIAG LIK+ LEK++ ESGFA ITMP SDTS+ AWMSY
Sbjct: 559 YIKTVLYYVTLAISASGVSYIAGNLIKDFLEKLNQPESGFA-ITMPISDTSVGSAWMSY 732
>CO984700
Length = 719
Score = 109 bits (272), Expect = 7e-24
Identities = 62/149 (41%), Positives = 93/149 (61%), Gaps = 3/149 (2%)
Frame = +1
Query: 814 LNDLKNNHSGGDQQQTNAQEDQYHELLGRRANFLLHAVVAVISFIIFGAVPLAIYGVLIN 873
L DLK + +T AQED+Y+ELLG+R NF LHA A++SF+IFG VP YG
Sbjct: 40 LRDLKASQPR-QGSETQAQEDKYYELLGKRENFYLHAFFAILSFLIFGLVPPIAYGFSFR 216
Query: 874 KNYSSDVKLGIVAATSVVCIILLAIAKVYTRKPPKY--YFKTMLYYVALALGASGISYIA 931
++ D+KL VA S++CI LL +AK + ++ + YFKT+ +YV + AS ++Y A
Sbjct: 217 ESNDKDLKLAAVAVASLICITLLGMAKAHIQRSNTFMTYFKTVTFYVTSGVLASLLTYEA 396
Query: 932 GILIKELLEKISNSESGFAF-ITMPNSDT 959
G L+K+L+E++ E+ F +T+P T
Sbjct: 397 GALMKKLVEQLGWFETKSNFGLTLP*KST 483
>TC212302 weakly similar to UP|Q8W4P8 (Q8W4P8) AT4g27860/T27E11_100, partial
(8%)
Length = 919
Score = 76.3 bits (186), Expect = 6e-14
Identities = 41/84 (48%), Positives = 58/84 (68%), Gaps = 5/84 (5%)
Frame = +3
Query: 737 VVPGSDTQVLIDEQP-----RDETGERQQWEVLKSIVYGGLVESITSLGIVSSAVSSGAA 791
VVP D+ ++ + P R E+ + WE+LKSIVYGGL E + SL +V+SA S A
Sbjct: 645 VVPIPDSSPIMPQGPPFTITRPES--TKGWEILKSIVYGGLAELLASLSVVTSAASVDAT 818
Query: 792 PLNIIALGLANLVGGLFILGHNLN 815
L+I+ALG+ANL+GGL +LGHN++
Sbjct: 819 TLSIVALGVANLIGGLSVLGHNVS 890
Score = 34.7 bits (78), Expect = 0.21
Identities = 26/122 (21%), Positives = 49/122 (39%), Gaps = 1/122 (0%)
Frame = +3
Query: 236 QDLKEFDVEVVLAKQETHDLFCPNCNSCITKRVILKKRKRNIHSLDNKAKRDKLDIVASS 295
++++E ++ + H +CPNC+ I K + R+++ + + ++
Sbjct: 273 EEVREVYLKNMFMMPPNHGFYCPNCHIDINKVLFCTTRQQDEFEIKSPG------MLLKG 434
Query: 296 DPVNSSAQESDRGVSENVTSEIVSVETPDDNYHPEREPESDPE-VFRCLACFSFFIPSGK 354
P+ + + VT+ + EPE D E + RC CFS I GK
Sbjct: 435 PPILPTFTQPPVTTEPTVTTPTLI------------EPEQDNECLVRCSTCFSLLIQKGK 578
Query: 355 GF 356
F
Sbjct: 579 EF 584
>TC226833 UP|Q21035 (Q21035) Cadherin family protein 9, partial (3%)
Length = 1331
Score = 34.7 bits (78), Expect = 0.21
Identities = 62/278 (22%), Positives = 110/278 (39%), Gaps = 7/278 (2%)
Frame = +2
Query: 166 DVQIENSVTQRNLCSEVNDQCMKTVDDKVPSNSEVSPLHNSRDDTRATTVLDFHEETNIK 225
+V E V + D + ++ VP L S+ V D E I+
Sbjct: 173 EVDCEEIVQGEEKDASKEDISYRYANNVVPMAMNTKVLDGSKKFAEIVEV-DIDEILQIE 349
Query: 226 EGSELVKEIDQDLKEFDVEVVLAKQETHDLFCPNCNSCITKRVILKKRKRNIHS--LDNK 283
E +E VK+I KE D+ V+ K+ T+ + I R++ +HS + +
Sbjct: 350 EANEEVKDIPN--KEVDMSVLRGKRSTYIRSEVEHALETLDKAISMVREQRLHSRVVSSS 523
Query: 284 AKRDKLDIVASSDPVNSSAQESDRGVSENVTSEIVSVETPDDNYHPEREPES---DPEV- 339
++ + + D V++ + + + S+N VSVE P+ + E+ +P +
Sbjct: 524 VADEESPFMKNDDKVDTYSSKLTQPSSKNE----VSVEVPNGDISEGASQEALGNNPGIQ 691
Query: 340 -FRCLACFSFFIPSGKGFNLFRNFGGSRKQETSQNATSITAQNLQNPSTLPGSNANWFTS 398
RC P+ K N + S +Q S TSI L + P N
Sbjct: 692 NSRCTGTD----PNSKEVNSNKVVPTSSEQNVS---TSIL---LSQAVSHPLGNGAILDQ 841
Query: 399 LFTSNKGKTATAKGNTSLEHSTTAHVEQHCSTSVTSNV 436
SNK + +TSL+H+ + ++ +T VT ++
Sbjct: 842 TTISNKQLNTDSVQDTSLDHADKSSRQKKLNTIVTQSM 955
>TC206217 similar to UP|ACA9_ARATH (Q9LU41) Potential calcium-transporting
ATPase 9, plasma membrane-type (Ca(2+)-ATPase isoform
9) , partial (32%)
Length = 1383
Score = 33.9 bits (76), Expect = 0.36
Identities = 56/282 (19%), Positives = 114/282 (39%), Gaps = 24/282 (8%)
Frame = +1
Query: 688 EEVQKDINKEISASDKKES-----------KGGDVIVVVDREAIESTTSQTAD---NVPV 733
E+ ++DI K+I+ + KGG+V+ V ++ AD ++ +
Sbjct: 82 EKEREDIAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGI 261
Query: 734 EGAVVPGSDTQVLIDEQPRDETGERQQW-----EVLKSIVYGGLVESITSLGI-VSSAVS 787
+G V + ++I + + +W ++ + L ++ +L I V +A++
Sbjct: 262 QGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAIT 441
Query: 788 SGAAPLNIIALGLANLV----GGLFILGHNLNDLKNNHSGGDQQQTNAQEDQYHELLGRR 843
SG PLN + L NL+ G L + D + S +E ++ R
Sbjct: 442 SGDVPLNAVQLLWVNLIMDTLGALALATEPPTDRLMHRS-----PVGRRESLITNIMWR- 603
Query: 844 ANFLLHAVVAVISFIIFGAVPLAIYGVLINKNYSSDVKLGIVAATSVVCIILLAIAKVYT 903
N ++ AV + ++ +I + + VK ++ V+C I +
Sbjct: 604 -NLIVQAVYQIAVLLVLNFCGESILPKQNTRADAFQVKNTLIFNAFVLCQI---FNEFNA 771
Query: 904 RKPPKYYFKTMLYYVALALGASGISYIAGILIKELLEKISNS 945
RKP + + L +G G+++I I+I E L K +++
Sbjct: 772 RKPDEMNVFRGVTKNKLFVGIVGVTFILQIIIIEFLGKFTST 897
>TC218971 similar to UP|Q9XJ26 (Q9XJ26) NtWRKY1, partial (11%)
Length = 422
Score = 31.6 bits (70), Expect = 1.8
Identities = 25/103 (24%), Positives = 49/103 (47%)
Frame = +2
Query: 232 KEIDQDLKEFDVEVVLAKQETHDLFCPNCNSCITKRVILKKRKRNIHSLDNKAKRDKLDI 291
K++++ L E V ++ K E H+ CP+ N C + + ++D+ + +
Sbjct: 74 KKVERSL-EGHVTAIIYKGE-HNHQCPHPNKCSKDTMTSNENSNMQGNVDSTYQGTSTNS 247
Query: 292 VASSDPVNSSAQESDRGVSENVTSEIVSVETPDDNYHPEREPE 334
++ DP +S A +DR + + E+ ET D + E EP+
Sbjct: 248 MSKMDPESSQA-TADRLSGTSDSEEVADHETEVDEKNVEPEPK 373
>TC209935
Length = 850
Score = 31.6 bits (70), Expect = 1.8
Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 13/194 (6%)
Frame = +3
Query: 318 VSVETPDDNYHPEREPESDPEVFRCLACFSFFIPSGKGFNLF-RNFGGSRKQETSQNATS 376
++ ET D+ HP PES P+ SF++ + ++ + RN RK+ T
Sbjct: 174 IACETLADDVHPTDPPESHPD----SPPESFWLSRDEEYDWWDRNAVYERKESTK----- 326
Query: 377 ITAQNLQNPSTLPGSNANWFTSLFTSN-KGKTATAKGNTSLEHSTTAHVEQHCSTSVTSN 435
A N + + PG N++ + F+ N K K +T G + ++ V+ + + SN
Sbjct: 327 --ASNNNSTNLNPGINSSNNSQRFSLNFKSKASTIIGLPKPQKTSFVDVKNRRNHNKPSN 500
Query: 436 V----PASTDIGHLEGSLADTALIKNAKPAAENGGMSSQISSTAE-------SVKIGPGT 484
+ S +G E L + P++ ++ S + S K P T
Sbjct: 501 IRLFPKRSVSVGKSESGLVE--------PSSPKVSCMGRVRSKRDRNRKLRSSRKSSPDT 656
Query: 485 ENGIKFHTASGNEP 498
+ K H+ SG +P
Sbjct: 657 DAKEK-HSRSGKKP 695
>TC215140 similar to GB|AAL32703.1|17065098|AY062625 nucleotide sugar
epimerase-like protein {Arabidopsis thaliana;} , partial
(91%)
Length = 1885
Score = 31.6 bits (70), Expect = 1.8
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 370 TSQNATSITAQNLQNPSTLPGSNANW--FTSLFTSNKGKTAT 409
T+ + S + + +PST PG + W F+S TS+KGK +T
Sbjct: 850 TTTSTASPSPDSASSPSTAPGGDPTWLTFSSPRTSSKGKPST 975
>TC206433
Length = 1287
Score = 30.4 bits (67), Expect = 3.9
Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 2/145 (1%)
Frame = +1
Query: 526 VQSAGQDFIDLSSKEQLLTGNLKTNDGETSVDIIKTTANVEVMSSMSFSDGVVSKYESVQ 585
+Q+ G+DF ++ + + + + T +++ SS + G SK S
Sbjct: 424 LQTEGKDFNVKFKCSSSISKEVSDSKSQANQSSASTCHHIKD-SSFNLPKGSSSKQASSS 600
Query: 586 SVTTATSEKHFNAGETAKVS--VLNPSEGIPGFLAPTTIGSLILEQSQKDVDGTSENIKN 643
S++ + ++ F T+ + NPS +P + T E D GTS + K+
Sbjct: 601 SISGTSFQRQFCDATTSSYTR*PRNPSP*VPCSRSSTLCSH*TNEALSGD--GTSSDDKD 774
Query: 644 SYSSFTQSSVQSSGSSVPASVVASN 668
+ ++ SS SVP+S +S+
Sbjct: 775 CNTCILPTTTASSSCSVPSSTTSSS 849
>TC205560 similar to GB|BAA97361.1|8843813|AB023042 Ca2+-transporting
ATPase-like protein {Arabidopsis thaliana;} , partial
(27%)
Length = 1356
Score = 30.4 bits (67), Expect = 3.9
Identities = 42/190 (22%), Positives = 83/190 (43%), Gaps = 2/190 (1%)
Frame = +1
Query: 758 RQQWEVLKSIVYGGLVESITSLGI-VSSAVSSGAAPLNIIALGLANLVGGLFILGHNLND 816
R + ++ + L ++ +L I V +AVSSG PLN + L NL+ +
Sbjct: 241 RSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATE 420
Query: 817 LKNNHSGGDQQQTNAQEDQYHELLGRRANFLLHAVVAVISFIIFGAVPLAIYGVLIN-KN 875
+H D+ +E ++ R N L+ A+ V ++ ++I G+ + K+
Sbjct: 421 PPTDHL-MDRTPVGRREPLITNIMWR--NLLIQAMYQVSVLLVLNFRGISILGLSHDRKD 591
Query: 876 YSSDVKLGIVAATSVVCIILLAIAKVYTRKPPKYYFKTMLYYVALALGASGISYIAGILI 935
++ VK ++ V+C I + RKP ++ + L +G G++ + I+I
Sbjct: 592 HAIKVKNTLIFNAFVLCQI---FNEFNARKPDEFNIFKGVTRNYLFMGIIGLTVVLQIVI 762
Query: 936 KELLEKISNS 945
L K + +
Sbjct: 763 ILFLGKFTTT 792
>TC228773 weakly similar to UP|Q9M4U3 (Q9M4U3) NAC1, partial (31%)
Length = 1505
Score = 30.0 bits (66), Expect = 5.1
Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 1/76 (1%)
Frame = +2
Query: 304 ESDRGVSENVTSEIVSVETPDDNYHPEREPESDPE-VFRCLACFSFFIPSGKGFNLFRNF 362
E D ++ N + I +V+ PD + ER P SDP +F L + + G+G +F
Sbjct: 1052 EDDDTLAVNENNSIENVDDPDQANNAERGPCSDPHAIFEDLGDLNSLVGLGEG-----SF 1216
Query: 363 GGSRKQETSQNATSIT 378
+K E + +A T
Sbjct: 1217 SCGQKNEYTTSAMLYT 1264
>TC217798 similar to GB|AAP68318.1|31711924|BT008879 At4g37130 {Arabidopsis
thaliana;} , partial (30%)
Length = 1199
Score = 30.0 bits (66), Expect = 5.1
Identities = 20/72 (27%), Positives = 31/72 (42%)
Frame = +2
Query: 350 IPSGKGFNLFRNFGGSRKQETSQNATSITAQNLQNPSTLPGSNANWFTSLFTSNKGKTAT 409
+ SG GF+LF +S ++S+ + P+ PG + F S T +
Sbjct: 488 LSSGSGFSLFST-------PSSAPSSSMLSSLFTTPTPAPGPQTSLFGSTSVPGSASTPS 646
Query: 410 AKGNTSLEHSTT 421
GNT+ STT
Sbjct: 647 LFGNTTPLFSTT 682
>TC217467 similar to UP|Q949B2 (Q949B2) AP2 domain-containing protein Rap211,
partial (48%)
Length = 1166
Score = 30.0 bits (66), Expect = 5.1
Identities = 20/72 (27%), Positives = 30/72 (40%)
Frame = +2
Query: 614 PGFLAPTTIGSLILEQSQKDVDGTSENIKNSYSSFTQSSVQSSGSSVPASVVASNKQTSG 673
P +P I + + S D S ++ S SS+Q+ SS +SN G
Sbjct: 440 PASTSPKDIQAAAAKASALDFGHQSHEAESELSQAVSSSIQTQSSSS-----SSNSSLKG 604
Query: 674 IDAIFPSKPDLA 685
+D F PDL+
Sbjct: 605 VDDTFLDLPDLS 640
>TC210783 weakly similar to UP|O14760 (O14760) Small intestinal mucin MUC3
(Fragment), partial (5%)
Length = 735
Score = 30.0 bits (66), Expect = 5.1
Identities = 20/83 (24%), Positives = 43/83 (51%)
Frame = +3
Query: 162 ESDYDVQIENSVTQRNLCSEVNDQCMKTVDDKVPSNSEVSPLHNSRDDTRATTVLDFHEE 221
E+D +EN+ ++N+ E+ D+ V+ KV + + + ++++D + E
Sbjct: 306 ETDGGKVLENNGIKKNIVKEIEDKKAVGVE-KVEEDKKNGVVEDAKEDKK---------E 455
Query: 222 TNIKEGSELVKEIDQDLKEFDVE 244
+KE E KE+ +++KE + E
Sbjct: 456 DGVKEAKEDKKEVVEEVKEDNKE 524
>TC217617 similar to UP|Q9LYL2 (Q9LYL2) Alpha-galactosidase-like protein,
partial (89%)
Length = 1691
Score = 30.0 bits (66), Expect = 5.1
Identities = 11/24 (45%), Positives = 16/24 (65%)
Frame = -3
Query: 257 CPNCNSCITKRVILKKRKRNIHSL 280
CP+CN+C T + KR+ N+H L
Sbjct: 714 CPDCNNCHTSNNLHPKRQINLHHL 643
>TC233315 similar to UP|Q8CI40 (Q8CI40) Chek1 protein (Fragment), partial
(9%)
Length = 1014
Score = 29.6 bits (65), Expect = 6.7
Identities = 24/103 (23%), Positives = 45/103 (43%)
Frame = -3
Query: 569 SSMSFSDGVVSKYESVQSVTTATSEKHFNAGETAKVSVLNPSEGIPGFLAPTTIGSLILE 628
S F DG + + SV + S +F+ G + N SE ++ + G+++
Sbjct: 478 SRTCFIDGRIERVSSVHVNASFKSPNNFSLGPASHKVDTNSSEQRLSVISSSAHGTILNP 299
Query: 629 QSQKDVDGTSENIKNSYSSFTQSSVQSSGSSVPASVVASNKQT 671
+ DG+S+ + + S+ T + +S S VVA + T
Sbjct: 298 FPYSEKDGSSDFLPDINSNNTTPKL*TSALSETLQVVAYSGAT 170
>TC227220 similar to GB|AAN15531.1|23198008|BT000212 expressed protein
{Arabidopsis thaliana;} , partial (43%)
Length = 927
Score = 29.6 bits (65), Expect = 6.7
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Frame = +3
Query: 683 DLAPIEEVQKDINKEISASDKKESKGGDVIVVVDREAIESTTSQTADNVPVEGAVVPGSD 742
D++ +E +K + + + D D + + +A ++TSQ DN + S
Sbjct: 570 DVSKLEVFRKTLMQSLQEDDDNSGATPDTVAKIQSQASLTSTSQIGDNEASLPPAISSST 749
Query: 743 TQVLIDEQPRDETGERQQWEVLKSIVYGGLVESITSLG---IVSSAVS 787
D+Q D R +L + G IT G I+S++VS
Sbjct: 750 GNSFADDQESDAIRPRVSQNLL--LASQGSTPRITPPGSPPILSASVS 887
>TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 1056
Score = 29.6 bits (65), Expect = 6.7
Identities = 16/37 (43%), Positives = 23/37 (61%)
Frame = +3
Query: 636 GTSENIKNSYSSFTQSSVQSSGSSVPASVVASNKQTS 672
G + + +S SSF+ SS SS SS PAS +S+ +S
Sbjct: 294 GCNASSSSSSSSFSSSSAPSSSSSSPASSSSSSSSSS 404
>TC206645
Length = 929
Score = 29.6 bits (65), Expect = 6.7
Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 14/165 (8%)
Frame = +1
Query: 292 VASSDPV---NSSAQESDRGVSENVTSEIVSVETPDDNYHPEREPESDPEVFRCLACFSF 348
VA SD + NSS+++ D + + SV +PD+N+ + E ++ A
Sbjct: 64 VADSDQLAADNSSSKDFDNAENSATNDQSASVNSPDENFQLQTEVNAESGSPTLEASI-- 237
Query: 349 FIPSGKGFNLFRNFGGSRKQETSQNATSITAQN-----------LQNPSTLPGSNANWFT 397
S N + S K +++ S+TA+ Q+ ++ P ++
Sbjct: 238 ---SNGSINQEQRSEASPKSQSATKRASLTARERLKAARSINRYAQSKASKPDMSSRVLE 408
Query: 398 SLFTSNKGKTATAKGNTSLEHSTTAHVEQHCSTSVTSNVPASTDI 442
+ S+KG G + ++ ST T P +D+
Sbjct: 409 ASKQSDKGSGKKKSGLPEAPTNLFDDSKRGLSTGFTFQFPGGSDL 543
>TC225232 similar to UP|Q9SZZ1 (Q9SZZ1) Fibrillarin-like protein (Fibrillarin
2) (AtFib2), partial (83%)
Length = 1065
Score = 29.3 bits (64), Expect = 8.8
Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 1/162 (0%)
Frame = -2
Query: 277 IHSLDNKAKRDKLDIVASSDPVNSS-AQESDRGVSENVTSEIVSVETPDDNYHPEREPES 335
++ +DN + + + + +S P +SS ++S + V + S + ER P S
Sbjct: 464 LYCIDNSSWANHI*YMRNSGPGSSS*VKDSGSRFNPYVVN---STKDGSGQLRTERIPNS 294
Query: 336 DPEVFRCLACFSFFIPSGKGFNLFRNFGGSRKQETSQNATSITAQNLQNPSTLPGSNANW 395
L + F+ +G F + +F +R + S + T N +N G N N
Sbjct: 293 ------VLIFGTVFVLNGNPFLVVNSF--TRNKILSNKSIFFTLGN-ENAIMPMGLNHNL 141
Query: 396 FTSLFTSNKGKTATAKGNTSLEHSTTAHVEQHCSTSVTSNVP 437
TSL +++ TAT +++ +T + E+ S+ P
Sbjct: 140 ATSLHSTSAAATATTPASSAATTATASSFERRTPVSILPPPP 15
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.309 0.127 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,198,870
Number of Sequences: 63676
Number of extensions: 384844
Number of successful extensions: 1903
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1899
length of query: 968
length of database: 12,639,632
effective HSP length: 106
effective length of query: 862
effective length of database: 5,889,976
effective search space: 5077159312
effective search space used: 5077159312
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0360.4