TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0349b.2
         (400 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC231489 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F1...    30  2.5
TC229920 weakly similar to UP|O64855 (O64855) Expressed protein ...    28  5.6
TC211237 weakly similar to UP|Q8H3A4 (Q8H3A4) ABC transporter pe...    28  7.3
BU760638 weakly similar to GP|23237921|db contains ESTs D41667(S...    28  7.3
TC232193 weakly similar to UP|Q94AF3 (Q94AF3) AT4g28740/F16A16_1...    28  9.6

>TC231489 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F18_180
           {Arabidopsis thaliana;} , partial (22%)
          Length = 634

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 8/161 (4%)
 Frame = +3

Query: 6   MDPPEFDLEAYLEKSEREDTYILNRFRDRRNLILEDSAPRGRKHLSRDHAGANQRLI--- 62
           MDP  F  ++   K  + D+    R R R  L+LEDS      HL+   A   QR +   
Sbjct: 177 MDPNHFQHQS---KPIQFDSSPTKRAR-RDLLVLEDS------HLNPASAPQQQRRLWVK 326

Query: 63  ---DDYF--LNEPTYDDGIFRRRYRMQKHVFLRIVADLSSSDNYFTQRVDAAKKEGISPL 117
               D++   N P + +  FR  +RM K  F  I   L S+      + +   +E I   
Sbjct: 327 DRSKDWWQRCNSPDFPEEEFRLHFRMSKATFDMICQHLDSA----VTKKNTMLREAIPVR 494

Query: 118 AKCTTTMRMLANGVAADAVDEYIKIGETTTLECLRRFCKGI 158
            +    +  LA G     V +   +G +T  + +   C  I
Sbjct: 495 QRVAVCIWRLATGDPLREVSKRFGLGISTCHKLVLEVCSAI 617


>TC229920 weakly similar to UP|O64855 (O64855) Expressed protein
           (At2g44200/F6E13.34), partial (19%)
          Length = 1372

 Score = 28.5 bits (62), Expect = 5.6
 Identities = 15/28 (53%), Positives = 18/28 (63%)
 Frame = -1

Query: 231 *SLDLACLFWMSGNVELYKRSRPVTSV* 258
           *SL   CL W SG++ LY  S PV S+*
Sbjct: 631 *SLLFLCLCWCSGDLSLYFLSSPVPSL* 548


>TC211237 weakly similar to UP|Q8H3A4 (Q8H3A4) ABC transporter permease
           protein-like protein, partial (13%)
          Length = 655

 Score = 28.1 bits (61), Expect = 7.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 128 ANGVAADAVDEYIKIGETTTLECLRRFCKG 157
           ANGVA    ++Y+ + ET    CLR + +G
Sbjct: 65  ANGVALSKDEDYLVVCETWKYRCLRHWLEG 154


>BU760638 weakly similar to GP|23237921|db contains ESTs D41667(S4320)
           AU033165(S4320)~mucin-like protein, partial (27%)
          Length = 430

 Score = 28.1 bits (61), Expect = 7.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 128 ANGVAADAVDEYIKIGETTTLECLRRFCKG 157
           ANGVA    ++Y+ + ET    CLR + +G
Sbjct: 224 ANGVALSKDEDYLVVCETWKYRCLRHWLEG 313


>TC232193 weakly similar to UP|Q94AF3 (Q94AF3) AT4g28740/F16A16_150, partial
           (48%)
          Length = 760

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
 Frame = -2

Query: 131 VAADAVDEYIKIGE--------TTTLECLRRFCKGIIRLYEQEYLRAPTQEDLQRILHVN 182
           VA+ +V    K GE        T+T    R   KG +RL +     A   +   R + +N
Sbjct: 729 VASSSVSSNSKAGEFPSVTKGTTSTPLSKRLSVKGSLRLKDSVTKDAGPAQMTSRAIPLN 550

Query: 183 EMWGVPKHDREY*LRALRVEKLS*SMRRSIC 213
           E  G+         R+LR +KLS   RR+IC
Sbjct: 549 EFTGMIFFSST---RSLRFDKLSSLDRRAIC 466


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.345    0.152    0.506 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,301,721
Number of Sequences: 63676
Number of extensions: 287464
Number of successful extensions: 1961
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1961
length of query: 400
length of database: 12,639,632
effective HSP length: 99
effective length of query: 301
effective length of database: 6,335,708
effective search space: 1907048108
effective search space used: 1907048108
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 60 (27.7 bits)