BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0346.4
(142 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC232373 weakly similar to UP|AB10_MOUSE (Q9JI39) ATP-binding ca... 73 3e-17
TC220745 similar to UP|Q9LHD1 (Q9LHD1) Multidrug resistance p-gl... 76 8e-17
TC207563 similar to UP|Q9ZRG2 (Q9ZRG2) P-glycoprotein, partial (... 81 2e-16
TC208899 similar to UP|Q9LHD1 (Q9LHD1) Multidrug resistance p-gl... 75 1e-14
TC207459 similar to UP|Q94IH6 (Q94IH6) CjMDR1, partial (30%) 67 3e-14
TC213020 weakly similar to UP|Q8GU71 (Q8GU71) MDR-like ABC trans... 73 4e-14
TC229512 similar to UP|Q9SDM5 (Q9SDM5) P-glycoprotein, partial (... 73 4e-14
TC207595 similar to GB|AAG45492.1|12061244|AY013245 36I5.4 {Oryz... 71 2e-13
TC207596 similar to UP|Q7GBY1 (Q7GBY1) Tonoplast ABC transporter... 71 2e-13
TC229308 similar to UP|Q8H6F5 (Q8H6F5) MDR-like p-glycoprotein, ... 68 4e-13
TC229513 similar to UP|Q9SDM5 (Q9SDM5) P-glycoprotein, partial (... 69 7e-13
TC233020 similar to UP|Q9LHD1 (Q9LHD1) Multidrug resistance p-gl... 50 2e-09
TC207346 homologue to GB|AAO39923.1|28372882|BT003695 At3g55320 ... 55 9e-09
TC207756 similar to UP|Q8RY46 (Q8RY46) Transporter associated wi... 50 4e-07
TC207758 similar to UP|Q8RY46 (Q8RY46) Transporter associated wi... 47 2e-06
TC219347 similar to UP|Q9LF78 (Q9LF78) Mitochondrial half-ABC tr... 43 6e-05
TC223278 similar to UP|Q9FFM7 (Q9FFM7) ABC transporter-like prot... 39 6e-04
TC227968 similar to UP|Q9M1C7 (Q9M1C7) Multi resistance protein ... 38 0.001
TC229309 homologue to UP|Q9LJX0 (Q9LJX0) P-glycoprotein; multi-d... 34 0.003
TC219348 similar to UP|Q9LF78 (Q9LF78) Mitochondrial half-ABC tr... 36 0.007
>TC232373 weakly similar to UP|AB10_MOUSE (Q9JI39) ATP-binding cassette,
sub-family B, member 10, mitochondrial precursor
(ATP-binding cassette transporter 10) (ABC transporter
10 protein) (ABC-mitochondrial erythroid protein)
(ABC-me protein), partial (24%)
Length = 742
Score = 72.8 bits (177), Expect(2) = 3e-17
Identities = 35/62 (56%), Positives = 49/62 (78%)
Frame = +1
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
+ VQ+ALD+ M+ RTT+V+AHRLSTI+ AD +AV+Q G ++E G HD L +KG G+YA+
Sbjct: 460 RVVQDALDQVMVDRTTIVVAHRLSTIKDADSIAVVQNGVIAEQGKHDTLLNKG--GIYAS 633
Query: 113 LV 114
LV
Sbjct: 634 LV 639
Score = 31.2 bits (69), Expect(2) = 3e-17
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +3
Query: 12 GCKSATLWKAKTENSDSKGNAEKTSNSSPR*GNKCIGL*VRKA 54
G + +T+W+A+ + K ++E++ N + R* +KC *V K+
Sbjct: 336 GERDSTIWRAEAAGGNCKSHSEESKNITAR*SHKCT*C*V*KS 464
>TC220745 similar to UP|Q9LHD1 (Q9LHD1) Multidrug resistance p-glycoprotein,
partial (18%)
Length = 1050
Score = 76.3 bits (186), Expect(2) = 8e-17
Identities = 35/65 (53%), Positives = 48/65 (73%)
Frame = +3
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
K VQ+AL+R M+GRT++V+AHRLSTI+ DL+AVL +G V E GTH L + G G Y +
Sbjct: 495 KLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGKVVEKGTHSSLLAHGPGGAYYS 674
Query: 113 LVKMQ 117
L+ +Q
Sbjct: 675 LISLQ 689
Score = 26.2 bits (56), Expect(2) = 8e-17
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 14 KSATLWKAKTENSDSKGNAEKTSNSSPR*GNKC 46
+SATLW +K +N +S + E++ + * +KC
Sbjct: 377 RSATLWGSKAKNCNS*SHIEESRSVVVG*SHKC 475
>TC207563 similar to UP|Q9ZRG2 (Q9ZRG2) P-glycoprotein, partial (24%)
Length = 1164
Score = 80.9 bits (198), Expect = 2e-16
Identities = 36/81 (44%), Positives = 56/81 (68%)
Frame = +1
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
++VQEALDR G+TT+++AHRLSTIR A+L+AV+ G V+E G+H +L +G+YA
Sbjct: 691 RSVQEALDRASSGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNHPDGIYAR 870
Query: 113 LVKMQEMAHETAMNNARKSSA 133
++++Q H + A SS+
Sbjct: 871 MIQLQRFTHSQVIGMASGSSS 933
>TC208899 similar to UP|Q9LHD1 (Q9LHD1) Multidrug resistance p-glycoprotein,
partial (14%)
Length = 983
Score = 75.1 bits (183), Expect = 1e-14
Identities = 40/81 (49%), Positives = 51/81 (62%)
Frame = +3
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
K VQ+ L R M GRT +V+AHRLSTI D++ VL++G V EIGTH L +KG G Y +
Sbjct: 363 KVVQDTLMRVMRGRTGVVVAHRLSTIHNCDVIGVLEKGRVVEIGTHSSLLAKGSCGAYYS 542
Query: 113 LVKMQEMAHETAMNNARKSSA 133
LV +Q H T NN + A
Sbjct: 543 LVSLQ-TRHATTPNNTSCTKA 602
>TC207459 similar to UP|Q94IH6 (Q94IH6) CjMDR1, partial (30%)
Length = 1329
Score = 67.0 bits (162), Expect(2) = 3e-14
Identities = 32/68 (47%), Positives = 50/68 (73%)
Frame = +1
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
+ VQ+ALD+ M+ RTT+V+AHRLSTI+ AD++AV++ G + E G H++L + G YA+
Sbjct: 946 RVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGKHEKLINV-SGGFYAS 1122
Query: 113 LVKMQEMA 120
LV++ A
Sbjct: 1123 LVQLHTSA 1146
Score = 26.6 bits (57), Expect(2) = 3e-14
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 14 KSATLWKAKTENSDSKGNAEKTSNSSPR*GNKCIGL*VRKA 54
++ +W A+ S+ + K+ + + R*G KCI *VRK+
Sbjct: 828 RNPIIWWAEATGSNCSCHN*KSKDIATR*GYKCIRC*VRKS 950
>TC213020 weakly similar to UP|Q8GU71 (Q8GU71) MDR-like ABC transporter,
partial (18%)
Length = 864
Score = 73.2 bits (178), Expect = 4e-14
Identities = 37/71 (52%), Positives = 52/71 (73%)
Frame = +1
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
+ VQEALD+ M GRTT+++AHRLST+R A+ +AVLQ G V+E+G+H+ L +K +Y
Sbjct: 469 RLVQEALDKLMEGRTTILVAHRLSTVRDANSIAVLQNGRVAEMGSHERLMAK-SGSIYKQ 645
Query: 113 LVKMQEMAHET 123
LV +Q HET
Sbjct: 646 LVSLQ---HET 669
>TC229512 similar to UP|Q9SDM5 (Q9SDM5) P-glycoprotein, partial (11%)
Length = 633
Score = 73.2 bits (178), Expect = 4e-14
Identities = 35/70 (50%), Positives = 49/70 (70%)
Frame = +1
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
+ VQ+ALDR M RTT+++AHRLSTIR AD ++VLQ G + + GTH L + +NG Y
Sbjct: 202 RIVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIDQGTHSSLI-ENKNGAYYK 378
Query: 113 LVKMQEMAHE 122
LV +Q+ H+
Sbjct: 379 LVNLQQQQHQ 408
>TC207595 similar to GB|AAG45492.1|12061244|AY013245 36I5.4 {Oryza sativa
(japonica cultivar-group);} , partial (12%)
Length = 607
Score = 71.2 bits (173), Expect = 2e-13
Identities = 38/63 (60%), Positives = 45/63 (71%)
Frame = +3
Query: 55 VQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANLV 114
VQ+A++ M GRT LVIAHRLST++ AD VAV+ G V E G H+EL SK NGVY LV
Sbjct: 60 VQDAMESLMKGRTVLVIAHRLSTVKTADTVAVISDGQVVERGNHEELLSK--NGVYTALV 233
Query: 115 KMQ 117
K Q
Sbjct: 234 KRQ 242
>TC207596 similar to UP|Q7GBY1 (Q7GBY1) Tonoplast ABC transporter IDI7,
partial (35%)
Length = 1076
Score = 70.9 bits (172), Expect = 2e-13
Identities = 38/72 (52%), Positives = 49/72 (67%)
Frame = +2
Query: 55 VQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANLV 114
VQ+A++ M GRT LVIAHRLST++ AD VAV+ G V E G H+EL +K NGVY LV
Sbjct: 470 VQDAMESLMKGRTVLVIAHRLSTVKTADTVAVISDGQVVERGNHEELLNK--NGVYTALV 643
Query: 115 KMQEMAHETAMN 126
K Q +T ++
Sbjct: 644 KRQLQTTKTEIS 679
>TC229308 similar to UP|Q8H6F5 (Q8H6F5) MDR-like p-glycoprotein, partial
(11%)
Length = 617
Score = 67.8 bits (164), Expect(2) = 4e-13
Identities = 33/63 (52%), Positives = 47/63 (74%)
Frame = +3
Query: 55 VQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANLV 114
+QEAL+R M GRTT+++AHRLSTIR D + V+Q G + E G+H EL S+ E G Y+ L+
Sbjct: 231 LQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPE-GAYSRLL 407
Query: 115 KMQ 117
++Q
Sbjct: 408 QLQ 416
Score = 22.3 bits (46), Expect(2) = 4e-13
Identities = 14/38 (36%), Positives = 19/38 (49%)
Frame = +2
Query: 14 KSATLWKAKTENSDSKGNAEKTSNSSPR*GNKCIGL*V 51
+ T +AK ++ K A N S R*G+KC *V
Sbjct: 107 RCTTXXRAKAKDCYCKSCA*GPHNXSTR*GHKCTRC*V 220
>TC229513 similar to UP|Q9SDM5 (Q9SDM5) P-glycoprotein, partial (10%)
Length = 620
Score = 68.9 bits (167), Expect = 7e-13
Identities = 34/66 (51%), Positives = 46/66 (69%)
Frame = +3
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
+ VQ ALDR M RTT+++AHRLSTIR AD ++VLQ G + + GTH L + +NG Y
Sbjct: 174 RIVQPALDRLMQNRTTIMVAHRLSTIRNADQISVLQDGKIIDQGTHSSLI-ENKNGAYYK 350
Query: 113 LVKMQE 118
LV +Q+
Sbjct: 351 LVNLQQ 368
>TC233020 similar to UP|Q9LHD1 (Q9LHD1) Multidrug resistance p-glycoprotein,
partial (15%)
Length = 605
Score = 49.7 bits (117), Expect(2) = 2e-09
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +1
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSV 92
+ VQEALD +G TT++IAHRLSTI+ ADL+AV+ G +
Sbjct: 481 RLVQEALDNAAVGCTTIIIAHRLSTIQNADLIAVVGGGKI 600
Score = 27.3 bits (59), Expect(2) = 2e-09
Identities = 15/32 (46%), Positives = 21/32 (64%)
Frame = +3
Query: 22 KTENSDSKGNAEKTSNSSPR*GNKCIGL*VRK 53
KTE+S+ +GN +T+NS NK GL VR+
Sbjct: 387 KTEDSNCEGNN*ETTNSPSGRSNKRAGLRVRE 482
>TC207346 homologue to GB|AAO39923.1|28372882|BT003695 At3g55320 {Arabidopsis
thaliana;} , partial (80%)
Length = 1120
Score = 55.5 bits (132), Expect = 9e-09
Identities = 29/64 (45%), Positives = 43/64 (66%), Gaps = 1/64 (1%)
Frame = +1
Query: 53 KAVQEALDRFMIG-RTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYA 111
+ VQEALD ++G +TT++IAHR + +R D + VL G + E GTHD L +K NG+Y
Sbjct: 190 RVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLVAK--NGLYV 363
Query: 112 NLVK 115
L++
Sbjct: 364 RLMQ 375
>TC207756 similar to UP|Q8RY46 (Q8RY46) Transporter associated with antigen
processing-like protein, partial (17%)
Length = 785
Score = 50.1 bits (118), Expect = 4e-07
Identities = 25/52 (48%), Positives = 36/52 (69%)
Frame = +3
Query: 66 RTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANLVKMQ 117
R+ +VIAHRLSTI+ AD + V+ G + E+G+H EL K +G+YA L + Q
Sbjct: 201 RSVIVIAHRLSTIQAADRIVVMDGGEIVEMGSHRELLLK--DGLYARLTRKQ 350
>TC207758 similar to UP|Q8RY46 (Q8RY46) Transporter associated with antigen
processing-like protein, partial (7%)
Length = 581
Score = 47.4 bits (111), Expect = 2e-06
Identities = 24/49 (48%), Positives = 34/49 (68%)
Frame = +1
Query: 69 LVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANLVKMQ 117
+VIAHRLSTI+ AD + V+ G + E+G+H EL K +G+YA L + Q
Sbjct: 4 IVIAHRLSTIQAADRIVVMDGGHIIEMGSHRELLLK--DGLYARLTRKQ 144
>TC219347 similar to UP|Q9LF78 (Q9LF78) Mitochondrial half-ABC transporter,
partial (36%)
Length = 1085
Score = 42.7 bits (99), Expect = 6e-05
Identities = 25/59 (42%), Positives = 33/59 (55%)
Frame = +1
Query: 55 VQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANL 113
+ AL RT++ IAHRL+T + D + VL+ G V E G H+ L SK G YA L
Sbjct: 577 ILSALKSVANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGPHEVLLSKA--GRYAQL 747
>TC223278 similar to UP|Q9FFM7 (Q9FFM7) ABC transporter-like protein
(Fragment), partial (35%)
Length = 507
Score = 39.3 bits (90), Expect = 6e-04
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Frame = +3
Query: 55 VQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEI-------GTH-DELCSKG 105
V++A++R M RT LVI+HRL T+ A V +L G + E+ G H D L S G
Sbjct: 108 VRQAVERLMQNRTVLVISHRLETVMMAKRVFLLDNGKLKELPQSTLLDGHHKDSLLSSG 284
>TC227968 similar to UP|Q9M1C7 (Q9M1C7) Multi resistance protein homolog,
partial (21%)
Length = 1587
Score = 38.1 bits (87), Expect = 0.001
Identities = 21/61 (34%), Positives = 33/61 (53%)
Frame = +1
Query: 55 VQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANLV 114
+Q + + RT + IAHR+ T+ +DLV VL G V+E +L K E+ + L+
Sbjct: 760 IQNIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRVAEYDEPSKLLEK-EDSFFFKLI 936
Query: 115 K 115
K
Sbjct: 937 K 939
>TC229309 homologue to UP|Q9LJX0 (Q9LJX0) P-glycoprotein; multi-drug
resistance related; ABC transporter-like protein,
partial (22%)
Length = 841
Score = 34.3 bits (77), Expect(2) = 0.003
Identities = 19/46 (41%), Positives = 24/46 (51%)
Frame = +3
Query: 14 KSATLWKAKTENSDSKGNAEKTSNSSPR*GNKCIGL*VRKAVQEAL 59
+ TLW+AK ++ K A NSS R*G+KC *VR L
Sbjct: 678 RCTTLWRAKAKDCHCKSRA*GPHNSSTR*GHKCT*C*VRVCATRGL 815
Score = 21.6 bits (44), Expect(2) = 0.003
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 55 VQEALDRFMIGRT 67
+QEAL+R M GRT
Sbjct: 802 LQEALERLMRGRT 840
>TC219348 similar to UP|Q9LF78 (Q9LF78) Mitochondrial half-ABC transporter,
partial (8%)
Length = 510
Score = 35.8 bits (81), Expect = 0.007
Identities = 20/43 (46%), Positives = 25/43 (57%)
Frame = +1
Query: 71 IAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANL 113
I HRL+T + D + VL+ G V E G H+ L SK G YA L
Sbjct: 4 IGHRLTTAMQCDEIIVLENGKVIEQGPHEVLLSKA--GRYAQL 126
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.335 0.142 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,014,002
Number of Sequences: 63676
Number of extensions: 46127
Number of successful extensions: 350
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of query: 142
length of database: 12,639,632
effective HSP length: 88
effective length of query: 54
effective length of database: 7,036,144
effective search space: 379951776
effective search space used: 379951776
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0346.4