TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0344.6
         (242 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC209467 similar to UP|XT32_ARATH (Q9SJL9) Probable xyloglucan e...    35  0.040
TC218204 similar to UP|Q9FJ27 (Q9FJ27) Polygalacturonase-like pr...    28  4.9
AW350623                                                               27  6.4
TC219794 similar to UP|Q9FED2 (Q9FED2) AtHVA22e (Abscisic acid-i...    27  6.4

>TC209467 similar to UP|XT32_ARATH (Q9SJL9) Probable xyloglucan
            endotransglucosylase/hydrolase protein 32 precursor
            (At-XTH32) (XTH-32) , partial (93%)
          Length = 1223

 Score = 34.7 bits (78), Expect = 0.040
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
 Frame = -2

Query: 3    NLTLNQHANNSEEND------SNLEQKLQNWSIPKIRTNQVYKTSIFEFNPDYEIKTVEK 56
            N    +  N S+EN        N    + NW  PK    Q+  TSI +FNP+ ++   + 
Sbjct: 1108 NFLKEKRQNKSQENSVLVLGTKNQHHNIPNW--PKCSNFQMLNTSILQFNPNTQVLGCDL 935

Query: 57   SFAVQGPYQSISI 69
            S+ +   Y+   I
Sbjct: 934  SWGLDNSYKPCGI 896


>TC218204 similar to UP|Q9FJ27 (Q9FJ27) Polygalacturonase-like protein,
           partial (51%)
          Length = 1014

 Score = 27.7 bits (60), Expect = 4.9
 Identities = 11/21 (52%), Positives = 16/21 (75%)
 Frame = +3

Query: 83  GYLHIGLVQVAVKPLTRLRYC 103
           G+LH+ ++Q+AVKPL   R C
Sbjct: 324 GHLHLPVLQLAVKPLEGWRMC 386


>AW350623 
          Length = 713

 Score = 27.3 bits (59), Expect = 6.4
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
 Frame = +1

Query: 135 PAYFNCFSSYPVCLRDPHVTT---CVDLDIKI 163
           P+Y+ C   YP C   P V +   C DL   I
Sbjct: 436 PSYYPCCGFYPFCFHQPLVKSAVRCYDLSFSI 531


>TC219794 similar to UP|Q9FED2 (Q9FED2) AtHVA22e (Abscisic acid-induced-like
           protein), partial (90%)
          Length = 709

 Score = 27.3 bits (59), Expect = 6.4
 Identities = 25/89 (28%), Positives = 41/89 (45%), Gaps = 8/89 (8%)
 Frame = +1

Query: 15  ENDSNL--EQKLQNWSIPKIRT-NQVYKTSIFEFNPD-YEIKTVEKSFAVQGPYQSISIL 70
           E+ S L  EQ L  W I    T  ++    I E+ P  Y++K +  ++ V   +   + L
Sbjct: 277 ESQSKLDDEQWLAYWIIYSFLTLTEMVLQPILEWIPIWYDVKLLTVAWLVLPQFAGAAYL 456

Query: 71  DSRIANQHVRKY----GYLHIGLVQVAVK 95
             R   +H+RKY     YL++   Q + K
Sbjct: 457 YERFVREHIRKYITEKEYLYVNHQQQSKK 543


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.320    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,567,257
Number of Sequences: 63676
Number of extensions: 160836
Number of successful extensions: 682
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of query: 242
length of database: 12,639,632
effective HSP length: 95
effective length of query: 147
effective length of database: 6,590,412
effective search space: 968790564
effective search space used: 968790564
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)