TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0346.5
         (350 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC231379 similar to UP|Q9FI52 (Q9FI52) Nucleotide-binding protei...   311  2e-85
TC232270 similar to UP|Q8GUW6 (Q8GUW6) Nucleotide binding protei...   222  2e-58
TC229379 similar to UP|O49472 (O49472) ATP binding protein-like,...   125  4e-29
TC217929 similar to UP|Q6STH5 (Q6STH5) [4Fe-4S] cluster assembly...    96  2e-20
TC234553                                                               30  1.3
TC227091 similar to UP|Q7Q6L1 (Q7Q6L1) AgCP5440 (Fragment), part...    29  3.6
TC213075 weakly similar to UP|ETO1_ARATH (O65020) Ethylene-overp...    28  6.2
TC214814 homologue to UP|Q8GUB5 (Q8GUB5) Vacuolar ATPase subunit...    28  6.2

>TC231379 similar to UP|Q9FI52 (Q9FI52) Nucleotide-binding protein, partial
           (59%)
          Length = 653

 Score =  311 bits (798), Expect = 2e-85
 Identities = 149/188 (79%), Positives = 167/188 (88%)
 Frame = +2

Query: 1   MEKGDIPENANDHCPGSQSDSAGKSDGCQGCPNQQTCATSSPKGPDSDLVAIKERMATVK 60
           ME  DIPENAN+HCPG QS+SAGKSD C+GCPNQQ CAT+ PKGPD DLVAI ERMATVK
Sbjct: 83  MENADIPENANEHCPGPQSESAGKSDACEGCPNQQICATA-PKGPDPDLVAIAERMATVK 259

Query: 61  HKILVLSGKGGVGKSTFSAQLAFALAAKDFEVGLLDIDICGPSIPKMLGLEGHELHRSNF 120
           HKILVLSGKGGVGKSTFSAQLAFALAA+DF+VGLLD+DICGPSIPKMLGLEG E+H+SN 
Sbjct: 260 HKILVLSGKGGVGKSTFSAQLAFALAARDFQVGLLDVDICGPSIPKMLGLEGQEIHQSNL 439

Query: 121 GCDPVYVQPNLGVMSIGFVNSDPDDPIILRGPRKSWLITEFLKDVYWNELDFLIVDAPPG 180
           G  PVYV+ NLGVMS+GF+  +PD+ +I RGPRK+ LI +FLKDVYW ELDFLIVDAPPG
Sbjct: 440 GWSPVYVESNLGVMSVGFMLPNPDEAVIWRGPRKNGLIKQFLKDVYWGELDFLIVDAPPG 619

Query: 181 TSDEQISI 188
           TSDE IS+
Sbjct: 620 TSDEHISL 643


>TC232270 similar to UP|Q8GUW6 (Q8GUW6) Nucleotide binding protein, partial
           (37%)
          Length = 683

 Score =  222 bits (566), Expect = 2e-58
 Identities = 104/145 (71%), Positives = 123/145 (84%)
 Frame = +1

Query: 183 DEQISIVKLLGATGLDGAIIITTPQQVSLTDVRKGVNFCKQAEVKVLGVVENMSGLCQPV 242
           DE IS+V+ L ATG+DGA  +TTPQQ+SL DVRK VNFCK+  VKVLGVVENMSGLC P+
Sbjct: 1   DEHISLVQCLDATGIDGAXXVTTPQQISLIDVRKEVNFCKKVGVKVLGVVENMSGLCLPI 180

Query: 243 MDFKFLKLASNGEQKDVTEWFLKFMREKAPEMVDMIACTEVFDSSGGGAVRMCKEMMIPF 302
            DFKF+KL  NGEQKDVT+W  ++MREKAPEM++++ACTEVFDSSGGGAV+M  +M +PF
Sbjct: 181 TDFKFMKLTDNGEQKDVTQWVWEYMREKAPEMLNLLACTEVFDSSGGGAVKMSNDMGVPF 360

Query: 303 LGKVPLDPKLCKAAEEGRSCFDDKD 327
           LG VPLDP+LCKAAEEG SCF  KD
Sbjct: 361 LGNVPLDPQLCKAAEEGSSCFAKKD 435


>TC229379 similar to UP|O49472 (O49472) ATP binding protein-like, partial
           (73%)
          Length = 1527

 Score =  125 bits (313), Expect = 4e-29
 Identities = 96/270 (35%), Positives = 134/270 (49%), Gaps = 5/270 (1%)
 Frame = +2

Query: 55  RMATVKHKILVLSGKGGVGKSTFSAQLAFALAAK-DFEVGLLDIDICGPSIPKMLGLEGH 113
           R+  VK+ I V SGKGGVGKST +  LA ALA K   +VGLLD D+ GPSIP M+ +   
Sbjct: 143 RIDGVKNTIAVASGKGGVGKSTTAVNLAVALARKCQLKVGLLDADVYGPSIPTMMNINTK 322

Query: 114 ELHRSNFGCDPVYVQPNLGV--MSIGFVNSDPDDPIIL-RGPRK-SWLITEFLKDVYWNE 169
                +    PV    N G+  MSIG +  + D PI+  R P      + +  + V W  
Sbjct: 323 PEVTHDKKMIPV---ENYGIKCMSIGLL-VEKDAPIVXERVPXGIKXALEKMTRGVDWGN 490

Query: 170 LDFLIVDAPPGTSDEQISIVKLLGATGLDGAIIITTPQQVSLTDVRKGVNFCKQAEVKVL 229
           LD L++D PPGT D QI++ + L    L GA+I++TPQ V+L D R+GV    + +V +L
Sbjct: 491 LDILVMDMPPGTGDVQIAMSQNLQ---LSGALIVSTPQDVALMDARRGVKMFNKVDVPIL 661

Query: 230 GVVENMSGLCQPVMDFKFLKLASNGEQKDVTEWFLKFMREKAPEMVDMIACTEVFDSSGG 289
           G+VENMS            K    GE                            +    G
Sbjct: 662 GIVENMS----------CFKCPHCGEPS--------------------------YIFGKG 733

Query: 290 GAVRMCKEMMIPFLGKVPLDPKLCKAAEEG 319
           G  R   EM +  LGK+PL+ ++ +A ++G
Sbjct: 734 GTQRTASEMGLELLGKIPLEVEIREACDQG 823


>TC217929 similar to UP|Q6STH5 (Q6STH5) [4Fe-4S] cluster assembly factor,
           partial (64%)
          Length = 1316

 Score = 95.9 bits (237), Expect = 2e-20
 Identities = 64/167 (38%), Positives = 91/167 (54%), Gaps = 2/167 (1%)
 Frame = +3

Query: 71  GVGKSTFSAQLAFALAAKDFEVGLLDIDICGPSIPKMLGLEGHELHRSNFGCDPVYVQPN 130
           GVGKST +  LA+ LA     VGL D D+ GPS+P M+  E + L   N     +     
Sbjct: 3   GVGKSTVAVNLAYTLADMGARVGLFDADVYGPSLPTMVSPE-NRLLVMNPEKKTIIPTEY 179

Query: 131 LGV--MSIGFVNSDPDDPIILRGPRKSWLITEFLKDVYWNELDFLIVDAPPGTSDEQISI 188
           LGV  +S GF      +  I+RGP    +I + L      ELD+LI+D  PGT D Q+++
Sbjct: 180 LGVKLISFGFAG---QERAIMRGPMVYEVINQLLNTTE*GELDYLIIDMHPGTGDIQLTL 350

Query: 189 VKLLGATGLDGAIIITTPQQVSLTDVRKGVNFCKQAEVKVLGVVENM 235
            +++  T    A+I+TTPQ++   DV KGV    + +V  + VVENM
Sbjct: 351 CQVVPLT---DAVIVTTPQKL*FIDVAKGVRMFSKLKVPCVAVVENM 482


>TC234553 
          Length = 740

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/42 (30%), Positives = 19/42 (44%)
 Frame = -3

Query: 7   PENANDHCPGSQSDSAGKSDGCQGCPNQQTCATSSPKGPDSD 48
           P  A   C G+ + + G   GC G P + +C  S   G  +D
Sbjct: 552 PNLAGGACSGNGNTATGSCGGCSGAPVKSSCRASFFAGTSND 427


>TC227091 similar to UP|Q7Q6L1 (Q7Q6L1) AgCP5440 (Fragment), partial (58%)
          Length = 1610

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 15/37 (40%), Positives = 22/37 (58%)
 Frame = +2

Query: 62  KILVLSGKGGVGKSTFSAQLAFALAAKDFEVGLLDID 98
           K + + GKGGVGK+T S+ L+  LA     V ++  D
Sbjct: 335 KWIFVGGKGGVGKTTCSSILSILLATVRSSVLIISTD 445


>TC213075 weakly similar to UP|ETO1_ARATH (O65020) Ethylene-overproduction
           protein 1, partial (8%)
          Length = 594

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 15/40 (37%), Positives = 18/40 (44%)
 Frame = +2

Query: 1   MEKGDIPENANDHCPGSQSDSAGKSDGCQGCPNQQTCATS 40
           +E G  P + NDHC             CQ  PNQ+TC  S
Sbjct: 392 LEHGFSPCSVNDHCQ------------CQKEPNQETCTDS 475


>TC214814 homologue to UP|Q8GUB5 (Q8GUB5) Vacuolar ATPase subunit B  , partial
            (76%)
          Length = 1639

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 18   QSDSAGKSDGCQGCPNQQTCATSSPKGPDS 47
            Q    G   GC   P QQT + +SPK PD+
Sbjct: 1034 QDQVTGIYCGCHRLPGQQTSSQTSPKIPDT 945


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.318    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,180,297
Number of Sequences: 63676
Number of extensions: 198833
Number of successful extensions: 840
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of query: 350
length of database: 12,639,632
effective HSP length: 98
effective length of query: 252
effective length of database: 6,399,384
effective search space: 1612644768
effective search space used: 1612644768
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)