BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0346.3
(374 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211943 198 3e-51
TC211828 similar to UP|RPIA_ARATH (Q9ZU38) Probable-ribose 5-pho... 36 0.032
TC214758 similar to UP|RPIA_ARATH (Q9ZU38) Probable-ribose 5-pho... 33 0.16
TC209338 weakly similar to UP|Q8W586 (Q8W586) AT4g21800/F17L22_2... 33 0.16
TC224567 similar to PIR|T51159|T51159 HMG protein [imported] - A... 32 0.61
TC224760 similar to UP|O04692 (O04692) DNA-binding protein, part... 32 0.61
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 31 1.0
TC224625 similar to UP|O04692 (O04692) DNA-binding protein, part... 31 1.0
TC203361 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%) 31 1.0
TC235094 similar to UP|PRT3_SCYCA (P30258) Protamine Z3 (Scyllio... 30 1.4
TC227390 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacety... 30 1.8
TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 29 3.0
TC210776 similar to UP|Q8H6B1 (Q8H6B1) Global transcription fact... 29 3.0
TC209130 similar to PIR|T48518|T48518 transcription factor like ... 29 3.9
TC224054 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C2... 29 3.9
TC218584 29 3.9
TC206168 similar to UP|Q93VP4 (Q93VP4) At1g07470/F22G5_13 (TFIIA... 28 5.1
TC229591 UP|O82585 (O82585) NADP-dependent isocitrate dehydrogen... 28 5.1
TC215452 similar to UP|P93488 (P93488) NAP1Ps, partial (29%) 28 5.1
>TC211943
Length = 527
Score = 198 bits (504), Expect = 3e-51
Identities = 99/132 (75%), Positives = 112/132 (84%)
Frame = +2
Query: 1 MAESICRTLRDGALEGELAPTLTITDSLTSPLASDVFSHLLLQLSSHLIASKSHSQFRSG 60
MA+SICRTLRDGALEGELAPTLTI DSL SP A VFSH+LLQLSSH+IA KS SQ G
Sbjct: 140 MADSICRTLRDGALEGELAPTLTIKDSLASPFAFHVFSHILLQLSSHVIAQKSQSQ---G 310
Query: 61 IVIVALSRTPSSYAALFKTKGIHISSSNNNWIHILDCYTDPLGWKEKPRKSQNVTNPSHQ 120
IVIVALSR+PSSY +L K G+ ++SSNN WIHILDCYTDPLGWK+K RK+ N TNPS Q
Sbjct: 311 IVIVALSRSPSSYTSLLKMNGMDVASSNNKWIHILDCYTDPLGWKDKTRKTVNATNPSQQ 490
Query: 121 VSLATTSYKTVK 132
+SLAT+SYK+VK
Sbjct: 491 ISLATSSYKSVK 526
>TC211828 similar to UP|RPIA_ARATH (Q9ZU38) Probable-ribose 5-phosphate
isomerase (Phosphoriboisomerase) , partial (47%)
Length = 729
Score = 35.8 bits (81), Expect = 0.032
Identities = 28/102 (27%), Positives = 50/102 (48%), Gaps = 8/102 (7%)
Frame = +1
Query: 106 EKPRKSQNVTNPSHQVSLATT--------SYKTVKDLDKLFSVITELGRGLIGENKARFC 157
EK + +PS S+ T +YK V+ ++ ++ LG G ++
Sbjct: 301 EKAAMDAGLLHPSSPSSVILTQDDLKKIAAYKAVEYVES--GMVLGLGTGSTAKH----- 459
Query: 158 VAIDSLSELLRHASLQSVAGLLSNLRSHDQISSIFGLLHSDL 199
A+D + ELLR L+ + G+ ++ ++HDQ S+ G+ SDL
Sbjct: 460 -AVDRIGELLRQGKLKDIVGIPTSTKTHDQALSL-GIPLSDL 579
>TC214758 similar to UP|RPIA_ARATH (Q9ZU38) Probable-ribose 5-phosphate
isomerase (Phosphoriboisomerase) , partial (79%)
Length = 836
Score = 33.5 bits (75), Expect = 0.16
Identities = 22/73 (30%), Positives = 41/73 (56%)
Frame = +2
Query: 127 SYKTVKDLDKLFSVITELGRGLIGENKARFCVAIDSLSELLRHASLQSVAGLLSNLRSHD 186
+YK V+ ++ +I LG G ++ A+D + ELLR L+ + G+ ++ ++H+
Sbjct: 200 AYKAVEYVES--GMILGLGTGSTAKH------AVDRIGELLRQGKLKDIVGIPTSTKTHE 355
Query: 187 QISSIFGLLHSDL 199
Q S+ G+ SDL
Sbjct: 356 QALSL-GIPLSDL 391
>TC209338 weakly similar to UP|Q8W586 (Q8W586) AT4g21800/F17L22_260, partial
(28%)
Length = 544
Score = 33.5 bits (75), Expect = 0.16
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 325 RRSLDDNSSEAAPISSGKKENSEMGEIIYFRDSDDEMPDSDEDPDDDLDI 374
RR ++ + E +S+G K+ ++ D D+EM D+D DDDL I
Sbjct: 207 RRDMEKSGGETVVLSTGLKDKEASKSMMDEEDEDEEM---DDDDDDDLGI 347
>TC224567 similar to PIR|T51159|T51159 HMG protein [imported] - Arabidopsis
thaliana {Arabidopsis thaliana;} , partial (71%)
Length = 876
Score = 31.6 bits (70), Expect = 0.61
Identities = 34/124 (27%), Positives = 49/124 (39%)
Frame = +2
Query: 248 FKRRNGRVRVTCEEFKVEAGGISLTSVSSADGATVAGLLPKVQFNLQLSEKEKTDRAKVV 307
FK N V+ K AGG S+SSA+ A + K K + K++
Sbjct: 338 FKAENPLVKAVSVVGK--AGGEKWKSLSSAEKAPYEAK----------AAKRKAEYEKLI 481
Query: 308 LPFEHQGTGRPIQIYDGRRSLDDNSSEAAPISSGKKENSEMGEIIYFRDSDDEMPDSDED 367
+E + S DD+ S+ + S E+ GE + D DDE + DED
Sbjct: 482 KAYEKKQAS----------SADDDESDKSK-SEVNDEDDASGEEDHQEDEDDEEEEDDED 628
Query: 368 PDDD 371
D D
Sbjct: 629 DD*D 640
>TC224760 similar to UP|O04692 (O04692) DNA-binding protein, partial (73%)
Length = 654
Score = 31.6 bits (70), Expect = 0.61
Identities = 34/124 (27%), Positives = 49/124 (39%)
Frame = +3
Query: 248 FKRRNGRVRVTCEEFKVEAGGISLTSVSSADGATVAGLLPKVQFNLQLSEKEKTDRAKVV 307
FK N V+ K AGG S+SSA+ A + K K + K++
Sbjct: 156 FKAENPLVKAVSVVGK--AGGEKWKSLSSAEKAPYEAK----------AAKRKAEYEKLI 299
Query: 308 LPFEHQGTGRPIQIYDGRRSLDDNSSEAAPISSGKKENSEMGEIIYFRDSDDEMPDSDED 367
+E + S DD+ S+ + S E+ GE + D DDE + DED
Sbjct: 300 KAYEKKQAS----------SADDDESDKSK-SEVNDEDDASGEEDHQEDEDDEEEEDDED 446
Query: 368 PDDD 371
D D
Sbjct: 447 DD*D 458
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 30.8 bits (68), Expect = 1.0
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +2
Query: 329 DDNSSEAAPISSG-----KKENSEMGEIIYFRDSDDEMPDSDEDPDDDLD 373
DDN E G +++ E G++ + DD+ DSD+D DDD D
Sbjct: 377 DDNDDEEDDAPDGGDDDDDEDDEEEGDVQRGGEPDDDDNDSDDDSDDDED 526
>TC224625 similar to UP|O04692 (O04692) DNA-binding protein, partial (38%)
Length = 682
Score = 30.8 bits (68), Expect = 1.0
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 319 IQIYDGRR--SLDDNSSEAAPISSGKKENSEMGEIIYFRDSDDEMPDSDEDPDDD 371
IQ Y+ ++ S DD+ S+ + S E+ GE + D DDE + DED D D
Sbjct: 277 IQAYEKKQASSADDDESDKSK-SEVNDEDDASGEEDHQEDEDDEEEEDDEDDD*D 438
>TC203361 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%)
Length = 1090
Score = 30.8 bits (68), Expect = 1.0
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 324 GRRSLDDNSSEAAPI--SSGKKENSEMGEIIYFRDSDDEMPDSDEDPDDDLD 373
G S + ++S+ AP + G +EN E E D D + D DED DDD D
Sbjct: 493 GNNSNNKSNSKKAPEGGAGGAEENGEEDE-----DEDGDDQDDDEDDDDDDD 353
>TC235094 similar to UP|PRT3_SCYCA (P30258) Protamine Z3 (Scylliorhinine Z3),
partial (76%)
Length = 466
Score = 30.4 bits (67), Expect = 1.4
Identities = 16/46 (34%), Positives = 23/46 (49%)
Frame = -2
Query: 325 RRSLDDNSSEAAPISSGKKENSEMGEIIYFRDSDDEMPDSDEDPDD 370
R L +NS E P S N+E + I + +DE + D+D DD
Sbjct: 420 RIRLMENSDEQLPFSPPNPNNAEEDDEIDEPEDEDEEEEEDDDDDD 283
>TC227390 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (24%)
Length = 808
Score = 30.0 bits (66), Expect = 1.8
Identities = 18/47 (38%), Positives = 24/47 (50%), Gaps = 5/47 (10%)
Frame = +1
Query: 332 SSEAAPISSGKKENSE-----MGEIIYFRDSDDEMPDSDEDPDDDLD 373
S++ I KK+N E E F SD+EM D+D D DD+ D
Sbjct: 133 SAKQVKIVEPKKDNEEDSDDDSDEDDDFGSSDEEMEDADSDSDDESD 273
>TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 1056
Score = 29.3 bits (64), Expect = 3.0
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -3
Query: 324 GRRSLDDNSSEAAPI--SSGKKENSEMGEIIYFRDSDDEMPDSDEDPDDD 371
G S + ++S+ AP + G +EN E E D DD+ D D+D ++D
Sbjct: 526 GNNSNNKSNSKKAPEGGAGGAEENGEEDEDEDGDDQDDDDEDDDDDDEED 377
>TC210776 similar to UP|Q8H6B1 (Q8H6B1) Global transcription factor group C
102, partial (12%)
Length = 411
Score = 29.3 bits (64), Expect = 3.0
Identities = 12/39 (30%), Positives = 22/39 (55%)
Frame = +1
Query: 333 SEAAPISSGKKENSEMGEIIYFRDSDDEMPDSDEDPDDD 371
S+ P S + E S+ ++ D DD+ DS+ED +++
Sbjct: 139 SDVEPESDSEDEASDSESLVESEDDDDDDEDSEEDSEEE 255
>TC209130 similar to PIR|T48518|T48518 transcription factor like protein -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(45%)
Length = 1220
Score = 28.9 bits (63), Expect = 3.9
Identities = 19/42 (45%), Positives = 21/42 (49%)
Frame = -2
Query: 332 SSEAAPISSGKKENSEMGEIIYFRDSDDEMPDSDEDPDDDLD 373
SS +P SSG S E D DD+ DSD D DDD D
Sbjct: 751 SSTISPSSSGVDGPSPEEEETANEDQDDDC-DSDRDADDDED 629
>TC224054 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23), partial
(3%)
Length = 493
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/28 (42%), Positives = 17/28 (59%)
Frame = -2
Query: 346 SEMGEIIYFRDSDDEMPDSDEDPDDDLD 373
S+ + +F D +DE + DED DDD D
Sbjct: 348 SKSARLPFFDDKEDEGDEDDEDDDDDDD 265
>TC218584
Length = 637
Score = 28.9 bits (63), Expect = 3.9
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +1
Query: 36 VFSHLLLQLSSHLIASKSHSQFRSGIVIVALSRTPSSYAALFKTKGIHISSSNNNWIHIL 95
++ +L L + S L+ SK F I I L + LFK+ I +S NNW L
Sbjct: 445 IYMYLFLYIWSSLVKSKIRFAFLYFIYIF-LFACSNCLVVLFKSHNIIVSYICNNWYIFL 621
Query: 96 DCYT 99
+T
Sbjct: 622 SSFT 633
>TC206168 similar to UP|Q93VP4 (Q93VP4) At1g07470/F22G5_13 (TFIIA-L2)
(Transcription factor IIA large subunit), partial (19%)
Length = 797
Score = 28.5 bits (62), Expect = 5.1
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 327 SLDDNSSEAAPISSGKKENSEMGEIIYFRDSDDEMPDSDEDPDDDLD 373
S D +S AP++ + + D DDE P ++ D DDDLD
Sbjct: 145 SSDVPASTPAPVAQNEVDEE---------DDDDEEPLNENDDDDDLD 258
>TC229591 UP|O82585 (O82585) NADP-dependent isocitrate dehydrogenase, partial
(97%)
Length = 1668
Score = 28.5 bits (62), Expect = 5.1
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +3
Query: 70 PSSYAALFKTKGIHISSSNNNWIHILDCYTDPLGWKE 106
P+ L G + NW+ +LDC+T WK+
Sbjct: 942 PAQTVLLQFLPGREVLHIGQNWMEMLDCWTSQRNWKQ 1052
>TC215452 similar to UP|P93488 (P93488) NAP1Ps, partial (29%)
Length = 609
Score = 28.5 bits (62), Expect = 5.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 341 GKKENSEMGEIIYFRDSDDEMPDSDEDPDDD 371
G E+ E E I D +DE D D+D DDD
Sbjct: 129 GDLEDDEDDEDIEEDDDEDEEDDDDDDDDDD 221
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.131 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,605,237
Number of Sequences: 63676
Number of extensions: 193279
Number of successful extensions: 1039
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of query: 374
length of database: 12,639,632
effective HSP length: 99
effective length of query: 275
effective length of database: 6,335,708
effective search space: 1742319700
effective search space used: 1742319700
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0346.3