BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0348.13
(381 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC216434 similar to UP|Q8GT65 (Q8GT65) Serpin-like protein (Frag... 299 2e-81
TC216435 similar to UP|Q8GT65 (Q8GT65) Serpin-like protein (Frag... 152 2e-37
TC216436 similar to UP|Q8GT65 (Q8GT65) Serpin-like protein (Frag... 149 2e-36
TC210783 weakly similar to UP|O14760 (O14760) Small intestinal m... 35 0.073
TC204325 similar to UP|NTF2_ARATH (Q9C7F5) Nuclear transport fac... 34 0.13
AW278013 similar to SP|P27484|GRP2 Glycine-rich protein 2. [Wood... 33 0.28
TC219715 30 1.8
TC225227 similar to GB|AAF02830.1|6056366|AC009894 phosphoglycer... 29 3.1
TC227315 similar to UP|Q9ZRP8 (Q9ZRP8) Delta-8 sphingolipid desa... 29 4.0
TC230818 similar to UP|Q9LDH9 (Q9LDH9) Gb|AAF34826.1 (MJM20.1 pr... 29 4.0
TC209693 similar to UP|Q8LGA2 (Q8LGA2) Seed maturation-like prot... 29 4.0
TC224715 homologue to UP|Q39882 (Q39882) Nodulin-26, partial (98%) 29 4.0
TC224025 weakly similar to UP|Q6HXC4 (Q6HXC4) Conserved domain p... 29 4.0
TC209225 similar to GB|CAC08342.1|10178284|ATF8L15 rev interacti... 29 4.0
TC225557 similar to UP|Q9XFM6 (Q9XFM6) Progesterone-binding prot... 28 5.3
TC232689 similar to UP|PME3_PHAVU (Q43111) Pectinesterase 3 prec... 28 5.3
TC226608 UP|PIN1_DIGLA (Q9LEK8) Peptidyl-prolyl cis-trans isomer... 28 5.3
TC210415 28 5.3
TC230446 weakly similar to UP|Q6V9S3 (Q6V9S3) RPE1 protein, part... 28 5.3
BE190821 homologue to GP|20160466|dbj B1046G12.17 {Oryza sativa ... 28 6.9
>TC216434 similar to UP|Q8GT65 (Q8GT65) Serpin-like protein (Fragment),
partial (96%)
Length = 1436
Score = 299 bits (765), Expect = 2e-81
Identities = 175/364 (48%), Positives = 235/364 (64%), Gaps = 1/364 (0%)
Frame = +1
Query: 16 SIHPCLSTLLLASWPPVQKAAHSTSFSPSSDLTPSTISTPSSLRGFPLCSPTKDAADADA 75
S+H LS + S P S S S+D S S ++ DA+ A
Sbjct: 118 SLHVVLSIIAAGSKGPTLDQLLSFLRSKSTDHLNSFASQLFAV-------VLSDASPAGG 276
Query: 76 HHLSFTNGMFVDKSVSLSYPFRLLLAYQYNASLASLDFKNRGDRVLHDVNSLIELQSNGH 135
LSF +G++V++S+SL F+ L++ Y A+LAS+DF+ + V ++VNS E ++NG
Sbjct: 277 PRLSFADGVWVEQSLSLLPSFKQLVSADYKATLASVDFQTKAVEVANEVNSWAEKETNGL 456
Query: 136 ITQLLPPGTITNLTRLIFANALRFQGLWKHKFDGP-RYEFPFDLLNGTSVKVPFMTIKKK 194
+ LLPPG++ + TRLIFANAL F+G W KFD ++ F LL+G S++VPFMT +K
Sbjct: 457 VKDLLPPGSVDSSTRLIFANALYFKGAWNEKFDSSITKDYDFHLLDGRSIRVPFMT-SRK 633
Query: 195 THYIRAFDAFKILRLPYKQGRDRKRRFSMCIFLPDASDGLSALVHKLSSEPGFLKGKLPR 254
+IRAFD FK+L LPYKQG D KR+F+M FLP+ DGL AL KL+SE GFL+ KLP
Sbjct: 634 NQFIRAFDGFKVLGLPYKQGED-KRQFTMYFFLPETKDGLLALAEKLASESGFLERKLPN 810
Query: 255 RKVRVDALQIPKFNISFTFEASNVLKEVGVVSPFSPMDACFTKMLEINSPSNNLCVESIF 314
K+ V +IP+F ISF FEASNVLKE+GVV PFS T+M++ ++ NL V IF
Sbjct: 811 NKLEVGDFRIPRFKISFGFEASNVLKELGVVLPFSV--GGLTEMVD-SAVGQNLFVSDIF 981
Query: 315 HKAFIEVNEKGTKATAASVGFAPVTQSARRPGPVINFIANHPFLFLIREDFTGTILFVGQ 374
HK+FIEVNE+GT+A AA+ A + I+F+A+HPFLFLIRED TGT+LF+GQ
Sbjct: 982 HKSFIEVNEEGTEAAAATA--ATIQFGCAMFPTEIDFVADHPFLFLIREDLTGTVLFIGQ 1155
Query: 375 VLNP 378
VLNP
Sbjct: 1156VLNP 1167
Score = 60.1 bits (144), Expect = 2e-09
Identities = 33/61 (54%), Positives = 36/61 (58%)
Frame = +2
Query: 7 KKIIKRRTSSIHPCLSTLLLASWPPVQKAAHSTSFSPSSDLTPSTISTPSSLRGFPLCSP 66
+K + RTS I C TL AS P +A HS SFSPSSD P ISTPS L P CSP
Sbjct: 77 RKKLGTRTSCIRRCRCTLF*ASSPLAPRAPHSISFSPSSDPNPPIISTPSPLSSSPSCSP 256
Query: 67 T 67
T
Sbjct: 257 T 259
>TC216435 similar to UP|Q8GT65 (Q8GT65) Serpin-like protein (Fragment),
partial (37%)
Length = 820
Score = 152 bits (385), Expect = 2e-37
Identities = 88/151 (58%), Positives = 110/151 (72%), Gaps = 1/151 (0%)
Frame = +2
Query: 232 DGLSALVHKLSSEPGFLKGKLPRRKVRVDALQIPKFNISFTFEASNVLKEVGVVSPFSPM 291
DGL AL KL+SE GFL+ KLP +KV V +IP+F ISF FE SNVLKE+GVV PFS
Sbjct: 11 DGLLALAEKLASESGFLERKLPNQKVEVGDFRIPRFKISFGFEVSNVLKELGVVLPFSV- 187
Query: 292 DACFTKMLEINSP-SNNLCVESIFHKAFIEVNEKGTKATAASVGFAPVTQSARRPGPVIN 350
T+M ++SP NLCV +IFHK+FIEVNE+GT+A AA+ + +SA P I+
Sbjct: 188 -GGLTEM--VDSPVGQNLCVSNIFHKSFIEVNEEGTEAAAATSATIRL-RSAMLP-TKID 352
Query: 351 FIANHPFLFLIREDFTGTILFVGQVLNPLDG 381
F+A+HPFLFLIRED TGT+LF+GQVL+P G
Sbjct: 353 FVADHPFLFLIREDLTGTVLFIGQVLDPRAG 445
>TC216436 similar to UP|Q8GT65 (Q8GT65) Serpin-like protein (Fragment),
partial (40%)
Length = 489
Score = 149 bits (377), Expect = 2e-36
Identities = 81/159 (50%), Positives = 109/159 (67%), Gaps = 1/159 (0%)
Frame = +2
Query: 96 FRLLLAYQYNASLASLDFKNRGDRVLHDVNSLIELQSNGHITQLLPPGTITNLTRLIFAN 155
F+ L+ QY A+LAS+DF+ + V ++VNS E ++NG + LLPPG++ N T+LIFAN
Sbjct: 17 FKQLVRAQYKATLASVDFQTKAVEVTNEVNSWAEKETNGLVKDLLPPGSVDNSTKLIFAN 196
Query: 156 ALRFQGLWKHKFDGP-RYEFPFDLLNGTSVKVPFMTIKKKTHYIRAFDAFKILRLPYKQG 214
AL +G W KFD + LLNG+SVKVPFMT KKK +I A ++FK+L L YKQG
Sbjct: 197 ALWCKGAWNEKFDASITKHYDLHLLNGSSVKVPFMTSKKK-QFIMA*NSFKVLGLSYKQG 373
Query: 215 RDRKRRFSMCIFLPDASDGLSALVHKLSSEPGFLKGKLP 253
D KR+F+M FLP+ DGL AL KL+ + GFL+ +LP
Sbjct: 374 ED-KRQFTMYFFLPETKDGLLALAEKLAFDSGFLERRLP 487
>TC210783 weakly similar to UP|O14760 (O14760) Small intestinal mucin MUC3
(Fragment), partial (5%)
Length = 735
Score = 34.7 bits (78), Expect = 0.073
Identities = 30/91 (32%), Positives = 38/91 (40%), Gaps = 8/91 (8%)
Frame = -3
Query: 16 SIHPCLSTLLLASWPPVQKAAHSTSFSPSSDLTPSTISTPSS-LRGFPLCSP-------T 67
S P S L S+ P + SF+PS+ LT T STPSS L F +P T
Sbjct: 682 SFTPSTSLSSLTSFTPSTSLSSLISFTPSTSLTSFTSSTPSSFLFSFASSTPSSLLSSFT 503
Query: 68 KDAADADAHHLSFTNGMFVDKSVSLSYPFRL 98
+ SFT F+ S + PF L
Sbjct: 502 SSTTSFLSSLASFTPSSFLSSFASSTTPFFL 410
>TC204325 similar to UP|NTF2_ARATH (Q9C7F5) Nuclear transport factor 2
(NTF-2), partial (78%)
Length = 637
Score = 33.9 bits (76), Expect = 0.13
Identities = 19/55 (34%), Positives = 25/55 (44%)
Frame = +3
Query: 19 PCLSTLLLASWPPVQKAAHSTSFSPSSDLTPSTISTPSSLRGFPLCSPTKDAADA 73
PC + L SW P + +S F +S TPS S PS P CS + A +
Sbjct: 42 PCSLSRLRRSWAPPTSSPNSLPFPSNSASTPSPPSIPSPPLSTPPCSSSSAATSS 206
>AW278013 similar to SP|P27484|GRP2 Glycine-rich protein 2. [Wood tobacco]
{Nicotiana sylvestris}, partial (48%)
Length = 344
Score = 32.7 bits (73), Expect = 0.28
Identities = 23/58 (39%), Positives = 30/58 (51%)
Frame = +2
Query: 25 LLASWPPVQKAAHSTSFSPSSDLTPSTISTPSSLRGFPLCSPTKDAADADAHHLSFTN 82
+LAS PP A +S+S SP SD T S S PS+ L +P AA + + TN
Sbjct: 74 VLAS*PPTTAARNSSSTSPPSDPTASAAS-PSASPSSSLLTPIPKAAPRPSTSPALTN 244
>TC219715
Length = 881
Score = 30.0 bits (66), Expect = 1.8
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 19/86 (22%)
Frame = -2
Query: 36 AHSTSFSPS----------SDLTPSTISTPSSLRGFPLCSPTKDAADADAHHLSFTNGM- 84
+H +SFS S S L ++TP LR P CSP +H L F +
Sbjct: 682 SHPSSFSTSEIIFILISSCSFLNLDLVTTPPKLRSSPFCSPA-------SHLLFFLESLG 524
Query: 85 --------FVDKSVSLSYPFRLLLAY 102
+D S LS FR+ L +
Sbjct: 523 RLLSIPCRLIDASFGLSKKFRIRLVF 446
>TC225227 similar to GB|AAF02830.1|6056366|AC009894 phosphoglycerate kinase
{Arabidopsis thaliana;} , partial (35%)
Length = 612
Score = 29.3 bits (64), Expect = 3.1
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 16 SIHPCLSTLLLASWPPVQKAAHSTSFSPSSDLT---PSTISTPSSLRGFPL 63
S+ LST+ A+ P HST+ + SS T PS + SSLR PL
Sbjct: 70 SLSLSLSTMASAAAPTTFSLLHSTTPASSSSATSASPSRVQLSSSLRSRPL 222
>TC227315 similar to UP|Q9ZRP8 (Q9ZRP8) Delta-8 sphingolipid desaturase,
partial (26%)
Length = 732
Score = 28.9 bits (63), Expect = 4.0
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 84 MFVDKSVSLSYPF-RLLLAYQYNASLASLDFKN 115
M +++S SL +PF RLL+ YQ+ +L L F N
Sbjct: 385 MIINQSFSLFHPFERLLINYQHLVNLLDLTFLN 483
>TC230818 similar to UP|Q9LDH9 (Q9LDH9) Gb|AAF34826.1 (MJM20.1 protein),
partial (94%)
Length = 782
Score = 28.9 bits (63), Expect = 4.0
Identities = 21/64 (32%), Positives = 29/64 (44%), Gaps = 1/64 (1%)
Frame = -3
Query: 11 KRRTSSIHPCLSTLLLASWPPVQKAAHSTSFSPSSDLTPS-TISTPSSLRGFPLCSPTKD 69
+RRT P +T PP ST PS++ TP+ + STP LC P+
Sbjct: 579 RRRTKKQSPWKTTS*PLCSPPSNSWPSSTHQPPSANQTPTLSSSTPPRTSPATLCPPSPA 400
Query: 70 AADA 73
AA +
Sbjct: 399 AASS 388
>TC209693 similar to UP|Q8LGA2 (Q8LGA2) Seed maturation-like protein, partial
(25%)
Length = 646
Score = 28.9 bits (63), Expect = 4.0
Identities = 23/59 (38%), Positives = 29/59 (48%), Gaps = 8/59 (13%)
Frame = +2
Query: 15 SSIHPCLSTLLLASWPP---VQKAAHSTSFSPSSDLTP-----STISTPSSLRGFPLCS 65
SS HP L LL PP +AA + S P+S TP ST+++P S P CS
Sbjct: 101 SSSHPSLPLFLLLRHPPSSSPSRAAAAASSPPASPTTPSPRATSTVASP*S----PPCS 265
>TC224715 homologue to UP|Q39882 (Q39882) Nodulin-26, partial (98%)
Length = 1270
Score = 28.9 bits (63), Expect = 4.0
Identities = 18/44 (40%), Positives = 24/44 (53%)
Frame = +2
Query: 14 TSSIHPCLSTLLLASWPPVQKAAHSTSFSPSSDLTPSTISTPSS 57
TSS L L +S PP + S+S SPS+ +P+ STP S
Sbjct: 635 TSSPTTALPPLPASSPPPSPMHSPSSSPSPSAPTSPAATSTPPS 766
>TC224025 weakly similar to UP|Q6HXC4 (Q6HXC4) Conserved domain protein,
partial (15%)
Length = 614
Score = 28.9 bits (63), Expect = 4.0
Identities = 21/54 (38%), Positives = 23/54 (41%)
Frame = +2
Query: 16 SIHPCLSTLLLASWPPVQKAAHSTSFSPSSDLTPSTISTPSSLRGFPLCSPTKD 69
S+HP LSTL L S PV S S P PS +S L P P D
Sbjct: 293 SLHPVLSTLPLLSLHPVLSTLPSLSLHPVLSTLPS-LSLLPVLSTLPSLGPPLD 451
>TC209225 similar to GB|CAC08342.1|10178284|ATF8L15 rev interacting protein
mis3-like {Arabidopsis thaliana;} , partial (19%)
Length = 779
Score = 28.9 bits (63), Expect = 4.0
Identities = 27/106 (25%), Positives = 45/106 (41%), Gaps = 8/106 (7%)
Frame = -3
Query: 7 KKIIKRRTSSIHPCLSTLLLASWPPVQKAAHSTSFSPSSDLTPSTISTPSSLRGFPLCSP 66
K + R ++ L+ LLA+ +Q A HS+S +T T + S + + +
Sbjct: 675 KDVKLRGLEVLYTLLT*CLLATTNKIQNATHSSS------MTNGTNNYASYIYVKTVTAK 514
Query: 67 TKDAADADAHHLSFTNGMFVDK--------SVSLSYPFRLLLAYQY 104
D D D H+ T FV K + +S+P +L+ QY
Sbjct: 513 ALDTEDLD*IHIHITCSSFVSKMKIMFKTFASWVSFPMLVLMILQY 376
>TC225557 similar to UP|Q9XFM6 (Q9XFM6) Progesterone-binding protein-like,
partial (67%)
Length = 965
Score = 28.5 bits (62), Expect = 5.3
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +1
Query: 11 KRRTSSIHPCLSTLLLASWPPVQKAAHSTSFSPSSDLTPSTISTP----SSLRGFPLCSP 66
KR S+ S +SWP +TSF SS P+T +TP SSLR + LC P
Sbjct: 115 KRTRGSLRTPSSPCWPSSWPS------TTSFRASSPPPPTTATTPPRVTSSLR-WSLCDP 273
>TC232689 similar to UP|PME3_PHAVU (Q43111) Pectinesterase 3 precursor
(Pectin methylesterase 3) (PE 3) , partial (32%)
Length = 755
Score = 28.5 bits (62), Expect = 5.3
Identities = 41/161 (25%), Positives = 76/161 (46%), Gaps = 17/161 (10%)
Frame = +1
Query: 5 SQKKIIKRRTSSIHPCLSTLLLASWPPVQKAAHSTSFSPSSDLTPSTISTP-SSLRG--- 60
++K++I SSI L +++A+ V +TS SPSSD P T TP +SL+
Sbjct: 79 TRKRLIIITVSSI--VLIAVIIAAIAGVVIHKRNTSSSPSSDSPPQTELTPAASLKAVCD 252
Query: 61 --------FPLCSPTKDAADADAHHL-SFTNGMFVDKSVSL-SYPFRLLLAYQYNASL-A 109
F S D+ D L + + +D+ L S+P +L +++A L
Sbjct: 253 VTQYPNSCFSAISSLPDSNTTDPELLFKLSLRVAIDELSKLSSFPSKLRANAEHDARLQK 432
Query: 110 SLDFKNR--GDRVLHDVNSLIELQSNGHITQLLPPGTITNL 148
++D GD + +S+ L S+G +++ P +++++
Sbjct: 433 AIDVCGNIFGDALDRLNDSISALGSSGGAGKIISPASVSDV 555
>TC226608 UP|PIN1_DIGLA (Q9LEK8) Peptidyl-prolyl cis-trans isomerase 1
(Rotamase Pin1) (PPIase Pin1) (DlPar13) , partial (34%)
Length = 861
Score = 28.5 bits (62), Expect = 5.3
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -1
Query: 99 LLAYQYNASLASLDFKNRGDRVLHDVNSLIELQSN-GHITQLLPPGTITNLTRLIFA 154
L AY +N ++ KN+ L +++ +EL N G+I Q+L I L R+I +
Sbjct: 840 LXAYVFNCHKNNISSKNKTPPCLKHISTDLELSKNPGNILQMLMSLLIRRLLRVIIS 670
>TC210415
Length = 672
Score = 28.5 bits (62), Expect = 5.3
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = -1
Query: 18 HPCLSTLLLASWPPVQKAAHSTSFSPS---SDLTPSTISTPSSLRGFPLCS 65
H CL +L+L+ P Q+ + S+S SPS S L P+ + S + F L S
Sbjct: 270 HTCLPSLILSFLLPQQQLS*SSSLSPSHWPSQLQPTPLPLQLSSQQFHLPS 118
>TC230446 weakly similar to UP|Q6V9S3 (Q6V9S3) RPE1 protein, partial (12%)
Length = 803
Score = 28.5 bits (62), Expect = 5.3
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +2
Query: 14 TSSIHPCLSTLLLASWPPVQKAAHSTSFSPSSDLTPSTISTPSSLRGFPLCSPT 67
+SS P S+ +S PP ++ STS SP+S T T S+ +S SPT
Sbjct: 41 SSSTTPPPSSTAGSSTPPSSRSPASTSTSPASRGTTKTASSSTSATPSTPPSPT 202
>BE190821 homologue to GP|20160466|dbj B1046G12.17 {Oryza sativa (japonica
cultivar-group)}, partial (6%)
Length = 473
Score = 28.1 bits (61), Expect = 6.9
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = +2
Query: 14 TSSIHPCLSTLLLASWPPVQKAAHSTSFSPSSDLTP-------STISTPSSLRGFPLCSP 66
T S C T LL P + TSFSP++ TP +T S P++ R CS
Sbjct: 125 TISSSKCFPTSLLLHGPSTKPHPIITSFSPTTSNTPTWPPSFATTRSPPTTTRPPLSCST 304
Query: 67 TKDAA 71
T ++
Sbjct: 305 TTSSS 319
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.138 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,883,057
Number of Sequences: 63676
Number of extensions: 238762
Number of successful extensions: 1648
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 1600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1628
length of query: 381
length of database: 12,639,632
effective HSP length: 99
effective length of query: 282
effective length of database: 6,335,708
effective search space: 1786669656
effective search space used: 1786669656
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0348.13