TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0358.18
         (152 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC221794 homologue to UP|Q9FR59 (Q9FR59) Homeobox 1, partial (20%)     70  3e-13
TC223977 weakly similar to UP|Q9FJS2 (Q9FJS2) Homeobox protein, ...    59  9e-10
BM086134                                                               47  3e-06
TC229808 similar to UP|Q6K832 (Q6K832) Lipase class 3 protein-li...    28  2.2
TC232055 similar to UP|O49524 (O49524) Pherophorin - like protei...    27  3.8
BU544139                                                               27  4.9
BF066639                                                               26  6.4
CO984513                                                               26  6.4

>TC221794 homologue to UP|Q9FR59 (Q9FR59) Homeobox 1, partial (20%)
          Length = 501

 Score = 70.5 bits (171), Expect = 3e-13
 Identities = 32/51 (62%), Positives = 39/51 (75%)
 Frame = +3

Query: 1   ATCTTCGGLTSLGEMSYDEQLMKLENARLREAIERISGIVAKYAGKSTTSY 51
           A+C  CGG T++GEMS+DE  ++LENARLRE I+RIS I AKY GK   SY
Sbjct: 333 ASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSY 485


>TC223977 weakly similar to UP|Q9FJS2 (Q9FJS2) Homeobox protein, partial (7%)
          Length = 447

 Score = 58.9 bits (141), Expect = 9e-10
 Identities = 38/141 (26%), Positives = 68/141 (47%), Gaps = 17/141 (12%)
 Frame = +2

Query: 19  EQLMKLENARLREAIERISGIVAKYAGKSTTSYSSLLSQNYNQMPSSSRAFDLGVGNYGG 78
           E  +++ENARLRE +ER+  +  +Y G+   + ++            + + DL +  Y  
Sbjct: 2   EHQLRIENARLREELERVCCLTTRYTGRPIQTMAA-------DPTLMAPSLDLDMNMYPR 160

Query: 79  DGNDLLRSS--------LPP---------ILADADKPIIVEVAVAAMEELVRLARVGHPL 121
             +D +           LPP         +L + +K + +E+A ++M ELV++ +   PL
Sbjct: 161 HFSDPIAPCTEMIPVPMLPPEASPFSEGGVLMEEEKSLALELAASSMAELVKMCQTNEPL 340

Query: 122 WVLSNNHNVETLNEEEYVREF 142
           W+ S+    E LN EE+ R F
Sbjct: 341 WIQSSEGEREVLNFEEHARMF 403


>BM086134 
          Length = 428

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 19/41 (46%), Positives = 28/41 (67%)
 Frame = +1

Query: 112 VRLARVGHPLWVLSNNHNVETLNEEEYVREFPRGTGSKPFG 152
           + +A++G PLW+ + +     LNE+EY+R FPRG G KP G
Sbjct: 1   IGMAQMGEPLWLTTLDGTSTMLNEDEYIRSFPRGIGPKPSG 123


>TC229808 similar to UP|Q6K832 (Q6K832) Lipase class 3 protein-like, partial
           (3%)
          Length = 1019

 Score = 27.7 bits (60), Expect = 2.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 40  VAKYAGKSTTSYSSLLSQNYNQMPSSSRAFDLGVGNYGGDGND 82
           +A+  G S T++ SLL++ +  M S S   +    + G DG+D
Sbjct: 174 IAEAYGSSETNFESLLTEEHLIMESMSDDDEYNSSSEGSDGDD 302


>TC232055 similar to UP|O49524 (O49524) Pherophorin - like protein, partial
           (7%)
          Length = 448

 Score = 26.9 bits (58), Expect = 3.8
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -2

Query: 37  SGIVAKYAGKSTTSYSSLLSQNYNQMPSSSRAFDLGVGNYGGDGNDLLRSSLPPILADAD 96
           SG +  +AG + T+++            ++ AFD G    GG G  +LRS  P    D D
Sbjct: 363 SGTLRTFAGATLTAFAG---GGGGGGGGAAAAFDAGFLGGGGGGGGILRSVSPEETLDGD 193


>BU544139 
          Length = 424

 Score = 26.6 bits (57), Expect = 4.9
 Identities = 15/45 (33%), Positives = 23/45 (50%), Gaps = 1/45 (2%)
 Frame = -3

Query: 104 AVAAMEELVRLARVGHPLW-VLSNNHNVETLNEEEYVREFPRGTG 147
           ++A + E  +L     PL+ ++ N HN+  LNE   V  F   TG
Sbjct: 146 SLAIVAEAQKLLMTRAPLYYIVCNLHNLSLLNENGKVNSFKNHTG 12


>BF066639 
          Length = 353

 Score = 26.2 bits (56), Expect = 6.4
 Identities = 15/55 (27%), Positives = 32/55 (57%), Gaps = 1/55 (1%)
 Frame = -2

Query: 38  GIVAKYAGKSTTSY-SSLLSQNYNQMPSSSRAFDLGVGNYGGDGNDLLRSSLPPI 91
           G+V ++  +S++   S++LS +   +  SS     GVG++  +G +L + + PP+
Sbjct: 268 GLVGQFLLRSSSIICSAILSSSSISVLRSSCLATCGVGSHSENGKELEQEASPPV 104


>CO984513 
          Length = 771

 Score = 26.2 bits (56), Expect = 6.4
 Identities = 15/39 (38%), Positives = 25/39 (63%), Gaps = 6/39 (15%)
 Frame = -2

Query: 63  PSSSRAFDLGV---GNYGGDGNDLLRSSL---PPILADA 95
           P+ S + DL +    ++GG GN+LL SS+   PP+L+ +
Sbjct: 389 PAESSSEDLNMFQTNDHGGGGNNLLLSSVQQQPPLLSSS 273


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.313    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,374,013
Number of Sequences: 63676
Number of extensions: 70101
Number of successful extensions: 259
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of query: 152
length of database: 12,639,632
effective HSP length: 89
effective length of query: 63
effective length of database: 6,972,468
effective search space: 439265484
effective search space used: 439265484
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)