TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0344.4
         (242 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC209467 similar to UP|XT32_ARATH (Q9SJL9) Probable xyloglucan e...    34  0.052
TC219794 similar to UP|Q9FED2 (Q9FED2) AtHVA22e (Abscisic acid-i...    28  4.9
TC223952                                                               27  6.4
CO979048                                                               27  6.4
BE803724 similar to GP|8954295|gb|A photosystem I reaction cente...    27  8.3
BF069860                                                               27  8.3

>TC209467 similar to UP|XT32_ARATH (Q9SJL9) Probable xyloglucan
            endotransglucosylase/hydrolase protein 32 precursor
            (At-XTH32) (XTH-32) , partial (93%)
          Length = 1223

 Score = 34.3 bits (77), Expect = 0.052
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
 Frame = -2

Query: 3    NLTLNQHANNSEEND------SNLEQKLQNWSIPKIRTNQVYKTSIFEFNPDYEIKTVEK 56
            N    +  N S+EN        N    + NW  PK    Q+  TSI +FNP+ ++   + 
Sbjct: 1108 NFLKEKRQNKSQENSVLVLGTKNQHHNIPNW--PKCSNFQMLNTSILQFNPNTQVLGCDL 935

Query: 57   SFAVQGPYQRISI 69
            S+ +   Y+   I
Sbjct: 934  SWGLDNSYKPCGI 896


>TC219794 similar to UP|Q9FED2 (Q9FED2) AtHVA22e (Abscisic acid-induced-like
           protein), partial (90%)
          Length = 709

 Score = 27.7 bits (60), Expect = 4.9
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +1

Query: 15  ENDSNL--EQKLQNWSIPKIRT-NQVYKTSIFEFNPD-YEIKTVEKSFAVQGPYQRISIL 70
           E+ S L  EQ L  W I    T  ++    I E+ P  Y++K +  ++ V   +   + L
Sbjct: 277 ESQSKLDDEQWLAYWIIYSFLTLTEMVLQPILEWIPIWYDVKLLTVAWLVLPQFAGAAYL 456

Query: 71  DSRIVNQHVRKY 82
             R V +H+RKY
Sbjct: 457 YERFVREHIRKY 492


>TC223952 
          Length = 835

 Score = 27.3 bits (59), Expect = 6.4
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 140 CFPSYPVCLRDPHVTTCVDLDIKIPNEMFIDGIPPVSIMYRFCYK 184
           C P  P  +RD    T  D+ ++I  E  ID +  +S    FC K
Sbjct: 592 CCPLSPSQIRDEFSVTVADVQVRI--EGLIDSVDNISGFVLFCVK 720


>CO979048 
          Length = 485

 Score = 27.3 bits (59), Expect = 6.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 119 FHESVLAVLECNIQNGPAYFNCFPSYPVCLRDPH 152
           FH +  A++ CNI + P Y  C  S    L DPH
Sbjct: 268 FHSNQRALIRCNIAHRP*YRQCILS--AVL*DPH 363


>BE803724 similar to GP|8954295|gb|A photosystem I reaction center subunit
           III {Vigna radiata}, partial (40%)
          Length = 460

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 11/29 (37%), Positives = 15/29 (50%)
 Frame = +2

Query: 102 YCDLPILICLRDKRMLRFHESVLAVLECN 130
           +CD   L CLRD R L     ++ +  CN
Sbjct: 95  FCDALALCCLRDLRRLPGGADIIGLTSCN 181


>BF069860 
          Length = 418

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 182 CYKVTDNLSGIKAVRDYTVNETEVTEINAENSSRITRKI 220
           C+K    L  + AV  + ++E  VTE+  ++S +I   I
Sbjct: 240 CHKCGKKLKNLDAVEAHHISEHSVTELEEDSSRQIIETI 356


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.321    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,848,970
Number of Sequences: 63676
Number of extensions: 175013
Number of successful extensions: 673
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of query: 242
length of database: 12,639,632
effective HSP length: 95
effective length of query: 147
effective length of database: 6,590,412
effective search space: 968790564
effective search space used: 968790564
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)