BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0359.2
(453 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 499 e-141
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 497 e-141
TC232995 225 3e-59
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 210 9e-55
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 197 8e-51
TC213445 122 2e-48
BM143109 171 6e-43
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 149 2e-36
AI959950 148 4e-36
CO983516 146 2e-35
CO982036 125 5e-29
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 125 5e-29
BG508993 120 1e-27
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 119 2e-27
BU549979 114 7e-26
BI321712 109 3e-24
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl... 108 4e-24
AW185460 106 2e-23
TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (F... 105 3e-23
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti... 99 3e-21
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 499 bits (1284), Expect = e-141
Identities = 234/435 (53%), Positives = 324/435 (73%)
Frame = +1
Query: 17 DLTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEA 76
+L +PE +VIGTKW+F+NK NE+G + RNK RLVAQGY+Q EG+D+ ETFAPVARLE+
Sbjct: 3292 ELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLES 3471
Query: 77 IILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGL 136
I LL+ + L+QMDVKSAFLNGY+++EVYV QP GF D PDHV++LKK+LYGL
Sbjct: 3472 IRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGL 3651
Query: 137 KQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKE 196
KQAPRAWYERL+ FL + + +G +D TLF K ++++I +IYVDDI+FG + + +
Sbjct: 3652 KQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRH 3831
Query: 197 FSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMH 256
F + MQ+EFEMS++GEL YFLG+QV Q + ++ QS+Y K ++KKF M ++ +TP
Sbjct: 3832 FVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAP 4011
Query: 257 PTCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKR 316
L K++ V Q LYR MIGSLLYLTASRPDI ++V +CAR+Q++P+ +HLT VKR
Sbjct: 4012 THLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKR 4191
Query: 317 ILRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQ 376
IL+Y+ GT + G+MY S L GYCDAD+AG +RKST G C +LG+NL+SW SK+Q
Sbjct: 4192 ILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQ 4371
Query: 377 STIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSR 436
+ ++LSTAEAEYI+A +Q++WMK L++Y + + + +YCDN +AI++SKNP+ HSR
Sbjct: 4372 NCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSR 4551
Query: 437 AKHIEVKYHFIRGYV 451
KHI++++H+IR V
Sbjct: 4552 TKHIDIRHHYIRDLV 4596
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 497 bits (1280), Expect = e-141
Identities = 233/435 (53%), Positives = 323/435 (73%)
Frame = +1
Query: 17 DLTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEA 76
+L +PE +VIGTKW+F+NK NE+G + RNK RLVAQGY+Q EG+D+ ETFAPVARLE+
Sbjct: 3295 ELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLES 3474
Query: 77 IILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGL 136
I LL+ + L+QMDVKSAFLNGY+++E YV QP GF D PDHV++LKK+LYGL
Sbjct: 3475 IRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGL 3654
Query: 137 KQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKE 196
KQAPRAWYERL+ FL + + +G +D TLF K ++++I +IYVDDI+FG + + +
Sbjct: 3655 KQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRH 3834
Query: 197 FSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMH 256
F + MQ+EFEMS++GEL YFLG+QV Q + ++ QSKY K ++KKF M ++ +TP
Sbjct: 3835 FVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAP 4014
Query: 257 PTCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKR 316
L K++ V Q LYR MIGSLLYLTASRPDI ++V +CAR+Q++P+ +HL VKR
Sbjct: 4015 THLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKR 4194
Query: 317 ILRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQ 376
IL+Y+ GT + G+MY S+ L GYCDAD+AG +RKST G C +LG+NL+SW SK+Q
Sbjct: 4195 ILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQ 4374
Query: 377 STIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSR 436
+ ++LSTAEAEYI+A +Q++WMK L++Y + + + +YCDN +AI++SKNP+ HSR
Sbjct: 4375 NCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSR 4554
Query: 437 AKHIEVKYHFIRGYV 451
KHI++++H+IR V
Sbjct: 4555 TKHIDIRHHYIRDLV 4599
>TC232995
Length = 1009
Score = 225 bits (574), Expect = 3e-59
Identities = 111/173 (64%), Positives = 134/173 (77%)
Frame = +2
Query: 111 VHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTY 170
V QPPGFE KP+HV+KL+K+LYGLKQAPRAWYERLS+FLLE EF RGKVDTTLF K
Sbjct: 2 VEQPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRK 181
Query: 171 KDDILIVKIYVDDIIFGSANQSLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYI 230
+DIL+V+IYVDDIIFGS N SLCKEFS MQ+EFEMSMMGELKYFLG+Q+ QT G +I
Sbjct: 182 HNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFI 361
Query: 231 HQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDTSGKVCQKLYRGMIGSLL 283
+QSKY KEL+K+F M + TPM C L+K+++ + K YR IG ++
Sbjct: 362 NQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVV 520
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 210 bits (535), Expect = 9e-55
Identities = 118/247 (47%), Positives = 156/247 (62%), Gaps = 2/247 (0%)
Frame = +3
Query: 116 GFEDEKKPDHVFKLKKSL--YGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDD 173
GFED+++P HVF + L G+K ++ S ++ K+
Sbjct: 330 GFEDKERPCHVFMV*NKL*ELGMKG*VHF*FQMDSPEE*RTPHYSERLK--------KET 485
Query: 174 ILIVKIYVDDIIFGSANQSLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQS 233
LI+ IYVDDIIFG+ ++ +CKEF ++M+ FE SM GELK+ LG+Q+ Q G +IHQ
Sbjct: 486 FLIIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQE 665
Query: 234 KYTKELLKKFNMLESTVAKTPMHPTCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDIL 293
KYTK LK+F M E+ TPMH + I++K++ K Y GMI SL YLT+SRPDI+
Sbjct: 666 KYTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIV 845
Query: 294 FSVHLCARFQSDPRETHLTAVKRILRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTE 353
F V LCARFQS P+ +H+TAVKRILRYL GT N L +KK SE+ L GYCD +AGD+ E
Sbjct: 846 FVVCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGDKVE 1025
Query: 354 RKSTFGN 360
RKST N
Sbjct: 1026RKSTSRN 1046
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 197 bits (501), Expect = 8e-51
Identities = 95/136 (69%), Positives = 114/136 (82%)
Frame = -3
Query: 18 LTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAI 77
L +KPEN VIGTKWVFRNKL+E G ++RNK RLVA+GY+Q+EGIDY ET+APVARLE I
Sbjct: 410 LVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEGIDYEETYAPVARLEVI 231
Query: 78 ILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLK 137
+L+++ N L+QMDVKSAFLNG I +EVYV QPPGFE KP HV+KL+K+LYGLK
Sbjct: 230 RMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPDKPTHVYKLQKALYGLK 51
Query: 138 QAPRAWYERLSSFLLE 153
QAPRAWYER+S+FLLE
Sbjct: 50 QAPRAWYERISNFLLE 3
>TC213445
Length = 705
Score = 122 bits (305), Expect(2) = 2e-48
Identities = 57/98 (58%), Positives = 76/98 (77%)
Frame = +1
Query: 351 RTERKSTFGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQI 410
+T+R+ST C F+GS LVSW SK+Q+++ LSTAEAEYISA Q+ WM+ QL DY +
Sbjct: 400 KTDRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYGL 579
Query: 411 LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIR 448
+IPI CDNT+AI+LSKN IL+SR KHIE+++HF+R
Sbjct: 580 KLDHIPIRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693
Score = 89.4 bits (220), Expect(2) = 2e-48
Identities = 41/68 (60%), Positives = 52/68 (76%)
Frame = +2
Query: 278 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTINLGLMYKKTSEY 337
MI S LYL+ SRP I+FSV +C R+Q++P+E+HL+ +KRI+RYL G INLGL Y K S Y
Sbjct: 197 MIESFLYLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSSY 376
Query: 338 KLSGYCDA 345
L GY DA
Sbjct: 377 NLVGYSDA 400
>BM143109
Length = 415
Score = 171 bits (433), Expect = 6e-43
Identities = 85/133 (63%), Positives = 103/133 (76%)
Frame = +1
Query: 113 QPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKD 172
QPP ++ +KP+HVFKLKK LYGLKQA RAWYE LS FLL+ F +GKVDT LF +
Sbjct: 4 QPPVRKNSEKPNHVFKLKKVLYGLKQALRAWYELLSKFLLDKGFSKGKVDTNLFI*KKLN 183
Query: 173 DILIVKIYVDDIIFGSANQSLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQ 232
DIL+V+IYVDDIIFGS N SLCK+FS+ MQ EFEMSMM EL +FLG+Q+ QT G +I Q
Sbjct: 184 DILLVQIYVDDIIFGSTNDSLCKKFSQDMQNEFEMSMMRELNFFLGLQIKQTKNGIFISQ 363
Query: 233 SKYTKELLKKFNM 245
SKY K+L+ +F M
Sbjct: 364 SKYCKDLIHRFGM 402
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein,
partial (7%)
Length = 804
Score = 149 bits (377), Expect = 2e-36
Identities = 79/183 (43%), Positives = 120/183 (65%), Gaps = 4/183 (2%)
Frame = +1
Query: 275 YRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTINLGLMY--- 331
+R +IGSL YL SRP+I F+V L +RF PR +H+ A KR+LR +KGTI G+++
Sbjct: 22 FRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVLFPFK 201
Query: 332 KKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQSTIALSTAEAEYISA 391
K+ + L GY D+D+ D + KST G V+ +SK+Q IALST EAEY++A
Sbjct: 202 AKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAEYVAA 381
Query: 392 AICSTQMLWMKHQLEDYQILESN-IPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRGY 450
++ + Q +WM + LE+ ++ E + + DN +AI+L+K+P LH R+KHIE+++H+IR
Sbjct: 382 SLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHYIRDQ 561
Query: 451 VQK 453
V K
Sbjct: 562 VSK 570
>AI959950
Length = 466
Score = 148 bits (374), Expect = 4e-36
Identities = 75/114 (65%), Positives = 87/114 (75%)
Frame = -1
Query: 18 LTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAI 77
L K P+ V+G KW+F NKL+E G VVR K RLVA+GYSQQEGIDY +TFA VARLE I
Sbjct: 343 LVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQEGIDYPKTFALVARLEVI 164
Query: 78 ILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKK 131
+L+SF+ N+ L+QMDVKSAFLNG I KEVYV QPPGFE+E HVFKL K
Sbjct: 163 CILLSFATYSNMKLYQMDVKSAFLNGLIQKEVYVEQPPGFENETLHQHVFKLNK 2
>CO983516
Length = 724
Score = 146 bits (368), Expect = 2e-35
Identities = 70/120 (58%), Positives = 91/120 (75%)
Frame = +2
Query: 68 FAPVARLEAIILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVF 127
F PVARLE+I LL+ + L+QMDVKSAFLNGY+++EVYV QP GF D PDHV+
Sbjct: 365 FHPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFIDPTHPDHVY 544
Query: 128 KLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFG 187
+LKK+LYGLKQAPRAWYERL+ L + + +G +D TLF K ++++I +IYVDDI+FG
Sbjct: 545 RLKKALYGLKQAPRAWYERLTELLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFG 724
>CO982036
Length = 674
Score = 125 bits (313), Expect = 5e-29
Identities = 75/212 (35%), Positives = 120/212 (56%), Gaps = 5/212 (2%)
Frame = -2
Query: 170 YKDDILIVK--IYVDDIIFGSANQSLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQTPEG 227
YK IL V +YVD II GS+ +L + + + + F + ++G+L YF+ I+V P+
Sbjct: 673 YKTHILTVYLLVYVDIIITGSSC-TLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPDL 497
Query: 228 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDTSGKVCQKLYRGMIGSLLYLTA 287
+ ++ + +K ++ +PM TC L K D+ YR ++G+L Y T
Sbjct: 496 LFSLRTSIFEIFCRKPR*QAQPIS-SPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTV 320
Query: 288 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTINLGLMYK---KTSEYKLSGYCD 344
RP+I F+V+ +F S+P ++H T VKRILRYLKG+++ GL K + + G+CD
Sbjct: 319 IRPEISFAVNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCD 140
Query: 345 ADYAGDRTERKSTFGNCQFLGSNLVSWASKRQ 376
AD+A +++ST G FLG NL+SW +Q
Sbjct: 139 ADWASAVDDKRSTSGAAVFLGPNLISWWXXKQ 44
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment),
partial (30%)
Length = 687
Score = 125 bits (313), Expect = 5e-29
Identities = 56/112 (50%), Positives = 81/112 (72%), Gaps = 1/112 (0%)
Frame = +2
Query: 338 KLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 397
+LSGYCDAD+AG +R+ST G C F+G NLVSW SK+Q+ +A S+AEAEY S A+ + +
Sbjct: 14 QLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCE 193
Query: 398 MLWMKHQLEDYQILES-NIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIR 448
++W+K L++ + E + +YCDN AA+ ++ NP+ H R KHIE+ HFIR
Sbjct: 194 LMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIR 349
>BG508993
Length = 374
Score = 120 bits (302), Expect = 1e-27
Identities = 54/123 (43%), Positives = 83/123 (66%), Gaps = 1/123 (0%)
Frame = +1
Query: 322 KGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQSTIAL 381
KGTI+ GL Y ++ YKL G+CD+D+AGD +RKST G F+G + +W+SK+Q + L
Sbjct: 4 KGTIDFGLFYSPSNNYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIVTL 183
Query: 382 STAEAEYISAAICSTQMLWMKHQLEDYQILE-SNIPIYCDNTAAISLSKNPILHSRAKHI 440
T EAEY++A C+ +W++ LE+ Q+L+ + IY DN +A L+KN + H R+KHI
Sbjct: 184 FTCEAEYVAATSCTCHAIWLRRLLEELQLLQKESTKIYVDNRSAQELAKNSVFHERSKHI 363
Query: 441 EVK 443
+ +
Sbjct: 364 DTR 372
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 119 bits (299), Expect = 2e-27
Identities = 56/121 (46%), Positives = 86/121 (70%)
Frame = -2
Query: 28 IGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAIILLISFSLNH 87
+G +WV+ K+ G+V R K RLVA+GY+Q GIDY +TF+PVA+L + L ++ +
Sbjct: 379 VGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVRLFLAMAAIC 200
Query: 88 NIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERL 147
+ LHQ+D+K+AFL+G + +++Y+ QPPGF + + V KL +SLYGLKQ+PRAW+ +
Sbjct: 199 HWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQSPRAWFGKF 20
Query: 148 S 148
S
Sbjct: 19 S 17
>BU549979
Length = 615
Score = 114 bits (286), Expect = 7e-26
Identities = 58/156 (37%), Positives = 97/156 (62%), Gaps = 3/156 (1%)
Frame = -1
Query: 301 RFQSDPRETHLTAVKRILRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGN 360
R+QS+P H K+++RYL+GT + LMYK+T+ ++ GY D+D+AG R+ST G
Sbjct: 606 RYQSNPGIDHWKTAKKVMRYLQGTKDYMLMYKQTNCLEVIGYSDSDFAGCVDSRRSTSGY 427
Query: 361 CQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILES---NIPI 417
L +VSW S +Q+ IA ST E E++ ++ +W+K + ++++S + +
Sbjct: 426 IFMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVVDSISRPLKL 247
Query: 418 YCDNTAAISLSKNPILHSRAKHIEVKYHFIRGYVQK 453
YCDN AA+ ++KN +R+KHI++KY IR V++
Sbjct: 246 YCDNFAAVFMAKNNKSGNRSKHIDIKYLVIRERVKE 139
>BI321712
Length = 399
Score = 109 bits (272), Expect = 3e-24
Identities = 57/124 (45%), Positives = 78/124 (61%)
Frame = -3
Query: 179 IYVDDIIFGSANQSLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKE 238
+YVDD+IF N S+ +EF K M EFEM+ MG + Y+LGI+V Q +G +I Q Y KE
Sbjct: 379 LYVDDLIFTGNNPSMFEEFKKDMSNEFEMTDMGLMAYYLGIEVKQEDKGIFITQEGYAKE 200
Query: 239 LLKKFNMLESTVAKTPMHPTCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHL 298
+LKKF M ++ TPM L K + V LY+ +IGSL YLT +RPDIL+ V +
Sbjct: 199 VLKKFKMDDANPVGTPMECGSKLSKHEKGENVDPTLYKSLIGSLRYLTCTRPDILYVVGV 20
Query: 299 CARF 302
+R+
Sbjct: 19 VSRY 8
>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
partial (7%)
Length = 336
Score = 108 bits (271), Expect = 4e-24
Identities = 52/79 (65%), Positives = 66/79 (82%)
Frame = +3
Query: 18 LTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAI 77
L +KPEN VIGTKWVFRNKL+E G ++RNK RLVA+GY+Q+EGIDY ET+APVARLEAI
Sbjct: 99 LVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEGIDYEETYAPVARLEAI 278
Query: 78 ILLISFSLNHNIILHQMDV 96
+L++++ N L+QMDV
Sbjct: 279 RMLLAYASIMNFKLYQMDV 335
>AW185460
Length = 411
Score = 106 bits (265), Expect = 2e-23
Identities = 52/106 (49%), Positives = 71/106 (66%)
Frame = +2
Query: 287 ASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTINLGLMYKKTSEYKLSGYCDAD 346
A+RPDI+++ L +RF P + H A KRILRYL+GT G+ Y + +L GY D+D
Sbjct: 89 ATRPDIMYATSLLSRFMQSPSQIHFGAGKRILRYLQGTKAFGIWYTTETNSELLGYTDSD 268
Query: 347 YAGDRTERKSTFGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAA 392
+AG + KST G LGS + SWASK+Q+T+A STAEAEY++ A
Sbjct: 269 WAGSTDDMKSTSGYAFSLGSGMFSWASKKQATVAQSTAEAEYVAVA 406
>TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (Fragment),
partial (16%)
Length = 562
Score = 105 bits (263), Expect = 3e-23
Identities = 54/122 (44%), Positives = 76/122 (62%)
Frame = +1
Query: 175 LIVKIYVDDIIFGSANQSLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSK 234
LIV +YVDD++ + L +EF + M FEM+ +G + YFLGI++ Q+ I Q K
Sbjct: 193 LIVSLYVDDLLVTRDDARLVEEFKQEMMQAFEMTNLGLMTYFLGIEIKQSQNKVLICQRK 372
Query: 235 YTKELLKKFNMLESTVAKTPMHPTCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILF 294
Y KE+LKKF M E TPM+ K D + K+ + YR +IG L+YLTA+RPDILF
Sbjct: 373 YAKEILKKFQMEECKSVSTPMNQKEKFNKVDGADKIDEGYYRSLIGCLMYLTATRPDILF 552
Query: 295 SV 296
++
Sbjct: 553 AI 558
>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
Length = 558
Score = 99.4 bits (246), Expect = 3e-21
Identities = 65/182 (35%), Positives = 103/182 (55%), Gaps = 4/182 (2%)
Frame = +1
Query: 42 GDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAIILLISFSLNHNIILHQMDVKSAFL 101
G + + K RLVA+ Y+Q G DYT TF+PVA++ + LL S ++ + L +D K+AFL
Sbjct: 28 GTIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFL 207
Query: 102 NGYISKEVYVHQPPGFEDE-KKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV--- 157
+GY+ +EVY+ QP GF + + + V +L +S YGLKQ+PRAW FL +
Sbjct: 208 HGYLEEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAW-----PFLYCGAAIWYD 372
Query: 158 RGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEFSKMMQAEFEMSMMGELKYFL 217
+ D ++F + + +YVDDI ++Q + +F+ +G+L+YFL
Sbjct: 373 SHEADHSVFYCHSPQGCIYLIVYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRYFL 552
Query: 218 GI 219
GI
Sbjct: 553 GI 558
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.137 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,384,018
Number of Sequences: 63676
Number of extensions: 258407
Number of successful extensions: 1295
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of query: 453
length of database: 12,639,632
effective HSP length: 100
effective length of query: 353
effective length of database: 6,272,032
effective search space: 2214027296
effective search space used: 2214027296
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0359.2