BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0359.3
(1572 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 964 0.0
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 960 0.0
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 231 1e-60
TC232995 226 8e-59
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 216 5e-56
TC213445 122 2e-47
BM143109 172 8e-43
AI959950 170 6e-42
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl... 159 7e-39
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 152 9e-37
CO983516 152 9e-37
AI855982 148 2e-35
AI966222 110 2e-29
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 128 2e-29
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 125 1e-28
CO982036 124 4e-28
BG508993 119 1e-26
BU549979 117 5e-26
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 114 3e-25
BI321712 110 6e-24
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 964 bits (2493), Expect = 0.0
Identities = 483/996 (48%), Positives = 662/996 (65%)
Frame = +1
Query: 576 MLQISLIAPLKHQSWYLDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKIVGTGTIC 635
++ SL A K + WYLDSGCSRHMTG K ++ V FG KGKI+G G +
Sbjct: 1645 VVHTSLRASAK-EDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLV 1821
Query: 636 VDSSPCIDNVLLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNI 695
D P ++ VLLV GLT NL+SISQL D+G++V F + C ++ ++ S+ K+N
Sbjct: 1822 HDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNC 2001
Query: 696 YKIRLSELEAQNVKCLLSVNEEQWVWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDAL 755
Y E + CL S +E +WH+R GH +R + ++ VRG+PNLK +
Sbjct: 2002 YLWTPQETSYSST-CLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRI 2178
Query: 756 CEACQKGKFTKVPFNAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTW 815
C CQ GK K+ +TSR LELLH+DL GP++ ES+GGKRY V+VDD+SR+TW
Sbjct: 2179 CGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTW 2358
Query: 816 VKFLTRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGISHDFSC 875
V F+ K E+ VF ++Q EK C I R+RSDHG EFEN +F S GI+H+FS
Sbjct: 2359 VNFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSA 2538
Query: 876 PRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIPNRISVRPILNKTPY 935
TPQQNG+VERKNRTLQE AR ML + + WAEA+NTACYI NR+++R T Y
Sbjct: 2539 AITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLY 2718
Query: 936 ELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKT 995
E+WK KP++ +FH FG CY+L +++ K D KS + LGYS S+ +R +N+ +T
Sbjct: 2719 EIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRT 2898
Query: 996 IEESIHVRFDDKLDSDQSKLVEKFADLSINVSDKGKAPEEVEPEEDEPEEEAGPSNSQTL 1055
+ ESI+V DD + + + E NV+D K+ E E D +E+ +
Sbjct: 2899 VMESINVVVDDLSPARKKDVEEDVRTSGDNVADAAKSGENAE-NSDSATDESNINQPDKR 3075
Query: 1056 KKSRITAAHPKELILGNKDEPVRTRSAFRPSEETLLSLKGLVSLIEPKSIDEALQDKEWI 1115
+RI HPKELI+G+ + V TRS E ++S VS IEPK++ EAL D+ WI
Sbjct: 3076 SSTRIQKMHPKELIIGDPNRGVTTRSR----EVEIVSNSCFVSKIEPKNVKEALTDEFWI 3243
Query: 1116 LAMEEELNQFSKNDVWSLVKKPENVHVIGTKWVFRNKLNEKGEVVRNKARLVAQGYSQQE 1175
AM+EEL QF +N+VW LV +PE +VIGTKW+F+NK NE+G + RNKARLVAQGY+Q E
Sbjct: 3244 NAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIE 3423
Query: 1176 GIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDE 1235
G+D+ ETFAPVARLE+IRLL+ + L+QMDVKSAFLNGY++EEVYV QP GF D
Sbjct: 3424 GVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADP 3603
Query: 1236 RKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIY 1295
PDHV++LKK+LYGLKQAPRAWYERL+ FL + + +G +D TLF K ++++I QIY
Sbjct: 3604 THPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIY 3783
Query: 1296 VDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELL 1355
VDDI+FG + + + F + MQ+EFEMS++GEL YFLG+QV Q + ++ QS+Y K ++
Sbjct: 3784 VDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIV 3963
Query: 1356 KKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCA 1415
KKF M ++ +TP L K++ V Q LYR MIGSLLYLTASRPDI ++V +CA
Sbjct: 3964 KKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCA 4143
Query: 1416 RFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGN 1475
R+Q++P+ +HLT VKRIL+Y+ GT++ G+MY S L GYCDAD+AG +RKST G
Sbjct: 4144 RYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGG 4323
Query: 1476 CQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCD 1535
C +LG+NL+SW SK+Q+ ++LSTAEAEYI+A +Q++WMK L++Y + + + +YCD
Sbjct: 4324 CFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCD 4503
Query: 1536 NTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVL 1571
N +AI++SKNP+ HSR KHI++++H+IRD V V+
Sbjct: 4504 NMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVI 4611
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 960 bits (2482), Expect = 0.0
Identities = 484/998 (48%), Positives = 662/998 (65%), Gaps = 2/998 (0%)
Frame = +1
Query: 576 MLQISLIAPLKHQSWYLDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKIVGTGTIC 635
++ SL A K + WYLDSGCSRHMTG K ++ V FG KGKI G G +
Sbjct: 1648 VVHTSLRASAK-EDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLV 1824
Query: 636 VDSSPCIDNVLLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNI 695
D P ++ VLLV GLT NL+SISQL D+G++V F + C ++ ++ S+ K+N
Sbjct: 1825 HDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNC 2004
Query: 696 YKIRLSELEAQNVKCLLSVNEEQWVWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDAL 755
Y E + CL S +E +WH+R GH +R + ++ VRG+PNLK +
Sbjct: 2005 YLWTPQETSYSST-CLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRI 2181
Query: 756 CEACQKGKFTKVPFNAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTW 815
C CQ GK K+ +TSR LELLH+DL GP++ ES+GGKRY V+VDD+SR+TW
Sbjct: 2182 CGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTW 2361
Query: 816 VKFLTRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGISHDFSC 875
V F+ K ++ VF ++Q EK C I R+RSDHG EFEN KF S GI+H+FS
Sbjct: 2362 VNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSA 2541
Query: 876 PRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIPNRISVRPILNKTPY 935
TPQQNG+VERKNRTLQE AR ML + + WAEA+NTACYI NR+++R T Y
Sbjct: 2542 AITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLY 2721
Query: 936 ELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKT 995
E+WK KP + +FH FG CY+L +++ K D KS + LGYS S+ +R +N+ +T
Sbjct: 2722 EIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRT 2901
Query: 996 IEESIHVRFDDKLDSDQSKLVEKFADLSINVSDKGKAPEEVEPEEDEPEEEAGPSNSQTL 1055
+ ESI+V DD + + + E NV+D K+ E E + +E P+ +Q
Sbjct: 2902 VMESINVVVDDLTPARKKDVEEDVRTSGDNVADTAKSAENAENSDSATDE---PNINQPD 3072
Query: 1056 KKS--RITAAHPKELILGNKDEPVRTRSAFRPSEETLLSLKGLVSLIEPKSIDEALQDKE 1113
K+ RI HPKELI+G+ + V TRS E ++S VS IEPK++ EAL D+
Sbjct: 3073 KRPSIRIQKMHPKELIIGDPNRGVTTRSR----EIEIVSNSCFVSKIEPKNVKEALTDEF 3240
Query: 1114 WILAMEEELNQFSKNDVWSLVKKPENVHVIGTKWVFRNKLNEKGEVVRNKARLVAQGYSQ 1173
WI AM+EEL QF +N+VW LV +PE +VIGTKW+F+NK NE+G + RNKARLVAQGY+Q
Sbjct: 3241 WINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQ 3420
Query: 1174 QEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFE 1233
EG+D+ ETFAPVARLE+IRLL+ + L+QMDVKSAFLNGY++EE YV QP GF
Sbjct: 3421 IEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFV 3600
Query: 1234 DERKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQ 1293
D PDHV++LKK+LYGLKQAPRAWYERL+ FL + + +G +D TLF K ++++I Q
Sbjct: 3601 DPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQ 3780
Query: 1294 IYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKE 1353
IYVDDI+FG + + + F + MQ+EFEMS++GEL YFLG+QV Q + ++ QSKY K
Sbjct: 3781 IYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKN 3960
Query: 1354 LLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTASRPDILFSVHL 1413
++KKF M ++ +TP L K++ V Q LYR MIGSLLYLTASRPDI ++V +
Sbjct: 3961 IVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGV 4140
Query: 1414 CARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTF 1473
CAR+Q++P+ +HL VKRIL+Y+ GT++ G+MY S+ L GYCDAD+AG +RKST
Sbjct: 4141 CARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKSTS 4320
Query: 1474 GNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIY 1533
G C +LG+NL+SW SK+Q+ ++LSTAEAEYI+A +Q++WMK L++Y + + + +Y
Sbjct: 4321 GGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLY 4500
Query: 1534 CDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVL 1571
CDN +AI++SKNP+ HSR KHI++++H+IRD V V+
Sbjct: 4501 CDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVI 4614
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 231 bits (590), Expect = 1e-60
Identities = 110/153 (71%), Positives = 132/153 (85%)
Frame = -3
Query: 1116 LAMEEELNQFSKNDVWSLVKKPENVHVIGTKWVFRNKLNEKGEVVRNKARLVAQGYSQQE 1175
+AM+EELNQF +N+VW LV+KPEN VIGTKWVFRNKL+E G ++RNKARLVA+GY+Q+E
Sbjct: 461 IAMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEE 282
Query: 1176 GIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDE 1235
GIDY ET+APVARLE IR+L+++ N L+QMDVKSAFLNG I EEVYV QPPGFE
Sbjct: 281 GIDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIP 102
Query: 1236 RKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLE 1268
KP HV+KL+K+LYGLKQAPRAWYER+S+FLLE
Sbjct: 101 DKPTHVYKLQKALYGLKQAPRAWYERISNFLLE 3
>TC232995
Length = 1009
Score = 226 bits (575), Expect = 8e-59
Identities = 112/173 (64%), Positives = 133/173 (76%)
Frame = +2
Query: 1226 VHQPPGFEDERKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTY 1285
V QPPGFE KP+HV+KL+K+LYGLKQAPRAWYERLS+FLLE EF RGKVDTTLF K
Sbjct: 2 VEQPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRK 181
Query: 1286 KDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYI 1345
+DIL+VQIYVDDIIFGS N SLCKEFS MQ+EFEMSMMGELKYFLG+Q+ QT G +I
Sbjct: 182 HNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFI 361
Query: 1346 HQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLL 1398
+QSKY KEL+K+F M + TPM C L+K++ + K YR IG ++
Sbjct: 362 NQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVV 520
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 216 bits (551), Expect = 5e-56
Identities = 121/247 (48%), Positives = 157/247 (62%), Gaps = 2/247 (0%)
Frame = +3
Query: 1231 GFEDERKPDHVFKLKKSL--YGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDD 1288
GFED+ +P HVF + L G+K ++ S ++ K+
Sbjct: 330 GFEDKERPCHVFMV*NKL*ELGMKG*VHF*FQMDSPEE*RTPHYSERLK--------KET 485
Query: 1289 ILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQS 1348
LI+ IYVDDIIFG+ ++ +CKEF E+M+ FE SM GELK+ LG+Q+ Q G +IHQ
Sbjct: 486 FLIIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQE 665
Query: 1349 KYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTASRPDIL 1408
KYTK LK+F M E+ TPMH + I++K++K K Y GMI SL YLT+SRPDI+
Sbjct: 666 KYTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIV 845
Query: 1409 FSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTE 1468
F V LCARFQS P+ +H+TAVKRILRYL GTTN L +KK SE+ L GYCD +AGD+ E
Sbjct: 846 FVVCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGDKVE 1025
Query: 1469 RKSTFGN 1475
RKST N
Sbjct: 1026 RKSTSRN 1046
>TC213445
Length = 705
Score = 122 bits (305), Expect(2) = 2e-47
Identities = 57/98 (58%), Positives = 76/98 (77%)
Frame = +1
Query: 1466 RTERKSTFGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQI 1525
+T+R+ST C F+GS LVSW SK+Q+++ LSTAEAEYISA Q+ WM+ QL DY +
Sbjct: 400 KTDRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYGL 579
Query: 1526 LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIR 1563
+IPI CDNT+AI+LSKN IL+SR KHIE+++HF+R
Sbjct: 580 KLDHIPIRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693
Score = 87.4 bits (215), Expect(2) = 2e-47
Identities = 40/68 (58%), Positives = 51/68 (74%)
Frame = +2
Query: 1393 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 1452
MI S LYL+ SRP I+FSV +C R+Q++P+E+HL+ +KRI+RYL G NLGL Y K S Y
Sbjct: 197 MIESFLYLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSSY 376
Query: 1453 KLSGYCDA 1460
L GY DA
Sbjct: 377 NLVGYSDA 400
>BM143109
Length = 415
Score = 172 bits (437), Expect = 8e-43
Identities = 86/133 (64%), Positives = 102/133 (76%)
Frame = +1
Query: 1228 QPPGFEDERKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKD 1287
QPP ++ KP+HVFKLKK LYGLKQA RAWYE LS FLL+ F +GKVDT LF +
Sbjct: 4 QPPVRKNSEKPNHVFKLKKVLYGLKQALRAWYELLSKFLLDKGFSKGKVDTNLFI*KKLN 183
Query: 1288 DILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQ 1347
DIL+VQIYVDDIIFGS N SLCK+FS+ MQ EFEMSMM EL +FLG+Q+ QT G +I Q
Sbjct: 184 DILLVQIYVDDIIFGSTNDSLCKKFSQDMQNEFEMSMMRELNFFLGLQIKQTKNGIFISQ 363
Query: 1348 SKYTKELLKKFNM 1360
SKY K+L+ +F M
Sbjct: 364 SKYCKDLIHRFGM 402
>AI959950
Length = 466
Score = 170 bits (430), Expect(2) = 6e-42
Identities = 86/130 (66%), Positives = 103/130 (79%)
Frame = -1
Query: 1117 AMEEELNQFSKNDVWSLVKKPENVHVIGTKWVFRNKLNEKGEVVRNKARLVAQGYSQQEG 1176
AM+EEL+QF KN+V LVK P+ V+G KW+F NKL+E G+VVR KARLVA+GYSQQEG
Sbjct: 391 AMQEELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQEG 212
Query: 1177 IDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDER 1236
IDY +TFA VARLE I +L+SF+ N+ L+QMDVKSAFLNG I +EVYV QPPGFE+E
Sbjct: 211 IDYPKTFALVARLEVICILLSFATYSNMKLYQMDVKSAFLNGLIQKEVYVEQPPGFENET 32
Query: 1237 KPDHVFKLKK 1246
HVFKL K
Sbjct: 31 LHQHVFKLNK 2
Score = 21.2 bits (43), Expect(2) = 6e-42
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -2
Query: 1096 LVSLIEPKSIDEALQD 1111
L+ ++PK IDEA++D
Sbjct: 453 LIFEMKPKHIDEAIKD 406
>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
partial (7%)
Length = 336
Score = 159 bits (403), Expect = 7e-39
Identities = 74/111 (66%), Positives = 94/111 (84%)
Frame = +3
Query: 1101 EPKSIDEALQDKEWILAMEEELNQFSKNDVWSLVKKPENVHVIGTKWVFRNKLNEKGEVV 1160
EPK+I EA+ D WI+ M+EELNQF +N+VW LV+KPEN VIGTKWVFRNKL+E G ++
Sbjct: 3 EPKNIKEAIVDDNWIIVMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIII 182
Query: 1161 RNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDV 1211
RNKARLVA+GY+Q+EGIDY ET+APVARLEAIR+L++++ N L+QMDV
Sbjct: 183 RNKARLVAKGYNQEEGIDYEETYAPVARLEAIRMLLAYASIMNFKLYQMDV 335
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 152 bits (385), Expect = 9e-37
Identities = 80/184 (43%), Positives = 121/184 (65%), Gaps = 4/184 (2%)
Frame = +1
Query: 1390 YRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMY--- 1446
+R +IGSL YL SRP+I F+V L +RF PR +H+ A KR+LR +KGT G+++
Sbjct: 22 FRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVLFPFK 201
Query: 1447 KKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQSTIALSTAEAEYISA 1506
K+ + L GY D+D+ D + KST G V+ +SK+Q IALST EAEY++A
Sbjct: 202 AKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAEYVAA 381
Query: 1507 AICSTQMLWMKHQLEDYQILESN-IPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDY 1565
++ + Q +WM + LE+ ++ E + + DN +AI+L+K+P LH R+KHIE+++H+IRD
Sbjct: 382 SLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHYIRDQ 561
Query: 1566 VQKG 1569
V KG
Sbjct: 562 VSKG 573
>CO983516
Length = 724
Score = 152 bits (385), Expect = 9e-37
Identities = 73/120 (60%), Positives = 92/120 (75%)
Frame = +2
Query: 1183 FAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDERKPDHVF 1242
F PVARLE+IRLL+ + L+QMDVKSAFLNGY++EEVYV QP GF D PDHV+
Sbjct: 365 FHPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFIDPTHPDHVY 544
Query: 1243 KLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFG 1302
+LKK+LYGLKQAPRAWYERL+ L + + +G +D TLF K ++++I QIYVDDI+FG
Sbjct: 545 RLKKALYGLKQAPRAWYERLTELLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFG 724
>AI855982
Length = 484
Score = 148 bits (373), Expect = 2e-35
Identities = 78/165 (47%), Positives = 110/165 (66%)
Frame = +2
Query: 1065 PKELILGNKDEPVRTRSAFRPSEETLLSLKGLVSLIEPKSIDEALQDKEWILAMEEELNQ 1124
P + I+G+ + V TR + + L + VS+IEPK+I EA+ D WI+AM+EELNQ
Sbjct: 2 PLDNIIGDISKGVTTRHSLKD----LCNNMAFVSMIEPKNIKEAIVDDNWIIAMQEELNQ 169
Query: 1125 FSKNDVWSLVKKPENVHVIGTKWVFRNKLNEKGEVVRNKARLVAQGYSQQEGIDYTETFA 1184
F +N+VW LV+KP+N VI TKWVFRNKL+E ++ +KARLVA+GY+Q +G+DY T+A
Sbjct: 170 FERNNVWKLVEKPDNYPVI*TKWVFRNKLDEHRIIIIHKARLVAEGYNQVDGLDYEHTYA 349
Query: 1185 PVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQP 1229
+ARL I + +S+ N L+ SA L+G + EVYV QP
Sbjct: 350 SIARL*VIIMPLSYVYIMNSTLYHYACVSALLHGLLLHEVYVDQP 484
>AI966222
Length = 430
Score = 110 bits (276), Expect(2) = 2e-29
Identities = 49/87 (56%), Positives = 62/87 (70%)
Frame = +1
Query: 894 EMARTMLQETGMAKHFWAEAVNTACYIPNRISVRPILNKTPYELWKNIKPNISYFHPFGC 953
EMART L + KHF AE +N CY+ N+I +RPIL +TPYELWK KPNISYF+PF C
Sbjct: 1 EMARTTLNDNLTPKHF*AEVMNIVCYLQNKIYIRPILKRTPYELWKGRKPNISYFYPFRC 180
Query: 954 VCYVLNTKDRLHKFDAKSSKCLLLGYS 980
C+++NTKD L K D+KS + + YS
Sbjct: 181 KCFIINTKDNLGKIDSKSDCGIFIAYS 261
Score = 38.9 bits (89), Expect(2) = 2e-29
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +2
Query: 983 SKGFRFYNTDAKTIEESIHVRF-DDKLDSDQSKLVEKFADLSIN 1025
SK FR YN+ IEE+IH+RF +K + + +L E FADL ++
Sbjct: 269 SKAFRVYNSGTLVIEEAIHIRFGKNKPNKELLELDESFADLRLD 400
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 128 bits (322), Expect = 2e-29
Identities = 62/130 (47%), Positives = 90/130 (68%)
Frame = -2
Query: 1134 VKKPENVHVIGTKWVFRNKLNEKGEVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIR 1193
V P +G +WV+ K+ GEV R KARLVA+GY+Q GIDY +TF+PVA+L +R
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 1194 LLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDERKPDHVFKLKKSLYGLKQ 1253
L ++ + + LHQ+D+K+AFL+G + E++Y+ QPPGF + + V KL +SLYGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 1254 APRAWYERLS 1263
+PRAW+ + S
Sbjct: 46 SPRAWFGKFS 17
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 125 bits (315), Expect = 1e-28
Identities = 56/113 (49%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Frame = +2
Query: 1453 KLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 1512
+LSGYCDAD+AG +R+ST G C F+G NLVSW SK+Q+ +A S+AEAEY S A+ + +
Sbjct: 14 QLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCE 193
Query: 1513 MLWMKHQLEDYQILES-NIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRD 1564
++W+K L++ + E + +YCDN AA+ ++ NP+ H R KHIE+ HFIR+
Sbjct: 194 LMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIRE 352
>CO982036
Length = 674
Score = 124 bits (310), Expect = 4e-28
Identities = 75/212 (35%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Frame = -2
Query: 1285 YKDDILIVQ--IYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEG 1342
YK IL V +YVD II GS+ +L + + + + F + ++G+L YF+ I+V P+
Sbjct: 673 YKTHILTVYLLVYVDIIITGSSC-TLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPDL 497
Query: 1343 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTA 1402
+ ++ + +K ++ +PM TC L K D YR ++G+L Y T
Sbjct: 496 LFSLRTSIFEIFCRKPR*QAQPIS-SPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTV 320
Query: 1403 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYK---KTSEYKLSGYCD 1459
RP+I F+V+ +F S+P ++H T VKRILRYLKG+ + GL K + + G+CD
Sbjct: 319 IRPEISFAVNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCD 140
Query: 1460 ADYAGDRTERKSTFGNCQFLGSNLVSWASKRQ 1491
AD+A +++ST G FLG NL+SW +Q
Sbjct: 139 ADWASAVDDKRSTSGAAVFLGPNLISWWXXKQ 44
>BG508993
Length = 374
Score = 119 bits (297), Expect = 1e-26
Identities = 53/123 (43%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Frame = +1
Query: 1437 KGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQSTIAL 1496
KGT + GL Y ++ YKL G+CD+D+AGD +RKST G F+G + +W+SK+Q + L
Sbjct: 4 KGTIDFGLFYSPSNNYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIVTL 183
Query: 1497 STAEAEYISAAICSTQMLWMKHQLEDYQILE-SNIPIYCDNTAAISLSKNPILHSRAKHI 1555
T EAEY++A C+ +W++ LE+ Q+L+ + IY DN +A L+KN + H R+KHI
Sbjct: 184 FTCEAEYVAATSCTCHAIWLRRLLEELQLLQKESTKIYVDNRSAQELAKNSVFHERSKHI 363
Query: 1556 EVK 1558
+ +
Sbjct: 364 DTR 372
>BU549979
Length = 615
Score = 117 bits (292), Expect = 5e-26
Identities = 58/156 (37%), Positives = 98/156 (62%), Gaps = 3/156 (1%)
Frame = -1
Query: 1416 RFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGN 1475
R+QS+P H K+++RYL+GT + LMYK+T+ ++ GY D+D+AG R+ST G
Sbjct: 606 RYQSNPGIDHWKTAKKVMRYLQGTKDYMLMYKQTNCLEVIGYSDSDFAGCVDSRRSTSGY 427
Query: 1476 CQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILES---NIPI 1532
L +VSW S +Q+ IA ST E E++ ++ +W+K + ++++S + +
Sbjct: 426 IFMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVVDSISRPLKL 247
Query: 1533 YCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQK 1568
YCDN AA+ ++KN +R+KHI++KY IR+ V++
Sbjct: 246 YCDNFAAVFMAKNNKSGNRSKHIDIKYLVIRERVKE 139
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 114 bits (285), Expect = 3e-25
Identities = 56/134 (41%), Positives = 82/134 (60%)
Frame = +3
Query: 1096 LVSLIEPKSIDEALQDKEWILAMEEELNQFSKNDVWSLVKKPENVHVIGTKWVFRNKLNE 1155
L SL P +I EAL W AM +E+ N W LV P +G +WV+ K+
Sbjct: 3 LSSLTVPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGP 182
Query: 1156 KGEVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAF 1215
G+V R KARLVA+GY+Q GI+Y +TF+PV L +RL ++ + + LHQ+D+K+AF
Sbjct: 183 NGKVDRLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAF 362
Query: 1216 LNGYISEEVYVHQP 1229
L+G + E++Y+ QP
Sbjct: 363 LHGDLEEDIYMEQP 404
>BI321712
Length = 399
Score = 110 bits (274), Expect = 6e-24
Identities = 57/124 (45%), Positives = 79/124 (62%)
Frame = -3
Query: 1294 IYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKE 1353
+YVDD+IF N S+ +EF + M EFEM+ MG + Y+LGI+V Q +G +I Q Y KE
Sbjct: 379 LYVDDLIFTGNNPSMFEEFKKDMSNEFEMTDMGLMAYYLGIEVKQEDKGIFITQEGYAKE 200
Query: 1354 LLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTASRPDILFSVHL 1413
+LKKF M ++ TPM L K +K V LY+ +IGSL YLT +RPDIL+ V +
Sbjct: 199 VLKKFKMDDANPVGTPMECGSKLSKHEKGENVDPTLYKSLIGSLRYLTCTRPDILYVVGV 20
Query: 1414 CARF 1417
+R+
Sbjct: 19 VSRY 8
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.332 0.142 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,902,217
Number of Sequences: 63676
Number of extensions: 927521
Number of successful extensions: 6042
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 5860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5986
length of query: 1572
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1462
effective length of database: 5,635,272
effective search space: 8238767664
effective search space used: 8238767664
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0359.3