TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0348.12
         (180 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC205822 similar to GB|AAO63369.1|28950891|BT005305 At4g11960 {A...    32  0.12
TC218330 similar to GB|AAO63369.1|28950891|BT005305 At4g11960 {A...    28  2.3
TC222988 weakly similar to UP|Q9MAN5 (Q9MAN5) CDS, partial (29%)       28  2.3
TC207741 similar to UP|Q8W0V0 (Q8W0V0) Type IIB calcium ATPase, ...    28  2.3
TC204982 PIR|T06394|T06394 isoprenylated protein - soybean (frag...    27  6.8
TC219606 similar to UP|O48722 (O48722) Heme oxygenase 2 precurso...    26  8.9

>TC205822 similar to GB|AAO63369.1|28950891|BT005305 At4g11960 {Arabidopsis
           thaliana;} , partial (79%)
          Length = 1373

 Score = 32.3 bits (72), Expect = 0.12
 Identities = 36/120 (30%), Positives = 47/120 (39%)
 Frame = +1

Query: 59  PRCSIRRQSTYADAEGRRIYLWFLH*QAWALFLAFGSLACLGPLSYAVGIAYQNAFGSGL 118
           PRCS+R +  Y+D      YL  L     A  +A G    L  L+           G  +
Sbjct: 652 PRCSLRSRKVYSDLSVD--YLKMLLLNVPATVIALGLFFFLDDLT-----------GFEI 792

Query: 119 SHGSHNPGLGFSIIVNNIIFIVLGFVIGYPLASAPVKVIQGLWRNDLVALRGACPNCGEE 178
           ++    P   FS I      + L   I   L +A VK        D V L+G CPNCG E
Sbjct: 793 TYLLELPE-PFSFIFTWFAAVPLIVWIALSLTNAIVK--------DFVILKGPCPNCGTE 945


>TC218330 similar to GB|AAO63369.1|28950891|BT005305 At4g11960 {Arabidopsis
           thaliana;} , partial (61%)
          Length = 1066

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 29/122 (23%), Positives = 52/122 (41%), Gaps = 2/122 (1%)
 Frame = +3

Query: 59  PRCSIRRQSTYADAEGRRIYLWFLH*QAWALFLAFGSLACLGPLSYAVGIAY--QNAFGS 116
           PRCS+R +  Y+D     + ++ L+  A  +               A+G+ +   +  G 
Sbjct: 294 PRCSLRSRKVYSDLSVDYLKMFLLNVPATVV---------------ALGLFFFLDDVTGF 428

Query: 117 GLSHGSHNPGLGFSIIVNNIIFIVLGFVIGYPLASAPVKVIQGLWRNDLVALRGACPNCG 176
            +S+   +P     I+     F  + F++   LA +  + I      D + L+G CPNCG
Sbjct: 429 EISYMIKSPEPVSFILT---WFAAIPFILW--LAQSITRAIV----QDFLILKGPCPNCG 581

Query: 177 EE 178
            E
Sbjct: 582 TE 587


>TC222988 weakly similar to UP|Q9MAN5 (Q9MAN5) CDS, partial (29%)
          Length = 474

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 17/59 (28%), Positives = 27/59 (44%)
 Frame = +2

Query: 87  WALFLAFGSLACLGPLSYAVGIAYQNAFGSGLSHGSHNPGLGFSIIVNNIIFIVLGFVI 145
           W + +AFG +A       A  +   N  G G S  +      FSI+V  +   V+GF++
Sbjct: 239 WEMMIAFGFMA-------AASVRVANELGRGSSKAAK-----FSIVVTVLTSFVIGFIL 379


>TC207741 similar to UP|Q8W0V0 (Q8W0V0) Type IIB calcium ATPase, partial
           (24%)
          Length = 947

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 135 NIIFIVLGFVIGYPLASAPVKVIQGLWRNDLVALRGA 171
           NI+ +++ FV      SAP+  +Q LW N ++   GA
Sbjct: 111 NIVALIINFVSACITGSAPLTAVQLLWVNLIMDTLGA 221


>TC204982 PIR|T06394|T06394 isoprenylated protein - soybean (fragment)
           {Glycine max;} , complete
          Length = 1230

 Score = 26.6 bits (57), Expect = 6.8
 Identities = 16/34 (47%), Positives = 17/34 (49%), Gaps = 4/34 (11%)
 Frame = -3

Query: 101 PLSYAVGIAY----QNAFGSGLSHGSHNPGLGFS 130
           P   A+G A      N  G GLS G   PGLGFS
Sbjct: 745 PTGTAIGAAICGCTGNGAGVGLSLGFSGPGLGFS 644


>TC219606 similar to UP|O48722 (O48722) Heme oxygenase 2 precursor (HO2),
           partial (66%)
          Length = 948

 Score = 26.2 bits (56), Expect = 8.9
 Identities = 12/39 (30%), Positives = 22/39 (55%), Gaps = 2/39 (5%)
 Frame = -1

Query: 111 QNAFGSGLSHGSHNPGLGFSI--IVNNIIFIVLGFVIGY 147
           QN FG+ +  G H+  +GF++  I  + +F+    + GY
Sbjct: 138 QNLFGTEIGSGKHSCRMGFAVNHIAPSFLFLPC*LIDGY 22


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.340    0.149    0.512 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,605,224
Number of Sequences: 63676
Number of extensions: 144483
Number of successful extensions: 887
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of query: 180
length of database: 12,639,632
effective HSP length: 91
effective length of query: 89
effective length of database: 6,845,116
effective search space: 609215324
effective search space used: 609215324
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 56 (26.2 bits)